ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CR701978.2|CNS0G4LI Tetraodon nigroviridis full-length cDNA 44 0.20
2emb|CR697007.2|CNS0G0RF Tetraodon nigroviridis full-length cDNA 44 0.20
3emb|CR695690.2|CNS0FZQU Tetraodon nigroviridis full-length cDNA 44 0.20
4emb|CR689683.2|CNS0FV3Z Tetraodon nigroviridis full-length cDNA 44 0.20
5emb|CR688012.2|CNS0FTTK Tetraodon nigroviridis full-length cDNA 44 0.20
6emb|CR678087.2|CNS0FM64 Tetraodon nigroviridis full-length cDNA 44 0.20
7emb|CR647786.2|CNS0EYSW Tetraodon nigroviridis full-length cDNA 44 0.20
8emb|CR646046.2|CNS0EXGK Tetraodon nigroviridis full-length cDNA 44 0.20
9emb|CR632873.2|CNS0ENAN Tetraodon nigroviridis full-length cDNA 44 0.20
10emb|CR633282.2|CNS0ENM0 Tetraodon nigroviridis full-length cDNA 44 0.20
11emb|CR631229.2|CNS0EM0Y Tetraodon nigroviridis full-length cDNA 44 0.20
12emb|CR632234.2|CNS0EMSW Tetraodon nigroviridis full-length cDNA 44 0.20
13emb|CR631991.2|CNS0EMM5 Tetraodon nigroviridis full-length cDNA 44 0.20
14emb|CR631457.2|CNS0EM7A Tetraodon nigroviridis full-length cDNA 44 0.20
15gb|AF092915.1|AF092915 Nicotiana tabacum cytochrome P450-depende... 44 0.20
16gb|AC161045.2| Mus musculus BAC clone RP24-326E14 from chromosom... 42 0.81
17gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 42 0.81
18gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complet... 42 0.81
19gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, com... 42 0.81
20emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4... 42 0.81
21emb|AL359260.20| Human DNA sequence from clone RP11-73H14 on chr... 42 0.81
22gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosom... 42 0.81
23dbj|AK086271.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 42 0.81
24gb|AC121139.20| Mus musculus chromosome 5, clone RP23-429G1, com... 42 0.81
25gb|AC136738.23| Mus musculus chromosome 6, clone RP23-173F22, co... 42 0.81
26gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, comp... 42 0.81
27emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on ch... 42 0.81
28ref|XM_512875.1| PREDICTED: Pan troglodytes similar to KIAA2033 ... 40 3.2
29gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosom... 40 3.2
30ref|NM_191650.1| Oryza sativa (japonica cultivar-group), predic... 40 3.2
31gb|AC122820.4| Mus musculus BAC clone RP23-200M5 from chromosome... 40 3.2
32emb|BX813336.4| Mouse DNA sequence from clone RP23-207B5 on chro... 40 3.2
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
34gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome ... 40 3.2
35dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
36dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
37gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.2
38emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chr... 40 3.2
39dbj|AB044144.1| Halocynthia roretzi mRNA for synaptotagmin, comp... 40 3.2 
>emb|CR701978.2|CNS0G4LI Tetraodon nigroviridis full-length cDNA
          Length = 574

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 272 catcctgggactttcctttcct 251
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>emb|CR697007.2|CNS0G0RF Tetraodon nigroviridis full-length cDNA
          Length = 539

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 238 catcctgggactttcctttcct 217
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>emb|CR695690.2|CNS0FZQU Tetraodon nigroviridis full-length cDNA
          Length = 813

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 267 catcctgggactttcctttcct 246
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>emb|CR689683.2|CNS0FV3Z Tetraodon nigroviridis full-length cDNA
          Length = 602

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 301 catcctgggactttcctttcct 280
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>emb|CR688012.2|CNS0FTTK Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>emb|CR678087.2|CNS0FM64 Tetraodon nigroviridis full-length cDNA
          Length = 603

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 301 catcctgggactttcctttcct 280
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>emb|CR647786.2|CNS0EYSW Tetraodon nigroviridis full-length cDNA
          Length = 577

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 272 catcctgggactttcctttcct 251
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>emb|CR646046.2|CNS0EXGK Tetraodon nigroviridis full-length cDNA
          Length = 568

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 268 catcctgggactttcctttcct 247
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>emb|CR632873.2|CNS0ENAN Tetraodon nigroviridis full-length cDNA
          Length = 602

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 302 catcctgggactttcctttcct 281
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>emb|CR633282.2|CNS0ENM0 Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>emb|CR631229.2|CNS0EM0Y Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>emb|CR632234.2|CNS0EMSW Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>emb|CR631991.2|CNS0EMM5 Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>emb|CR631457.2|CNS0EM7A Tetraodon nigroviridis full-length cDNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   catcctgggactttcctttcct 30
           ||||||||||||||||||||||
Sbjct: 265 catcctgggactttcctttcct 244
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>gb|AF092915.1|AF092915 Nicotiana tabacum cytochrome P450-dependent fatty acid hydroxylase
           (CYP94A4) mRNA, complete cds
          Length = 1722

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 21  ttcctttcctcttcctcttgtt 42
           ||||||||||||||||||||||
Sbjct: 83  ttcctttcctcttcctcttgtt 104
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>gb|AC161045.2| Mus musculus BAC clone RP24-326E14 from chromosome 13, complete
             sequence
          Length = 150469

