ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC140433.3| Mus musculus BAC clone RP23-96L16 from chromosome... 38 2.3
2gb|AC121818.3| Mus musculus BAC clone RP23-459J16 from chromosom... 38 2.3
3emb|AL451006.6| Human DNA sequence from clone RP11-216M14 on chr... 38 2.3
4emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on ch... 38 2.3
5gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, com... 38 2.3
6gb|AC021945.14| Homo sapiens chromosome 8, clone RP11-85I17, com... 38 2.3
7emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 i... 38 2.3
8gb|CP000224.1| Drosophila melanogaster genomic scaffold 21100002... 38 2.3
9gb|AC121873.3| Mus musculus BAC clone RP24-123L3 from chromosome... 36 9.1
10gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Canc... 36 9.1
11gb|AC091205.3| Drosophila melanogaster 3L BAC RP98-22N9 (Roswell... 36 9.1
12gb|AC010109.6| Drosophila melanogaster 3L BAC RP98-9B4 (Roswell ... 36 9.1
13gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12... 36 9.1
14gb|AC004356.1|AC004356 Drosophila melanogaster DNA sequence (P1 ... 36 9.1

>gb|AC140433.3| Mus musculus BAC clone RP23-96L16 from chromosome 16, complete sequence
          Length = 231593

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     gacacatagcacacatatc 45
              |||||||||||||||||||
Sbjct: 185843 gacacatagcacacatatc 185861



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>gb|AC121818.3| Mus musculus BAC clone RP23-459J16 from chromosome 16, complete
             sequence
          Length = 199539

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    gacacatagcacacatatc 45
             |||||||||||||||||||
Sbjct: 92276 gacacatagcacacatatc 92294



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>emb|AL451006.6| Human DNA sequence from clone RP11-216M14 on chromosome 1, complete
             sequence
          Length = 93119

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tagacacatagcacacata 43
             |||||||||||||||||||
Sbjct: 71214 tagacacatagcacacata 71232



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>emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on chromosome 13 Contains part
              of a novel gene (including KIAA0865), possible ortholog of
              rat myosin heavy chain Myr 8 (Loc192253) and a novel gene,
              complete sequence
          Length = 170276

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      gatcacatatattctgaat 19
              |||||||||||||||||||
Sbjct: 141409 gatcacatatattctgaat 141391



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>gb|AC107960.3| Homo sapiens chromosome 8, clone RP11-983C19, complete sequence
          Length = 180854

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      gatcacatatattctgaat 19
              |||||||||||||||||||
Sbjct: 172134 gatcacatatattctgaat 172152



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>gb|AC021945.14| Homo sapiens chromosome 8, clone RP11-85I17, complete sequence
          Length = 108780

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     gatcacatatattctgaat 19
             |||||||||||||||||||
Sbjct: 19385 gatcacatatattctgaat 19403



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>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22,
              complete sequence
          Length = 237985

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      atcacatatattctgaatg 20
              |||||||||||||||||||
Sbjct: 197219 atcacatatattctgaatg 197237



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>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794
          Length = 474727

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     acacatagcacacatatcc 46
              |||||||||||||||||||
Sbjct: 183235 acacatagcacacatatcc 183217



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>gb|AC121873.3| Mus musculus BAC clone RP24-123L3 from chromosome 19, complete sequence
          Length = 209035

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 24     ctagacacatagcacaca 41
              ||||||||||||||||||
Sbjct: 113622 ctagacacatagcacaca 113639



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>gb|AC129416.1| Homo sapiens 12 BAC RP11-464G3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 139995

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      tatattctgaatgggtct 25
              ||||||||||||||||||
Sbjct: 125997 tatattctgaatgggtct 125980



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>gb|AC091205.3| Drosophila melanogaster 3L BAC RP98-22N9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170836

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 25    tagacacatagcacacatatcc 46
             |||||||| |||||||||||||
Sbjct: 99709 tagacacacagcacacatatcc 99688



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>gb|AC010109.6| Drosophila melanogaster 3L BAC RP98-9B4 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167675

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 25     tagacacatagcacacatatcc 46
              |||||||| |||||||||||||
Sbjct: 146217 tagacacacagcacacatatcc 146196



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>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete
              sequence
          Length = 317354

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 25     tagacacatagcacacatatcc 46
              |||||||| |||||||||||||
Sbjct: 111954 tagacacacagcacacatatcc 111975



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>gb|AC004356.1|AC004356 Drosophila melanogaster DNA sequence (P1 DS01105 (D259)), complete
             sequence
          Length = 71343

 Score = 36.2 bits (18), Expect = 9.1
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 25    tagacacatagcacacatatcc 46
             |||||||| |||||||||||||
Sbjct: 55651 tagacacacagcacacatatcc 55672


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 329,255
Number of Sequences: 3902068
Number of extensions: 329255
Number of successful extensions: 21741
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21723
Number of HSP's gapped (non-prelim): 18
length of query: 62
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 41
effective length of database: 17,151,101,840
effective search space: 703195175440
effective search space used: 703195175440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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