ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags16b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance ... 30 5.3
2CMLE_NEUCR (P38677) Carboxy-cis,cis-muconate cyclase (EC 5.5.1.5... 30 7.0

>RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance to Pseudomonas|
           syringae protein 2)
          Length = 909

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
 Frame = +3

Query: 378 ESCIKHFVGYGPVSSSLKLNTFLKGFLLI----LQSMLKFEAVK*EVKQYFLIKGFTL 539
           E  ++++VG G ++SS  +NT  KG+ LI       +L+    K +VK + +++ F L
Sbjct: 423 EQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFAL 480



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>CMLE_NEUCR (P38677) Carboxy-cis,cis-muconate cyclase (EC 5.5.1.5)|
           (3-carboxy-cis,cis-muconate lactonizing enzyme) (CMLE)
          Length = 365

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
 Frame = -3

Query: 682 TSTIFVDIAGLP--VSYENYYNSFEARGG--TVDEVMNSFIQLPKFESNMNSNVKPFI-- 521
           T  IF+  A  P    Y N +  F   G   +V E       +  +E   N+ +   +  
Sbjct: 94  TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD 153

Query: 520 --KKYCFTSYFTASNFNMLCKISKKPFKNVFSFKLEDTGPYPTKCLMHDSGHYLPVYME 350
             + Y +++  TA+      K++    + V S    D G +P    MH +G+YL   ME
Sbjct: 154 PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,828,867
Number of Sequences: 219361
Number of extensions: 1681375
Number of successful extensions: 4053
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4052
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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