Clone Information

BLAST Search Result

Clone Name	rbags15m13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	S23IP_MOUSE (Q6NZC7) SEC23-interacting protein	57	8e-08
2	SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing prote...	51	5e-06
3	SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein...	49	1e-05
4	SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing prote...	49	1e-05
5	S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)	48	3e-05
6	USH1G_HUMAN (Q495M9) Usher syndrome type-1G protein (Scaffold pr...	47	7e-05
7	ANS4B_MOUSE (Q8K3X6) Ankyrin repeat and SAM domain-containing pr...	46	1e-04
8	USH1G_MOUSE (Q80T11) Usher syndrome type-1G protein homolog (Sca...	46	1e-04
9	ANS4B_HUMAN (Q8N8V4) Ankyrin repeat and SAM domain-containing pr...	45	3e-04
10	ANKS3_HUMAN (Q6ZW76) Ankyrin repeat and SAM domain-containing pr...	44	6e-04
11	ANKS3_RAT (Q5M9H0) Ankyrin repeat and SAM domain-containing prot...	43	0.001
12	ANKS3_MOUSE (Q9CZK6) Ankyrin repeat and SAM domain-containing pr...	43	0.001
13	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	42	0.002
14	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	42	0.002
15	RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated p...	39	0.014
16	RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated p...	39	0.014
17	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	39	0.024
18	YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I	38	0.031
19	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	38	0.041
20	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	37	0.069
21	RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated p...	36	0.12
22	YNE1_CAEEL (P30640) Hypothetical protein R08D7.1	35	0.26
23	RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated p...	35	0.26
24	BAR2_CHITE (P02851) Balbiani ring protein 2 (Giant secretory pro...	35	0.34
25	RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated pro...	35	0.34
26	RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated p...	35	0.34
27	RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated p...	35	0.34
28	K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043	34	0.59
29	SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal tra...	33	0.77
30	SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal t...	33	0.77
31	IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s...	33	0.77
32	PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type...	33	1.00
33	MTRM_DROYA (P83733) Protein matrimony (Cell cycle arrest protein...	33	1.00
34	SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar...	33	1.00
35	YR871_MIMIV (Q5UP41) Hypothetical protein R871	33	1.00
36	EWS_MOUSE (Q61545) RNA-binding protein EWS	33	1.3
37	K0853_HUMAN (Q5T200) Protein KIAA0853	33	1.3
38	SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal t...	32	1.7
39	AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Co...	32	1.7
40	GRPE_PEWBP (Q9KJU0) Protein grpE (HSP-70 cofactor)	32	1.7
41	ASPX_VULVU (P53353) Sperm acrosomal protein FSA-ACR.1 precursor ...	32	1.7
42	EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing...	32	1.7
43	RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated p...	32	2.2
44	MTRM_DROME (Q23973) Protein matrimony (Cell cycle arrest protein...	32	2.2
45	RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated pro...	32	2.9
46	SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,...	32	2.9
47	TGT_STAAW (P66906) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
48	TGT_STAAS (Q6G8T0) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
49	TGT_STAAR (Q6GG65) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
50	TGT_STAAN (P66905) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
51	TGT_STAAM (P66904) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
52	TGT_STAAC (Q5HFC4) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	32	2.9
53	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	32	2.9
54	K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043	31	3.8
55	ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ...	31	3.8
56	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	31	3.8
57	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	31	3.8
58	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	31	3.8
59	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	31	3.8
60	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	31	3.8
61	NCOA1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48...	31	3.8
62	ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11...	31	3.8
63	JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation...	31	3.8
64	BICD1_HUMAN (Q96G01) Cytoskeleton-like bicaudal D protein homolog 1	31	5.0
65	PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9	31	5.0
66	TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	31	5.0
67	YA4C_SCHPO (Q09729) Hypothetical protein C31A2.12 in chromosome I	31	5.0
68	TGT_STAES (Q8CML7) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	31	5.0
69	TGT_STAEQ (Q5HNR2) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)...	31	5.0
70	MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription...	30	6.5
71	PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precur...	30	6.5
72	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	30	6.5
73	GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GA...	30	6.5
74	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	30	8.5
75	NLAL2_ARATH (Q9FK53) Putative H/ACA ribonucleoprotein complex su...	30	8.5

>S23IP_MOUSE (Q6NZC7) SEC23-interacting protein|
          Length = 998

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = -1

Query: 490 EDNKLMESHHLDAGPTSPVLKEIPSTVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSD 311
           E++KLM     D      V  E P T+ G L ++ L  Y+  F+ E++DM +L      D
Sbjct: 623 EESKLMSDESCDLD----VEDEEPLTLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDD 678

Query: 310 LKDMGVPMGPRKKI 269
           LK+MG+P+GPRKKI
Sbjct: 679 LKEMGIPLGPRKKI 692

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>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin|
           repeat domain-containing protein 14)
          Length = 871

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -1

Query: 412 VTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVAPY--GK 242
           +TG+L  + LEKY  +F+ +EVDM A   + D DLK++G+   G R++IL A++    GK
Sbjct: 778 LTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGSRQQILAAISELNAGK 837

Query: 241 QRHR 230
            R R
Sbjct: 838 GRER 841

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>SAMD6_RAT (P0C0T2) Sterile alpha motif domain-containing protein 6|
           (Polycystic kidney disease protein 1) (SamCystin)
          Length = 871

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -1

Query: 412 VTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVAPY--GK 242
           +TG+L  + LEKY  +F+ +EVDM A   + D DL+++G+   G R++IL A++    GK
Sbjct: 778 LTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLQELGIKTDGSRQQILAAISELNAGK 837

Query: 241 QRHR 230
            R R
Sbjct: 838 GRER 841

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>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = -1

Query: 412 VTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVAPY--GK 242
           +TG+L  + LEKY  +F+ +EVDM A   + D DL+++G+   G R++IL A++    GK
Sbjct: 776 LTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLQELGIKTDGSRQQILAAISELNAGK 835

Query: 241 QRHR 230
            R R
Sbjct: 836 GRER 839

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>S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)|
          Length = 1000

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = -1

Query: 415 TVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPMGPRKKI 269
           T+   L ++ L +Y   F+ E++DM +L      DLK+MG+P+GPRKKI
Sbjct: 648 TLQETLEALSLSEYFSTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKI 696