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttcctttcctcttcctctt 39
             |||||||||||||||||||||
Sbjct: 61779 ctttcctttcctcttcctctt 61799
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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     ctttcctttcctcttcctctt 39
              |||||||||||||||||||||
Sbjct: 203358 ctttcctttcctcttcctctt 203338
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>gb|AC121878.1| Mus musculus BAC clone RP24-131C8 from 5, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    ctttcctttcctcttcctctt 39
             |||||||||||||||||||||
Sbjct: 59829 ctttcctttcctcttcctctt 59809
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>gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, complete sequence
          Length = 164548

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttcctttcctcttcctctt 39
             |||||||||||||||||||||
Sbjct: 45563 ctttcctttcctcttcctctt 45583
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>emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4, COMPLETE SEQUENCE
          Length = 119142

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttcctttcctcttcctctt 39
              |||||||||||||||||||||
Sbjct: 101681 ctttcctttcctcttcctctt 101701
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>emb|AL359260.20| Human DNA sequence from clone RP11-73H14 on chromosome 10 Contains the
              CSPG6 gene for chondroitin sulfate proteoglycan 6
              (bamacan)(BAM, HCAP, SMC3, SMC3L1), a ribosomal protein L7
              (RPL7) pseudogene, the 5' end of a novel gene and three CpG
              islands, complete sequence
          Length = 152747

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttcctttcctcttcctctt 39
              |||||||||||||||||||||
Sbjct: 136376 ctttcctttcctcttcctctt 136396
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>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence
          Length = 213870

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    tttcctttcctcttcctcttg 40
             |||||||||||||||||||||
Sbjct: 45274 tttcctttcctcttcctcttg 45294
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>dbj|AK086271.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930017K02 product:unclassifiable, full
           insert sequence
          Length = 2771

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 19  ctttcctttcctcttcctctt 39
           |||||||||||||||||||||
Sbjct: 224 ctttcctttcctcttcctctt 244
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>gb|AC121139.20| Mus musculus chromosome 5, clone RP23-429G1, complete sequence
          Length = 206249

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttcctttcctcttcctctt 39
             |||||||||||||||||||||
Sbjct: 98557 ctttcctttcctcttcctctt 98577
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>gb|AC136738.23| Mus musculus chromosome 6, clone RP23-173F22, complete sequence
          Length = 195153

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttcctttcctcttcctctt 39
              |||||||||||||||||||||
Sbjct: 153942 ctttcctttcctcttcctctt 153962
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>gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, complete sequence
          Length = 216783

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     ctttcctttcctcttcctctt 39
              |||||||||||||||||||||
Sbjct: 152866 ctttcctttcctcttcctctt 152886
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>emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on chromosome 13, complete
             sequence
          Length = 199574

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ctttcctttcctcttcctctt 39
             |||||||||||||||||||||
Sbjct: 62448 ctttcctttcctcttcctctt 62468
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>ref|XM_512875.1| PREDICTED: Pan troglodytes similar to KIAA2033 protein (LOC456268),
           mRNA
          Length = 2459

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 19  ctttcctttcctcttcctcttgtt 42
           |||| |||||||||||||||||||
Sbjct: 128 ctttgctttcctcttcctcttgtt 105
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>gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence
          Length = 192614

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     ctttcctttcctcttcctct 38
              ||||||||||||||||||||
Sbjct: 145184 ctttcctttcctcttcctct 145203
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>ref|NM_191650.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1728

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  tcctttcctcttcctcttgt 41
           ||||||||||||||||||||
Sbjct: 472 tcctttcctcttcctcttgt 453
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>gb|AC122820.4| Mus musculus BAC clone RP23-200M5 from chromosome 6, complete sequence
          Length = 215238

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ctttcctttcctcttcctct 38
             ||||||||||||||||||||
Sbjct: 50126 ctttcctttcctcttcctct 50107
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>emb|BX813336.4| Mouse DNA sequence from clone RP23-207B5 on chromosome 2, complete
            sequence
          Length = 142773

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   tttcctttcctcttcctctt 39
            ||||||||||||||||||||
Sbjct: 6922 tttcctttcctcttcctctt 6941
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       tcctttcctcttcctcttgt 41
                ||||||||||||||||||||
Sbjct: 29284866 tcctttcctcttcctcttgt 29284847
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>gb|AC079436.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-108L19,
             complete sequence
          Length = 174622

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ctttcctttcctcttcctct 38
             ||||||||||||||||||||
Sbjct: 55010 ctttcctttcctcttcctct 54991
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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tcctttcctcttcctcttgt 41
             ||||||||||||||||||||
Sbjct: 63729 tcctttcctcttcctcttgt 63710
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>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0684B02
          Length = 132470

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     tcctttcctcttcctcttgt 41
              ||||||||||||||||||||
Sbjct: 130653 tcctttcctcttcctcttgt 130634
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     cgccgtcgacgaggacacca 238
               ||||||||||||||||||||
Sbjct: 4726974 cgccgtcgacgaggacacca 4726993
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>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete
             sequence
          Length = 166299

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ctttcctttcctcttcctct 38
             ||||||||||||||||||||
Sbjct: 67135 ctttcctttcctcttcctct 67154
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>dbj|AB044144.1| Halocynthia roretzi mRNA for synaptotagmin, complete cds
          Length = 2544

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  tttcctttcctcttcctctt 39
           ||||||||||||||||||||
Sbjct: 502 tttcctttcctcttcctctt 483


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,263,866
Number of Sequences: 3902068
Number of extensions: 2263866
Number of successful extensions: 69473
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69327
Number of HSP's gapped (non-prelim): 146
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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