ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COBF_PSEDE (P21636) Precorrin-6A synthase [deacetylating] (EC 2.... 30 1.5

>COBF_PSEDE (P21636) Precorrin-6A synthase [deacetylating] (EC 2.1.1.152)|
          Length = 261

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 298 LCXMYIDKDDPSKITFXTPTGLRRTFPVSAFGKVDDGKAKV 176
           +C  Y+ + D   + F  P  +RRT  VS  G VDD  A++
Sbjct: 55  ICARYVTRKDSRTVEFAVP--VRRTEGVSYDGSVDDWHAQI 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,865,822
Number of Sequences: 219361
Number of extensions: 429067
Number of successful extensions: 826
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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