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>USH1G_HUMAN (Q495M9) Usher syndrome type-1G protein (Scaffold protein|
           containing ankyrin repeats and SAM domain)
          Length = 461

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 418 STVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPMGPRKKILLAV 257
           S +   L S+ +E +  L + E++D+ AL    D DL+ + VP+GPRKKIL AV
Sbjct: 390 SPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPRKKILGAV 443

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>ANS4B_MOUSE (Q8K3X6) Ankyrin repeat and SAM domain-containing protein 4B|
           (Harmonin-interacting ankyrin repeat-containing protein)
           (Harp)
          Length = 423

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 46/90 (51%)
 Frame = -1

Query: 526 NLTKTALPWGSIEDNKLMESHHLDAGPTSPVLKEIPSTVTGLLNSMGLEKYVVLFQAEEV 347
           N T   LPW   E+    E   +DA P    L+           S  LE+++ +F  E++
Sbjct: 329 NGTAGDLPWD--EEEVEWEEDAVDATPLEVFLQ-----------SQHLEEFLPIFMREQI 375

Query: 346 DMAALSQMKDSDLKDMGVPMGPRKKILLAV 257
           D+ AL    D DL+++ + +GPRKK+L A+
Sbjct: 376 DLEALLLCSDEDLQNIHMQLGPRKKVLSAI 405

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>USH1G_MOUSE (Q80T11) Usher syndrome type-1G protein homolog (Scaffold protein|
           containing ankyrin repeats and SAM domain) (Jackson
           shaker protein)
          Length = 461

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 34/54 (62%)
 Frame = -1

Query: 418 STVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPMGPRKKILLAV 257
           S +   L S+ +E +  L + E++D+ AL    D DL+ + VP+GPRKKIL AV
Sbjct: 390 SPLETFLASLHMEDFASLLRHEKIDLEALMLCSDLDLRSISVPLGPRKKILGAV 443

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>ANS4B_HUMAN (Q8N8V4) Ankyrin repeat and SAM domain-containing protein 4B|
           (Harmonin-interacting ankyrin repeat-containing protein)
           (Harp)
          Length = 460

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 29/90 (32%), Positives = 45/90 (50%)
 Frame = -1

Query: 526 NLTKTALPWGSIEDNKLMESHHLDAGPTSPVLKEIPSTVTGLLNSMGLEKYVVLFQAEEV 347
           N  K  LPW   +D    E   +DA P    L            S  LE+++ +F+ E++
Sbjct: 323 NGLKDDLPWD--DDEVEWEEDVVDATPLEVFLL-----------SQHLEEFLPIFKREQI 369

Query: 346 DMAALSQMKDSDLKDMGVPMGPRKKILLAV 257
           D+ AL    D DL+ + + +GPRKK+L A+
Sbjct: 370 DLEALLLCSDEDLQSIQMQLGPRKKVLNAI 399

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>ANKS3_HUMAN (Q6ZW76) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 656

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = -1

Query: 421 PSTVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVA 254
           P  +  LL  +G  KY+ +F+ ++VD+     + +SDLK++G+ + GP++K+  A+A
Sbjct: 427 PQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIA 483

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>ANKS3_RAT (Q5M9H0) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 663

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 19/57 (33%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = -1

Query: 421 PSTVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVA 254
           P  +  LL  +G  KY+ +F+ ++VD+     + +SDLK++G+ + GP++K+  A+A
Sbjct: 426 PQDLATLLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIA 482

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>ANKS3_MOUSE (Q9CZK6) Ankyrin repeat and SAM domain-containing protein 3|
          Length = 655

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = -1

Query: 421 PSTVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGVPM-GPRKKILLAVA 254
           P  +  LL  +G  KY+ +F+ +++D+     + +SDLK++G+ + GP++K+  A+A
Sbjct: 426 PQDLATLLEQIGCLKYLQVFEEQDIDLRIFLTLTESDLKEIGITLFGPKRKMTSAIA 482

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 42/113 (37%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
 Frame = -3

Query: 773 KGMSPPISG--RRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRG--MS 606
           K  SP IS   R+G  P RS R   SPP+N R   S PR R+     SPP  +RRG   S
Sbjct: 643 KRRSPSISSKHRKGSPPSRSNRETRSPPQNKRDSPS-PRPRASHTSSSPP-PLRRGASAS 700

Query: 605 PPRTYDHITRSSSHITRDAADTLRTHQPYEDSSTMGIDRGQQTNGITPSGRRA 447
           P R      +S S  TR      RT +P            ++T   TPS R A
Sbjct: 701 PQR-----RQSPSPSTRPIRRVSRTPEP------------KKTKASTPSPRSA 736



 Score = 37.4 bits (85), Expect = 0.053
 Identities = 28/62 (45%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSP--PRNVRXGMSPPRTRSVQ-RGMSPPRSVRRGMS 606
           R    PP   RR  SPP   RR  SP  PR  R    PPR RS   R  SPP   R   S
Sbjct: 542 RSPSPPPARRRRSPSPPPPPRRRRSPSLPRR-RSPSPPPRRRSPSPRRYSPPIQRRYSPS 600

Query: 605 PP 600
           PP
Sbjct: 601 PP 602



 Score = 35.4 bits (80), Expect = 0.20
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSP-PRNVRXGMSPPRTR-----SVQRGMSPPRSVR 618
           RKG  P  S R   SPP++ R   SP PR      SPP  R     S QR  SP  S R
Sbjct: 654 RKGSPPSRSNRETRSPPQNKRDSPSPRPRASHTSSSPPPLRRGASASPQRRQSPSPSTR 712



 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSP-PRSVRRGMSPP 600
           R+  SPP   RR  SP    RR  SPP   R       +  +QR  SP P   RR  SPP
Sbjct: 552 RRSPSPPPPPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPP 611



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 34/124 (27%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
 Frame = -3

Query: 764 SPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPR-------------- 627
           SPPI  R   SPP   R    PP   R     P+++       PP+              
Sbjct: 590 SPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPQSKRRVSHSPPPKQRSSPAAKRRSPSI 649

Query: 626 -SVRRGMSPPRTYDHITRSSSHITRDAADTLRTHQPYEDSSTMGIDRG-----QQTNGIT 465
            S  R  SPP   +  TRS     RD+    R    +  SS   + RG     Q+    +
Sbjct: 650 SSKHRKGSPPSRSNRETRSPPQNKRDSPSP-RPRASHTSSSPPPLRRGASASPQRRQSPS 708

