ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15m15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFB_SYMTH (Q67QF2) Phenylalanyl-tRNA synthetase beta chain (EC ... 29 3.7

>SYFB_SYMTH (Q67QF2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 892

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -2

Query: 237 GVLVDGAVDGA*LPXGEVQGDXHLKTFSSWACLCCE 130
           G LV  AV GA LP G   G   L+   S   LC E
Sbjct: 87  GALVPAAVPGAKLPGGVTMGVKKLRGLDSHGMLCSE 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,916,022
Number of Sequences: 219361
Number of extensions: 491803
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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