>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                         
Query: 128     ccctaaaacttatagaagcaatctcttcaagttaacttaatg 169
               ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7743638 ccctaaaacttgtagaagcaatctcttcaagttaacttaatg 7743679

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                         
Query: 128     ccctaaaacttatagaagcaatctcttcaagttaacttaatg 169
               ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 7741473 ccctaaaacttgtagaagcaatctcttcaagttaacttaatg 7741514

>dbj|AK100847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123H08, full
           insert sequence
          Length = 1094

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                     
Query: 128 ccctaaaacttatagaagcaatctcttcaagttaacttaatg 169
           ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 919 ccctaaaacttgtagaagcaatctcttcaagttaacttaatg 878



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                       
Query: 271 tttgctatctaggactcattgctttctcttctcctgccgttttggccagcaaactggctt 330
           ||||||||||||||||||| ||   |||||| || ||||||||||||||  || ||||| 
Sbjct: 778 tttgctatctaggactcatagcagcctcttcaccagccgttttggccagtgaattggctc 719

                        
Query: 331 tctgatcatcaaa 343
           ||| |||||||||
Sbjct: 718 tctcatcatcaaa 706

>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                        
Query: 128    ccctaaaacttatagaagcaatctcttcaagttaacttaatg 169
              ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 109156 ccctaaaacttgtagaagcaatctcttcaagttaacttaatg 109115

>gb|AY105486.1| Zea mays PCO104538 mRNA sequence
          Length = 1046

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 271 tttgctatctaggactcattgctttctcttctcctgccgttttggccagcaaactggctt 330
           ||||||||||||||||||||||   ||| ||  | |||||||||||||| ||||||||||
Sbjct: 723 tttgctatctaggactcattgcagcctcctcgtcagccgttttggccagtaaactggctt 664

             
Query: 331 tc 332
           ||
Sbjct: 663 tc 662

>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 19      ggaacaaaaccgtgttcgtcc 39
               |||||||||||||||||||||
Sbjct: 1663138 ggaacaaaaccgtgttcgtcc 1663158

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 266     ctcggtttgctatctaggact 286
               |||||||||||||||||||||
Sbjct: 4467859 ctcggtttgctatctaggact 4467839

>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005A05
          Length = 162520

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 266   ctcggtttgctatctaggact 286
             |||||||||||||||||||||
Sbjct: 62589 ctcggtttgctatctaggact 62569

>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0470C02
          Length = 158849

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    ctcggtttgctatctaggact 286
              |||||||||||||||||||||
Sbjct: 115540 ctcggtttgctatctaggact 115520

>dbj|AP006659.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L15, TM0344,
             complete sequence
          Length = 87645

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gaagcaatctcttcaagttaa 162
             |||||||||||||||||||||
Sbjct: 37561 gaagcaatctcttcaagttaa 37541



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gaagcaatctcttcaagttaa 162
             |||||||||||||||||||||
Sbjct: 37207 gaagcaatctcttcaagttaa 37187



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gaagcaatctcttcaagttaa 162
             |||||||||||||||||||||
Sbjct: 36823 gaagcaatctcttcaagttaa 36803



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gaagcaatctcttcaagttaa 162
             |||||||||||||||||||||
Sbjct: 36439 gaagcaatctcttcaagttaa 36419



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gaagcaatctcttcaagttaa 162
             |||||||||||||||||||||
Sbjct: 35960 gaagcaatctcttcaagttaa 35940

>emb|AL671877.15| Mouse DNA sequence from clone RP23-214E3 on chromosome 3, complete
              sequence
          Length = 146015

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 140    tagaagcaatctcttcaagtt 160
              |||||||||||||||||||||
Sbjct: 136132 tagaagcaatctcttcaagtt 136152

>gb|AC154107.3| Mus musculus BAC clone RP23-67L1 from chromosome 8, complete sequence
          Length = 246658

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    gaacacataacctcagggaa 245
              ||||||||||||||||||||
Sbjct: 238489 gaacacataacctcagggaa 238470

>ref|XM_873107.1| PREDICTED: Bos taurus similar to Cyclin G-associated kinase,
            transcript variant 3 (LOC511296), mRNA
          Length = 1705

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tgctttctcttctcctgccg 309
            ||||||||||||||||||||
Sbjct: 1484 tgctttctcttctcctgccg 1465

>ref|XM_588603.2| PREDICTED: Bos taurus similar to Cyclin G-associated kinase,
            transcript variant 2 (LOC511296), mRNA
          Length = 2248

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tgctttctcttctcctgccg 309
            ||||||||||||||||||||
Sbjct: 2027 tgctttctcttctcctgccg 2008

>gb|BC105343.1| Bos taurus cyclin G associated kinase, mRNA (cDNA clone MGC:127293
            IMAGE:7948874), complete cds
          Length = 4394

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  tgctttctcttctcctgccg 309
            ||||||||||||||||||||
Sbjct: 4097 tgctttctcttctcctgccg 4078

>emb|CR751227.13| Zebrafish DNA sequence from clone DKEY-178D9 in linkage group 3,
             complete sequence
          Length = 114387

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   tgctttctcttctcctgccgtttt 313
             ||||||||||||||||||| ||||
Sbjct: 62062 tgctttctcttctcctgccttttt 62085

>gb|AC101229.8| Mus musculus chromosome 8, clone RP23-96L20, complete sequence
          Length = 213812

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    gaacacataacctcagggaa 245
              ||||||||||||||||||||
Sbjct: 118551 gaacacataacctcagggaa 118532

>ref|XM_961477.1| PREDICTED: Tribolium castaneum similar to CG16989-PA (LOC655008),
            mRNA
          Length = 2991

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  aaaccggctgctcggtttgc 275
            ||||||||||||||||||||
Sbjct: 1900 aaaccggctgctcggtttgc 1881

>emb|AL645782.2| Zebrafish DNA sequence from clone BUSM1-254O17 in linkage group 3
             Contains the hoxb1a, hoxb2a, hoxb3a, hoxb4a, hoxb5a,
             hoxb6a, hoxb7a and hob8a genes and three CpG islands,
             complete sequence
          Length = 119385

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   tgctttctcttctcctgccgtttt 313
             ||||||||||||||||||| ||||
Sbjct: 93706 tgctttctcttctcctgccttttt 93683

>gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187303

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   ctaaaacttatagaagcaat 149
             ||||||||||||||||||||
Sbjct: 68818 ctaaaacttatagaagcaat 68837

>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181345

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   ttgctttctcttctcctgcc 308
             ||||||||||||||||||||
Sbjct: 87471 ttgctttctcttctcctgcc 87452

>gb|AC104437.2| Homo sapiens chromosome 3 clone RP11-734E15, complete sequence
          Length = 177100

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   ctggctttctgatcatcaaa 343
             ||||||||||||||||||||
Sbjct: 86712 ctggctttctgatcatcaaa 86693

>gb|AC151991.2| Mus musculus BAC clone RP23-216P20 from 8, complete sequence
          Length = 174533

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   gaacacataacctcagggaa 245
             ||||||||||||||||||||
Sbjct: 55864 gaacacataacctcagggaa 55883

>gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosome 10, complete
             sequence
          Length = 212773

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aaatacatcgtgatgttttt 61
             ||||||||||||||||||||
Sbjct: 71854 aaatacatcgtgatgttttt 71873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,828,606
Number of Sequences: 3902068
Number of extensions: 2828606
Number of successful extensions: 53974
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53830
Number of HSP's gapped (non-prelim): 143
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)