Query: 464 PSGR 453
           PS R
Sbjct: 709 PSTR 712



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSP---PRSARRGMSPPRNVRXGMSP--PRTRSVQRGMSPPRSVRRG 612
           RK    P   RR  SP   P   RR  SPP   R   SP  PR RS      PPR  RR 
Sbjct: 529 RKRQKEPSPRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPS---PPPR--RRS 583

Query: 611 MSPPRTYDHITRSSS 567
            SP R    I R  S
Sbjct: 584 PSPRRYSPPIQRRYS 598



 Score = 31.2 bits (69), Expect = 3.8
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPR----------------SARRGMSPPRNV--RXGMSPPR-TRSVQR 645
           M PP   RR  SP R                S+ R  SPP+    R   SPPR TR +  
Sbjct: 328 MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTVSSPPRKTRRLSP 387

Query: 644 GMSPPRSVRRGMSPP 600
             SPPR  R   SPP
Sbjct: 388 SASPPRR-RHRPSPP 401



 Score = 30.4 bits (67), Expect = 6.5
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 776 RKGMSPPISGR----RGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRR-G 612
           R+  SPP   R    R  SPP   R   SPP   R    PP  +  +R    P+S RR  
Sbjct: 572 RRSPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPK--RRASPSPQSKRRVS 629

Query: 611 MSPP 600
            SPP
Sbjct: 630 HSPP 633

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 37/88 (42%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
 Frame = -3

Query: 773 KGMSPPISG--RRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRG--MS 606
           K  SP +S   R+G SP RS R   SP  N R   S PR R+ Q   SPP  VRRG   S
Sbjct: 650 KRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPS-PRPRAPQTSSSPP-PVRRGASSS 707

Query: 605 PPRTYDHITRSSSHITRDAADTLRTHQP 522
           P R      +S S  TR      RT +P
Sbjct: 708 PQR-----RQSPSPSTRPIRRVSRTPEP 730



 Score = 40.0 bits (92), Expect = 0.008
 Identities = 38/110 (34%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
 Frame = -3

Query: 764 SPPISGRRGMSPPRSARRGM-SPPRNVRXGMSPPRTRSVQRGMSPPR---SVRRGMSPPR 597
           SPPI  R   SPP   R     PP   R   SPP  R V     P +    V +  SP  
Sbjct: 597 SPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSL 656

Query: 596 TYDHITRSS-SHITRDAADTLRTHQPYEDSSTMGIDRGQQTNGITPSGRR 450
           +  H   SS S  TR+A    R+ QP +  S     R  QT+   P  RR
Sbjct: 657 SSKHRKGSSPSRSTREA----RSPQPNKRHSPSPRPRAPQTSSSPPPVRR 702



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMS----PPRSARRGMSPPRNVRXGMSPPRTRSVQ-RGMSPPRSVRRG 612
           R+  SPP + RR       PPR  R    PPR  R    PPR RS   R  SPP   R  
Sbjct: 547 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYS 605

Query: 611 MSPP 600
            SPP
Sbjct: 606 PSPP 609



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPR----------------SARRGMSPPRNV--RXGMSPPRTRSVQRG 642
           M PP   RR  SP R                S+ R  SPP+    R    P +TR +   
Sbjct: 332 MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPS 391

Query: 641 MSPPRSVRRGMSPPRTYDHITRSS 570
            SPPR  R   SPP T    TR S
Sbjct: 392 ASPPRR-RHRPSPPATPPPKTRHS 414



 Score = 33.1 bits (74), Expect = 1.00
 Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARR----GMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGM 609
           +K  SP    RR  SPP + RR       PPR  R    PPR R+      PPR  RR  
Sbjct: 537 QKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS---PPPR--RRSP 591

Query: 608 SPPRTYDHITRSSS 567
           SP R    I R  S
Sbjct: 592 SPRRYSPPIQRRYS 605



 Score = 33.1 bits (74), Expect = 1.00
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRS-ARRGMSPPRNVRX---GMSPPRTRSVQRGMSPPRSVRRGMSP 603
           G S   S  R  SPP+   +R  SPPR  R      SPPR R      SPP +      P
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR---HRPSPPAT-----PP 408

Query: 602 PRTYDHITRSSSHITR 555
           P+T    T   S+ TR
Sbjct: 409 PKTRHSPTPQQSNRTR 424

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>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 26/58 (44%), Positives = 27/58 (46%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    GM P R A  GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPMGMPPGRGAPMGMPPP-----GMRPPPPG--MRGPPPP-----GMRPPR 239

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>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 26/58 (44%), Positives = 27/58 (46%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    GM P R A  GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPMGMPPGRGAPMGMPPP-----GMRPPPPG--MRGPPPP-----GMRPPR 239

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 38/111 (34%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
 Frame = -3

Query: 764 SPPISGRRGMSPPRSARRGM-SPPRNVRXGMSPPRTRSVQRGMSPPR---SVRRGMSPPR 597
           SPPI  R   SPP   R     PP   R   SPP  R V     P +    V +  SP  
Sbjct: 611 SPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSL 670

Query: 596 TYDHITRSS-SHITRDAADTLRTHQPYEDSSTMGIDRGQQTNGITPSGRRA 447
           +  H   SS S  TR+A    R+ QP +  S     R  QT+   P  R A
Sbjct: 671 SSKHRKGSSPSRSTREA----RSPQPNKRHSPSPRPRAPQTSSPPPVRRGA 717



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMS----PPRSARRGMSPPRNVRXGMSPPRTRSVQ-RGMSPPRSVRRG 612
           R+  SPP + RR       PPR  R    PPR  R    PPR RS   R  SPP   R  
Sbjct: 561 RRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYS 619

Query: 611 MSPP 600
            SPP
Sbjct: 620 PSPP 623



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPR----------------SARRGMSPPRNV--RXGMSPPRTRSVQRG 642
           M PP   RR  SP R                S+ R  SPP+    R    P +TR +   
Sbjct: 332 MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPS 391

Query: 641 MSPPRSVRRGMSPPRTYDHITRSS 570
            SPPR  R   SPP T    TR S
Sbjct: 392 ASPPRR-RHRPSPPATPPPKTRHS 414



 Score = 33.1 bits (74), Expect = 1.00
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRS-ARRGMSPPRNVRX---GMSPPRTRSVQRGMSPPRSVRRGMSP 603
           G S   S  R  SPP+   +R  SPPR  R      SPPR R      SPP +      P
Sbjct: 357 GSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRR---HRPSPPAT-----PP 408

