ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15m13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472785.1| Oryza sativa (japonica cultivar-group), predic... 101 3e-18
2dbj|AK102302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
3dbj|AK060688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
4emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 56 2e-04
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
6emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 56 2e-04
7gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, compl... 44 0.68
8dbj|AK086781.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 2.7
9gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, comple... 42 2.7
10gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 m... 42 2.7
11gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome ... 42 2.7
12emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on ch... 42 2.7 
>ref|XM_472785.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 265  ggagtatcttcttcctggggcccataggtactcccatatctttgaggtcgctatctttca 324
            |||| |||||||| || || ||||| ||||| || || || || ||||| || |||  ||
Sbjct: 1006 ggagaatcttctttctaggacccattggtacccctatttccttcaggtcactgtctccca 947

                                                                        
Query: 325  tctgactcaatgcagccatatcaacctcctcagcttgaaagagaacaacatacttctcaa 384
            |||||||||||||||||||||| ||||| ||||| || ||||| |  |||||||||||||
Sbjct: 946  tctgactcaatgcagccatatccacctcttcagcatggaagaggaagacatacttctcaa 887

                                           
Query: 385  gtcccattgaattcagtaatccagtaactgt 415
            |||| | ||||||||| || |||||||||||
Sbjct: 886  gtcctagtgaattcagcaacccagtaactgt 856



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 583 atatgatcatatgttcttggcggagacat 611
           |||||||||||||||||||  ||||||||
Sbjct: 656 atatgatcatatgttcttgagggagacat 628
to top
>dbj|AK102302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089O08, full
            insert sequence
          Length = 1625

 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 265  ggagtatcttcttcctggggcccataggtactcccatatctttgaggtcgctatctttca 324
            |||| |||||||| || || ||||| ||||| || || || || ||||| || |||  ||
Sbjct: 1200 ggagaatcttctttctaggacccattggtacccctatttccttcaggtcactgtctccca 1141

                                                                        
Query: 325  tctgactcaatgcagccatatcaacctcctcagcttgaaagagaacaacatacttctcaa 384
            |||||||||||||||||||||| ||||| ||||| || ||||| |  |||||||||||||
Sbjct: 1140 tctgactcaatgcagccatatccacctcttcagcatggaagaggaagacatacttctcaa 1081

                                           
Query: 385  gtcccattgaattcagtaatccagtaactgt 415
            |||| | ||||||||| || |||||||||||
Sbjct: 1080 gtcctagtgaattcagcaacccagtaactgt 1050



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 583 atatgatcatatgttcttggcggagacat 611
           |||||||||||||||||||  ||||||||
Sbjct: 850 atatgatcatatgttcttgagggagacat 822
to top
>dbj|AK060688.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A05, full
            insert sequence
          Length = 1703

 Score =  101 bits (51), Expect = 3e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                        
Query: 265  ggagtatcttcttcctggggcccataggtactcccatatctttgaggtcgctatctttca 324
            |||| |||||||| || || ||||| ||||| || || || || ||||| || |||  ||
Sbjct: 1299 ggagaatcttctttctaggacccattggtacccctatttccttcaggtcactgtctccca 1240

                                                                        
Query: 325  tctgactcaatgcagccatatcaacctcctcagcttgaaagagaacaacatacttctcaa 384
            |||||||||||||||||||||| ||||| ||||| || ||||| |  |||||||||||||
Sbjct: 1239 tctgactcaatgcagccatatccacctcttcagcatggaagaggaagacatacttctcaa 1180

                                           
Query: 385  gtcccattgaattcagtaatccagtaactgt 415
            |||| | ||||||||| || |||||||||||
Sbjct: 1179 gtcctagtgaattcagcaacccagtaactgt 1149



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 583 atatgatcatatgttcttggcggagacat 611
           |||||||||||||||||||  ||||||||
Sbjct: 949 atatgatcatatgttcttgagggagacat 921
to top
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 372   acatacttctcaagtcccattgaattcagtaatccagtaactgt 415
             ||||||||||||||||| | ||||||||| || |||||||||||
Sbjct: 97849 acatacttctcaagtcctagtgaattcagcaacccagtaactgt 97806



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 323   catctgactcaatgcagccatatcaacct 351
             |||||||||||||||||||||||| ||||
Sbjct: 98364 catctgactcaatgcagccatatccacct 98336



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 583   atatgatcatatgttcttggcggagacat 611
             |||||||||||||||||||  ||||||||
Sbjct: 97106 atatgatcatatgttcttgagggagacat 97078
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 372      acatacttctcaagtcccattgaattcagtaatccagtaactgt 415
                ||||||||||||||||| | ||||||||| || |||||||||||
Sbjct: 23207657 acatacttctcaagtcctagtgaattcagcaacccagtaactgt 23207614



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 323      catctgactcaatgcagccatatcaacct 351
                |||||||||||||||||||||||| ||||
Sbjct: 23208172 catctgactcaatgcagccatatccacct 23208144



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 583      atatgatcatatgttcttggcggagacat 611
                |||||||||||||||||||  ||||||||
Sbjct: 23206914 atatgatcatatgttcttgagggagacat 23206886
to top
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 372   acatacttctcaagtcccattgaattcagtaatccagtaactgt 415
             ||||||||||||||||| | ||||||||| || |||||||||||
Sbjct: 45810 acatacttctcaagtcctagtgaattcagcaacccagtaactgt 45767



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 323   catctgactcaatgcagccatatcaacct 351
             |||||||||||||||||||||||| ||||
Sbjct: 46325 catctgactcaatgcagccatatccacct 46297



 Score = 42.1 bits (21), Expect = 2.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 583   atatgatcatatgttcttggcggagacat 611
             |||||||||||||||||||  ||||||||
Sbjct: 45067 atatgatcatatgttcttgagggagacat 45039
to top
>gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, complete sequence
          Length = 207184

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 106    aaaaaaggttaactaagccaga 127
              ||||||||||||||||||||||
Sbjct: 127782 aaaaaaggttaactaagccaga 127803
to top
>dbj|AK086781.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030001E03 product:unclassifiable, full
           insert sequence
          Length = 1483

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 653 cacttcttgttcttggaggag 673
           |||||||||||||||||||||
Sbjct: 923 cacttcttgttcttggaggag 903
to top
>gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, complete sequence
          Length = 37057

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 315   ctatctttcatctgactcaatgcag 339
             |||||||||||||||| ||||||||
Sbjct: 27008 ctatctttcatctgacacaatgcag 27032
to top
>gb|AC116555.23| Mus musculus strain C57BL/6J clone rp23-160b14 map 8, complete sequence
          Length = 209784

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   tttctttcagcacaggggatg 444
             |||||||||||||||||||||
Sbjct: 17083 tttctttcagcacaggggatg 17063
to top
>gb|AC162949.7| Mus musculus BAC clone RP23-8D10 from chromosome 8, complete sequence
          Length = 228830

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   tttctttcagcacaggggatg 444
             |||||||||||||||||||||
Sbjct: 89360 tttctttcagcacaggggatg 89340
to top
>emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on chromosome 2, complete
             sequence
          Length = 241418

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 653   cacttcttgttcttggaggag 673
             |||||||||||||||||||||
Sbjct: 71397 cacttcttgttcttggaggag 71377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,277,101
Number of Sequences: 3902068
Number of extensions: 6277101
Number of successful extensions: 116609
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116547
Number of HSP's gapped (non-prelim): 62
length of query: 778
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 755
effective length of database: 17,143,297,704
effective search space: 12943189766520
effective search space used: 12943189766520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top