Query: 602 PRTYDHITRSSSHITR 555
           P+T    T   S+ TR
Sbjct: 409 PKTRHSPTPQQSNRTR 424



 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/58 (39%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTR-----SVQRGMSPPRSVR 618
           RKG SP  S R   SP  + R   SP        SPP  R     S QR  SP  S R
Sbjct: 675 RKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASSSPQRRQSPSPSTR 732

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>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I|
          Length = 1794

 Score = 38.1 bits (87), Expect = 0.031
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -3

Query: 776 RKGMSPPISG--------RRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSV 621
           R GM P + G        R GM P    R GM P    R GM  P+   +Q+ M+P R+ 
Sbjct: 649 RTGMQPQMPGMQQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQ-PQMPGMQQPMAPQRTG 707

Query: 620 RRGMSPPRT 594
            + M P RT
Sbjct: 708 MQPMMPQRT 716



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSA--------RRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSV 621
           R GM P +  R GM P            R GM P    R GM P +   +Q+ M+P R+ 
Sbjct: 677 RTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQP-QMPGMQQPMAPQRTG 735

Query: 620 RRGMSPPRT 594
            + M+P RT
Sbjct: 736 MQPMAPQRT 744



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSA--------RRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSV 621
           R GM P +  R GM P            R GM P    R GM P +   +Q+ M+P R+ 
Sbjct: 611 RTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQP-QMPGMQQPMAPQRTG 669

Query: 620 RRGMSPPRT 594
            + M+P RT
Sbjct: 670 MQPMAPQRT 678



 Score = 36.2 bits (82), Expect = 0.12
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSA--------RRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSV 621
           R GM P +  R GM P  +         R GM P    R GM  P+   +Q+ M+P R+ 
Sbjct: 534 RTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQ-PQMPGMQQPMAPQRTG 592

Query: 620 RRGMSPPRT 594
            + M P RT
Sbjct: 593 MQPMMPQRT 601



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPR-SARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           R GM P +  R GM P     ++ M+P R     M P RT  +Q+ M+P R+  + M P 
Sbjct: 562 RTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRT-GMQQPMAPQRTGMQPMMPQ 620

Query: 599 RT 594
           RT
Sbjct: 621 RT 622



 Score = 35.0 bits (79), Expect = 0.26
 Identities = 23/61 (37%), Positives = 30/61 (49%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           R GM P + G +    P+  R GM P    R GM P  T   Q+ M+P R+  + M P R
Sbjct: 516 RTGMQPMMPGLQQPMAPQ--RTGMQPMMPQRTGMQPQMT-GFQQPMAPQRTGMQPMMPQR 572

Query: 596 T 594
           T
Sbjct: 573 T 573



 Score = 30.0 bits (66), Expect = 8.5
 Identities = 23/61 (37%), Positives = 25/61 (40%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           R GM P +  R GM P      GM  P      M+P RT     GM P    R GM P  
Sbjct: 705 RTGMQPMMPQRTGMQPQMP---GMQQP------MAPQRT-----GMQPMAPQRTGMQPQM 750

Query: 596 T 594
           T
Sbjct: 751 T 751

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 37.7 bits (86), Expect = 0.041
 Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
 Frame = -3

Query: 764 SPPISGRRGMSPPRSARRGM-SPPRNVRXGMSPPRTRSVQRGMSPPR---SVRRGMSPPR 597
           SPPI  R   SPP   R     PP   R   SPP  R V     P +   +V +  SP  
Sbjct: 616 SPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSL 675

Query: 596 TYDHITRSS-SHITRDAADTLRTHQPYEDSSTMGIDRGQQTNGITPSGRRA 447
           +  H   SS    TR+A    R+ QP +  S     R  QT+   P  R A
Sbjct: 676 SSKHRKGSSPGRSTREA----RSPQPNKRHSPSPRPRAPQTSSPPPVRRGA 722



 Score = 34.3 bits (77), Expect = 0.45
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 22/93 (23%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPR----------------SARRGMSPPRNV--RXGMSPPRTRSVQRG 642
           M PP   RR  SP R                S+ R  SPP+    R    P +TR +   
Sbjct: 330 MPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPS 389

Query: 641 MSPPRSVRRGMS----PPRTYDHITRSSSHITR 555
            SPPR   R  S    PP+T    T   S+ TR
Sbjct: 390 ASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTR 422



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTR-----SVQRGMSPPRSVR-- 618
           RKG SP  S R   SP  + R   SP        SPP  R     S Q   SP  S R  
Sbjct: 680 RKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPI 739

Query: 617 RGMSPPRTYDHITRSSSHITRDAADTLRTHQP 522
           R +S       I +++S  TR      RT +P
Sbjct: 740 RRVSRTPEPKKIKKAASPSTRPIRRVSRTPEP 771



 Score = 33.1 bits (74), Expect = 1.00
 Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMS-----------PPRSARRGMSPPRNVRXGMSPPRTRSVQ-RGMSP 633
           R+  SPP + RR              PPR  R    PPR  R    PPR RS   R  SP
Sbjct: 559 RRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRR-RTPSPPPRRRSPSPRRYSP 617

Query: 632 PRSVRRGMSPP 600
           P   R   SPP
Sbjct: 618 PIQRRYSPSPP 628



 Score = 32.3 bits (72), Expect = 1.7
 Identities = 31/104 (29%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRS---ARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMS 606
           R+  +PP   R    PPR    + R  SPP   R   SPP  R   R  SPP   +R  S
Sbjct: 589 RRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKR---RTASPPPPPKRRAS 645

Query: 605 P-PRTYDHITRSSSHITRDAADTLRTHQPYEDSSTMGIDRGQQT 477
           P P     ++ S     R    T R           G   G+ T
Sbjct: 646 PSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRST 689

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 37.0 bits (84), Expect = 0.069
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
 Frame = -3

Query: 773 KGMSPPISGRRGMSPPRSARRGMSPP--------RNVRXGMSPPRTRSVQRGMSPPRSVR 618
           +G  PP  G  G  PP  +R G  PP         N R G  PP     + G  PP    
Sbjct: 323 RGYGPPGRGGYGYGPPPGSRGGYGPPGRGGYGPGPNGRGGYGPP----PRGGYGPP---M 375

Query: 617 RGMSPPRTYDHITRSS 570
           RG +PP  Y +  R S
Sbjct: 376 RGRAPPPGYQYDRRGS 391

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>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and|
           B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
          Length = 240

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 24/58 (41%), Positives = 26/58 (44%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    G+ P R    GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPMGIPPGRGTPMGMPPP-----GMRPPPPG--MRGPPPP-----GMRPPR 239

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>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1|
          Length = 458

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 41/127 (32%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
 Frame = -3

Query: 773 KGMSPPISGRRGM--SPPRSARRGMSPPRNVRXGMSPPRTRSVQRGM--SPPRSVRR--- 615
           K  SPP   R     SPPR +R+      + R   SPPRTR  +     SPPR+  R   
Sbjct: 144 KDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDS 203

Query: 614 GMSPPRTYDHITRSSSHITRDAADTL---RTHQPYEDSSTM---GIDRGQQTNGITPSGR 453
             SPPR      R SS   R   D L   R  +  E+   +     D   +T+G T  G+
Sbjct: 204 DNSPPR-----RRPSSPARRRKDDDLSPPRKSRKIEEPKKIKKEEPDSDTETSGRTLEGK 258

Query: 452 RAYIPCA 432
           R+ +  A
Sbjct: 259 RSGLQSA 265



 Score = 32.3 bits (72), Expect = 1.7
 Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
 Frame = -3

Query: 764 SPPISGRR----GMSPPRSARR----GMSPPRNVRX------GMSPPRTRSVQRGMSPPR 627
           SPP   R+      SPPR +R+      SPPR  R         SPPR R      SPPR
Sbjct: 103 SPPRGKRQRHDSDNSPPRPSRKRNDSDNSPPRPSRNRHDSDKDNSPPRRRRHDSDNSPPR 162

Query: 626 SVRRGMSPPRTYDHITRSSSHITRDAADTLRTHQPYEDS-STMGIDRGQQTNGITPSGRR 450
             R+            R  S   R+     RT +   DS ++   +R ++ +  +P  RR
Sbjct: 163 PSRK-----------IREESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNSPPRRR 211

Query: 449 AYIPCAERNTVD 414
              P   R   D
Sbjct: 212 PSSPARRRKDDD 223

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>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 23/58 (39%), Positives = 26/58 (44%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    G+ P R    GM PP     GM PP      RG  PP     G+ PPR
Sbjct: 194 GMRPPMGPPMGIPPGRGTPMGMPPP-----GMRPPPPG--MRGPPPP-----GLRPPR 239



 Score = 35.0 bits (79), Expect = 0.26
 Identities = 22/56 (39%), Positives = 23/56 (41%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           M PP     GM PP     G+ P R    GM PP       GM PP    RG  PP
Sbjct: 189 MGPP----PGMRPPMGPPMGIPPGRGTPMGMPPP-------GMRPPPPGMRGPPPP 233

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>BAR2_CHITE (P02851) Balbiani ring protein 2 (Giant secretory protein I-B)|
           (GSP-IB) (Fragment)
          Length = 210

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 771 RHVSPDKWSK--RHVSPEKCSK--RHVSSKKCSXRHVSSKNKKCSKRHVSSKKCPKRH 610
           +H  P K SK  +H  PEKC    +   + KC+ ++    +K+C+   V     P +H
Sbjct: 85  KHSKPSKHSKPSKHSKPEKCGSAMKRTEAAKCARKNGRFNSKRCTCTSVGKPSKPSKH 142



 Score = 34.7 bits (78), Expect = 0.34
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 771 RHVSPDKWSK--RHVSPEKCSK--RHVSSKKCSXRHVSSKNKKCSKRHVSSKKCPKRH 610
           +H  P K SK  +H  PEKC    +   + KC+ ++    +K+C+   V     P +H
Sbjct: 11  KHSKPSKHSKPSKHSKPEKCGSAMKRTEAAKCARKNGRFNSKRCTCTSVGKPSKPSKH 68

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>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 24/58 (41%), Positives = 26/58 (44%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    G+ P R    GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPP-----GMRPPPPGI--RGPPPP-----GMRPPR 239



 Score = 34.7 bits (78), Expect = 0.34
 Identities = 22/56 (39%), Positives = 24/56 (42%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           M+PP     GM PP     G+ P R    GM PP       GM PP    RG  PP
Sbjct: 189 MAPP----PGMRPPMGPPIGLPPARGTPIGMPPP-------GMRPPPPGIRGPPPP 233

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>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 24/58 (41%), Positives = 26/58 (44%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    G+ P R    GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPP-----GMRPPPPGI--RGPPPP-----GMRPPR 239



 Score = 34.7 bits (78), Expect = 0.34
 Identities = 22/56 (39%), Positives = 24/56 (42%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           M+PP     GM PP     G+ P R    GM PP       GM PP    RG  PP
Sbjct: 189 MAPP----PGMRPPMGPPIGLPPARGTPIGMPPP-------GMRPPPPGIRGPPPP 233

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>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 24/58 (41%), Positives = 26/58 (44%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           GM PP+    G+ P R    GM PP     GM PP      RG  PP     GM PPR
Sbjct: 194 GMRPPMGPPIGLPPARGTPIGMPPP-----GMRPPPPGI--RGPPPP-----GMRPPR 239



 Score = 34.7 bits (78), Expect = 0.34
 Identities = 22/56 (39%), Positives = 24/56 (42%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           M+PP     GM PP     G+ P R    GM PP       GM PP    RG  PP
Sbjct: 189 MAPP----PGMRPPMGPPIGLPPARGTPIGMPPP-------GMRPPPPGIRGPPPP 233

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>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 118  LSQTTSEDIQDPQQSIAYTDKNAFPSKCSNVPGHMLLICAVVFRKAPP 261
            L + + + IQ+ Q++  YT + +  +K   +PG   L+ AV FR  PP
Sbjct: 983  LVEKSLQRIQNGQRNAMYTSQQSVENKVGGIPGWQALLTAVGFRLDPP 1030

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>SAM68_RAT (Q91V33) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSP 603
           PP+   RG+ PPR A    +P R      S  R  +V RG+ PP +VR   +P
Sbjct: 298 PPVPRGRGVGPPRGALVRGTPVRG-----SITRGATVTRGVPPPPTVRGAPTP 345

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>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSP 603
           PP+   RG+ PPR A    +P R      S  R  +V RG+ PP +VR   +P
Sbjct: 298 PPVPRGRGVGPPRGALVRGTPVRG-----SITRGATVTRGVPPPPTVRGAPTP 345

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>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
          Length = 1382

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 22/60 (36%), Positives = 24/60 (40%)
 Frame = -3

Query: 776  RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
            R+GM      RRGM   R  RRGM   R  R G+     R   R     R  RRG    R
Sbjct: 1080 RRGMDDDRGPRRGMDDDRGPRRGMDDDRGPRRGLDD--DRGPWRNADDDRIPRRGAEDDR 1137



 Score = 33.5 bits (75), Expect = 0.77
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -3

Query: 776  RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
            R+G+      RRGM   R  RRGM   R  R GM     R  +RG+   R   R     R
Sbjct: 1070 RRGLDDDRGPRRGMDDDRGPRRGMDDDRGPRRGMDD--DRGPRRGLDDDRGPWRNADDDR 1127

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>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type-1|
           retrotransposable element R2 (Retrovirus-related Pol
           polyprotein from type I retrotransposable element R2)
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease] (Fragment)
          Length = 1025

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
 Frame = -1

Query: 436 VLKEIPSTVTGLLNSMGLEKY---------VVLFQAEEVDMAALSQMKDSDLKDMGVPMG 284
           VL+ +P   TG L  MG EK          V+L +  E   A+LS++ ++ L++ G+ M 
Sbjct: 531 VLRRLPEN-TGFL--MGAEKIGALVFADDLVLLAETREGLQASLSRI-EAGLQEQGLEMM 586

Query: 283 PRKKILLAVAPYGKQR 236
           PRK   LA+ P GK++
Sbjct: 587 PRKCHTLALVPSGKEK 602

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>MTRM_DROYA (P83733) Protein matrimony (Cell cycle arrest protein D52)|
          Length = 219

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 418 STVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGV 293
           + V  +L  MGLE YV  F+   +D+  L+ M+ +DL  +G+
Sbjct: 162 ANVEQILMHMGLENYVTNFEEAHIDLVKLASMERADLVKIGL 203

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>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 746 RRGMSPPRS---ARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           +R  +PP+S   ARR  S  R  R   S   TRS ++  SP R + R  SP R
Sbjct: 321 KRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRR 373

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>YR871_MIMIV (Q5UP41) Hypothetical protein R871|
          Length = 561

 Score = 33.1 bits (74), Expect = 1.00
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 722 SARRGMSPPRNVRXGMSPPRTRSVQRGMSPP--RSVRRGMSPPRTYDHITRSSSHITRD 552
           S  R +S  R++    SPPR RS+ R  SPP  RS  R  SP R  D        ++RD
Sbjct: 218 SRDRSLSRDRSLSRDRSPPRDRSLSRDRSPPRNRSFSRYRSPLR--DRSPTRDRSVSRD 274



 Score = 30.8 bits (68), Expect = 5.0
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
 Frame = -2

Query: 765 VSPDKWSKRHVSPEKCSKRHVSSKKCSXRHVSSKNKKCSKRHVSSK--------KCPKRH 610
           +S D   +R V  E    +  S  K   R  S K  K SK+H SSK        K  KR 
Sbjct: 105 ISEDTDQERVVVCESLENKSSSKDKSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRD 164

Query: 609 VSAKNI*SYHKIF*SYHKR 553
            S+K   S+ K   S+ KR
Sbjct: 165 KSSKRHKSHKKKDKSHKKR 183



 Score = 30.0 bits (66), Expect = 8.5
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 774 KRHVSPDKW--SKRHVSP--EKCSKRHVSSKKCSXRHVSSKNKKCSKRHVSSKKCPKRHV 607
           KRH S  K   SK+H S   +K SKR  SSK+        K+ K   R  SS +   R  
Sbjct: 138 KRHKSSKKHKSSKKHKSSKHDKSSKRDKSSKRHKSHKKKDKSHKKRYRSPSSDRSLSRDR 197

Query: 606 SAKNI*SYHK 577
           S+    SY K
Sbjct: 198 SSSRDRSYKK 207

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>EWS_MOUSE (Q61545) RNA-binding protein EWS|
          Length = 655

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           PP++  RG  PPR   RGM PP  +R G   P       G    R   RG  PPR
Sbjct: 448 PPMNSMRGGMPPREG-RGMPPP--LRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 499

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>K0853_HUMAN (Q5T200) Protein KIAA0853|
          Length = 1668

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -3

Query: 752 SGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSV---QRGMSPPRSVRRGMSPPRTYDHI 582
           S RR  +P  S +R ++PP  +R   SP  + S+   QR  SPPR  R  M     +DH 
Sbjct: 348 SPRRKRTPSPSYQRTLTPP--LRRSASPYPSHSLSSPQRKQSPPRH-RSPMREKGRHDHE 404

Query: 581 TRSSSHITR 555
             S SH  R
Sbjct: 405 RTSQSHDRR 413

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>SAM68_HUMAN (Q07666) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSP 603
           PP+   RG+ PPR A    +P R      +  R  +V RG+ PP +VR   +P
Sbjct: 298 PPVPRGRGVGPPRGALVRGTPVRG-----AITRGATVTRGVPPPPTVRGAPAP 345

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>AMP_IMPBA (O24006) Antimicrobial peptides precursor (IB-AMP) [Contains: Basic|
           peptide AMP3 (IB-AMP3); Basic peptide AMP1-1
           (IB-AMP1-1); Basic peptide AMP1-2 (IB-AMP1-2); Basic
           peptide AMP1-3 (IB-AMP1-3); Basic peptide AMP2
           (IB-AMP2); Basic peptide AMP4 (
          Length = 333

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 288 WAPGRRYSLRWRLTENNGTDEQHVPWDV--GTFAGKC 184
           W PGRRY +RW    +N  DE   P DV  G +  +C
Sbjct: 205 WGPGRRYCVRWC---SNAADEVATPEDVEPGQYGRRC 238

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>GRPE_PEWBP (Q9KJU0) Protein grpE (HSP-70 cofactor)|
          Length = 264

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 726 EKCSKRHVSSKKCSXRHVSSKNKKCSKRHVSSKKCPKRHVSAKN 595
           E+CSK++ ++ K   +++   N  C ++ V SKK    H S+++
Sbjct: 8   EECSKQNTNNCKQHEKNIDENNCSCKEKKVQSKKVSSDHSSSED 51

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>ASPX_VULVU (P53353) Sperm acrosomal protein FSA-ACR.1 precursor (Fragment)|
          Length = 349

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 768 HVSPDKWSKRHVSPEKCSKRHVSSKKCSXRHVSSKNKKCSKRHVSSKKCPKRHVSAK 598
           H S +  S  H S E  S  H S +  S  H S   ++ +  H SS+     H S +
Sbjct: 62  HTSGEHTSVEHASAEHSSTEHTSGEHASGEHTS--GERATGEHTSSEHATSEHTSGE 116

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>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma|
           breakpoint region 1 protein)
          Length = 656

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 22/55 (40%), Positives = 25/55 (45%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPR 597
           PP++  RG  PPR   RGM PP  +R G   P       G    R   RG  PPR
Sbjct: 449 PPMNSMRGGLPPREG-RGMPPP--LRGGPGGPGGPGGPMGRMGGRGGDRGGFPPR 500

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>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 231

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGM 609
           M PP     GM PP     G+ P R    GM PP       GM PP    RG+
Sbjct: 189 MGPP----PGMRPPMGPPMGLPPGRGTPMGMPPP-------GMRPPPPGMRGL 230



 Score = 30.0 bits (66), Expect = 8.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 770 GMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPP 666
           GM PP+    G+ P R    GM PP     GM PP
Sbjct: 194 GMRPPMGPPMGLPPGRGTPMGMPPP-----GMRPP 223

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>MTRM_DROME (Q23973) Protein matrimony (Cell cycle arrest protein D52)|
          Length = 217

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 418 STVTGLLNSMGLEKYVVLFQAEEVDMAALSQMKDSDLKDMGV 293
           + V  +L  MGLE YV  F+   +D+  L+ ++ +DL  +G+
Sbjct: 160 ANVEQILMHMGLENYVTNFEEAHIDLVELASLERADLVKIGL 201

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>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment)
          Length = 214

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/53 (37%), Positives = 22/53 (41%)
 Frame = -3

Query: 767 MSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGM 609
           M PP     GM PP     G+ P R    GM PP       GM PP    RG+
Sbjct: 172 MGPP----PGMRPPMGPPMGIPPGRGTPMGMPPP-------GMRPPPPGMRGL 213

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>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,|
           arginine/serine-rich 2-interacting protein)
           (SC35-interacting protein 1) (CTD-associated SR protein
           11) (Splicing regulatory protein 129) (SRrp129)
           (NY-REN-40 antigen)
          Length = 1148

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
 Frame = -3

Query: 758 PISGRRGMSPPRSARRGMSPPRNV---RXGMSPPRTRSVQRGMSPP---RSVRRGMSPPR 597
           PIS   G   P ++   +S P +    +     P+ +SV+RG  PP   + +R  ++ P 
Sbjct: 24  PISDNSGCDAPGNSNPSLSVPSSAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPE 83

Query: 596 TYDHITRSSSHITRDAADT------LRTHQPYEDSSTM 501
                + S+  +  + A++       + HQP  DSS +
Sbjct: 84  K----SSSNDSVDEETAESDTSPVLEKEHQPDVDSSNI 117

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>TGT_STAAW (P66906) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAAS (Q6G8T0) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAAR (Q6GG65) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAAN (P66905) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAAM (P66904) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAAC (Q5HFC4) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++ +S    TR A   L  HQ  ED + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKKSIERTTRWAKRCLDAHQRPEDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = -3

Query: 743 RGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           R  SPPR   R + PP   R   SPPR R   R       VRR    P    H +RSSS+
Sbjct: 226 RRFSPPR---RMLPPPPMWRR--SPPRMRRRSRSPRRRSPVRRRSRSPARRRHRSRSSSN 280

Query: 563 ITR 555
            +R
Sbjct: 281 SSR 283

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>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043|
          Length = 1691

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 118  LSQTTSEDIQDPQQSIAYTDKNAFPSKCSNVPGHMLLICAVVFRKAP 258
            L + + + IQ+ Q++  YT + +  +K   +PG   L+ AV FR  P
Sbjct: 983  LVEKSLQRIQNGQRNAMYTSQQSVENKVGGIPGWQALLTAVGFRLDP 1029

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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 731 PPRSARRGMSPP-RNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           P   AR G   P R  R    PP    + RG  PP S  RG+ PP
Sbjct: 25  PEADARPGAKAPLRRRRDCRPPPPPTGLPRGPPPPPSPPRGLEPP 69

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 728 PRSARRGMSPPRNV-----RXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           PR   R  SPPR +         SPPR R   R       VRR    P    H +RSSS+
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302

Query: 563 ITR 555
            +R
Sbjct: 303 SSR 305

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 728 PRSARRGMSPPRNV-----RXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           PR   R  SPPR +         SPPR R   R       VRR    P    H +RSSS+
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302

Query: 563 ITR 555
            +R
Sbjct: 303 SSR 305

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 728 PRSARRGMSPPRNV-----RXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           PR   R  SPPR +         SPPR R   R       VRR    P    H +RSSS+
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302

Query: 563 ITR 555
            +R
Sbjct: 303 SSR 305

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 728 PRSARRGMSPPRNV-----RXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           PR   R  SPPR +         SPPR R   R       VRR    P    H +RSSS+
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302

Query: 563 ITR 555
            +R
Sbjct: 303 SSR 305

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -3

Query: 728 PRSARRGMSPPRNV-----RXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSH 564
           PR   R  SPPR +         SPPR R   R       VRR    P    H +RSSS+
Sbjct: 243 PRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302

Query: 563 ITR 555
            +R
Sbjct: 303 SSR 305

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>NCOA1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48) (NCoA-1)|
           (Steroid receptor coactivator 1) (SRC-1) (RIP160)
           (Protein Hin-2) (NY-REN-52 antigen)
          Length = 1441

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 710 GMSPPRNVRXGMSPPRTR-SVQRGMSPPRSVRRGMSPPRTYDHITRSSSHITRDAADTLR 534
           G+SP  +   GMS PR   SV   +SP   V R  + P +  ++   S+ I R  +  L 
Sbjct: 370 GLSPQDDTNSGMSIPRVNPSVNPSISPAHGVARSSTLPPSNSNMV--STRINRQQSSDLH 427

Query: 533 THQPYEDSSTMG 498
           +      S++ G
Sbjct: 428 SSSHSNSSNSQG 439

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>ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11 (Ankyrin|
            repeat-containing cofactor 1)
          Length = 2664

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 756  DKWSKRHVSPEKCSKRHVSSKKCSXRHVSSKNKKCSKRHVSSK 628
            DK +K+ + PEK  K+H +  K   +H    +K+ SK   SS+
Sbjct: 1232 DKKNKQKL-PEKAEKKHAAEDKAKSKHKEKSDKEHSKERKSSR 1273

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>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1407

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
 Frame = -3

Query: 713 RGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSHITRDAADTLR 534
           R  S   N    M PP T  V+R    PRS               R  S  T+  ++   
Sbjct: 106 RPPSDKSNTTLSMFPPETEPVERPAKRPRS--------------ERDESSYTQHRSNAFS 151

Query: 533 THQPYEDSSTMGIDRGQQTNGITPSGRRAYIPCAER-NTVDSY 408
             +P   S +M  D     N   P+     IP ++R NT DSY
Sbjct: 152 IARPPAISDSMKTDAELLLNFARPTNLYPPIPSSKRANTDDSY 194

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>BICD1_HUMAN (Q96G01) Cytoskeleton-like bicaudal D protein homolog 1|
          Length = 975

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 743 RGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSP 603
           RG+  PR ARRG+S P   R    P    S +    P  +    +SP
Sbjct: 556 RGLLSPRLARRGVSSPVETRTSSEPVAKESTEPSKEPSPTKTPTISP 602

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>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -3

Query: 773 KGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPP 630
           +G  PP +GR G  PP   R G  PP     G  P      + G  PP
Sbjct: 345 RGGGPPQNGRGGYGPPGRGRGGYGPPPRGYGGPGP------RGGRGPP 386

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>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 972

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = -2

Query: 738 HVSPEKCSKRHVSSKKCSXR-----HVSSKNKKCSKRHVSSKKCPKRHVSAKN 595
           H S    S +H SS K   R     H SS +   SK H SS +   RH S+ +
Sbjct: 38  HHSSSSSSSKHKSSSKDKHRDREREHKSSNSSSSSKEHKSSSRDKDRHKSSSS 90

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>YA4C_SCHPO (Q09729) Hypothetical protein C31A2.12 in chromosome I|
          Length = 596

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRTYDHITRSSSHITRDAADTLRTH 528
           ++PP+  S    +SP  S R+ +   R+++H T SSS I+   +     H
Sbjct: 501 VTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSSASLAH 550

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>TGT_STAES (Q8CML7) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++  S    TR AA  L+ HQ   D + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKDSIERTTRWAARCLKAHQRPGDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>TGT_STAEQ (Q5HNR2) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 379

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -3

Query: 677 MSPPRTRSVQRGMSPPRSVRRGMSPPRT--YDHITRSSSHITRDAADTLRTHQPYEDSST 504
           +SP ++  +Q  +     +     PP    YD++  S    TR AA  L+ HQ   D + 
Sbjct: 127 LSPEKSMQIQNDLGSDIMMAFDECPPMPAEYDYVKDSIERTTRWAARCLKAHQRPGDQAL 186

Query: 503 MGIDRG 486
            GI +G
Sbjct: 187 FGIIQG 192

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>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12|
            (Thyroid hormone receptor-associated protein complex 230
            kDa component) (Trap230) (Activator-recruited cofactor
            240 kDa component) (ARC240) (CAG repeat protein 45)
            (OPA-containin
          Length = 2212

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 776  RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
            +K   PP + + G +PP +  R     +  +   S P T++   GM P RS   G++ P
Sbjct: 1796 KKAPEPPKTDKPGAAPPSTEERKKKSTKGKK--RSQPATKTEDYGMGPGRSGPYGVTVP 1852

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>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -3

Query: 761 PPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSPP 600
           PP  G+    PP+   +   PP   R    PP   + Q+ + PP    +G  PP
Sbjct: 240 PPHPGKPQGPPPQEGNKPQRPPPPRRPQGPPPPGGNPQQPLPPPAGKPQGPPPP 293

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
 Frame = -3

Query: 764  SPPISGRRGMSPPRSAR--RGMSPPRNVRXGMSPPRTRSVQRGMSPPR----SVRRGMSP 603
            SP  S  R +S  RS    RG S  R+V    S   +RSV R  +PPR    + +RG   
Sbjct: 704  SPSRSVSRSISRSRSPAPIRGRSYSRSVSRSRSRSYSRSVSRSPTPPRRQAPAQQRGRQR 763

Query: 602  PRTYDHITRSSSHITRDAADTLRTHQPYEDSSTMGIDR-GQQTNGITPSG 456
              T    +RS S+         R+  P   S T   DR G Q +    SG
Sbjct: 764  SYTPSDRSRSRSY--------SRSRSPRGRSYTRSPDRAGPQASTAPRSG 805

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>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor) (G-protein coupled receptor
           PGR28)
          Length = 814

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 143 YKIRSRALLTPIKMHFPANVPTSQGTCCSSVPLFSVRRHRKEYLLPGAHRYSHI 304
           Y +R R      + HFP + P+S G             HR    +PGAH   H+
Sbjct: 597 YMVRRRRAAQRARSHFPGSAPSSVG-------------HRANRTVPGAHSRLHV 637

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -3

Query: 776 RKGMSPPISGRRGMSPPRSARRGMSPPRNVRXGMSPPRTRSVQRGMSPP 630
           R+  SP  S  R  SP RS  R  SPP   R      R  S  R  SPP
Sbjct: 121 RRSRSPRYS--RSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPP 167

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>NLAL2_ARATH (Q9FK53) Putative H/ACA ribonucleoprotein complex subunit 1-like|
           protein 2
          Length = 189

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = -3

Query: 710 GMSPPRNVRXGMSPPRTRSVQRGMSPPRSVRRGMSP 603
           G  PPR    G  PPR R   RG   PR   RG  P
Sbjct: 144 GRVPPR----GRGPPRGRGNFRGRGAPRGASRGFQP 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,122,884
Number of Sequences: 219361
Number of extensions: 2915354
Number of successful extensions: 9246
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 7953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9032
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8353746928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result