>TYSY_MESFL (Q6F145) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 288

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +1

Query: 190 PCLLHHIV---RPFHVRQLLQPPCHALFPAAARRDLLLQHRLGFHRSGRSLSFLFLAAPS 360
           P    HIV    P  V  +L PPCH+ +     +D  L  +L + RSG     +FL  P 
Sbjct: 147 PFSRRHIVSAWNPAEVDNMLLPPCHSFWQVYVSKDGWLDLQL-YQRSGD----VFLGVPF 201

Query: 361 HYRRQALLVD 390
           +    ALL++
Sbjct: 202 NIASYALLME 211

>MYOD1_HUMAN (P15172) Myoblast determination protein 1 (Myogenic factor 3)|
           (Myf-3)
          Length = 319

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
 Frame = +1

Query: 214 RPFHVRQLLQPPCHALFPAA------ARRDLLLQHRLGFHRSGRSLSFLFLA----APSH 363
           R  HV  LL+P  H+ FPAA      AR D  ++   G H++GR L +   A      + 
Sbjct: 49  RLMHVGALLKPEEHSHFPAAVHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNA 108

Query: 364 YRRQALLVDHRFRL 405
            RR+A  +  R RL
Sbjct: 109 DRRKAATMRERRRL 122

>RS6_NITOC (Q3JEJ6) 30S ribosomal protein S6|
          Length = 156

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 673 GKECGRR---HEAQGRDR-KGGGCVQEGHGRGRDEGSTAEATGRSQQTE 539
           G+E G R       GRDR + GG   +G   GRDE  + E T R +Q+E
Sbjct: 105 GEESGGRGYDSARSGRDRDESGGRGYDGARPGRDEDESKENTDRDEQSE 153

>MYOD1_SHEEP (P29331) Myoblast determination protein 1|
          Length = 319

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
 Frame = +1

Query: 214 RPFHVRQLLQPPCHALFPAA------ARRDLLLQHRLGFHRSGRSLSFLFLA----APSH 363
           R  HV  LL+P  H+ FPAA      AR D  ++   G H++GR L +   A      + 
Sbjct: 49  RLVHVGALLKPEEHSHFPAAAHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNA 108

Query: 364 YRRQALLVDHRFRL 405
            RR+A  +  R RL
Sbjct: 109 DRRKAATMRERRRL 122

>MYOD1_PIG (P49811) Myoblast determination protein 1|
          Length = 319

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
 Frame = +1

Query: 214 RPFHVRQLLQPPCHALFPAA------ARRDLLLQHRLGFHRSGRSLSFLFLA----APSH 363
           R  HV  LL+P  H+ FPAA      AR D  ++   G H++GR L +   A      + 
Sbjct: 49  RLVHVGALLKPEEHSHFPAAAHPAPGAREDEHVRAPSGHHQAGRCLLWACKACKRKTTNA 108

Query: 364 YRRQALLVDHRFRL 405
            RR+A  +  R RL
Sbjct: 109 DRRKAATMRERRRL 122

>DPHB_HALSA (Q9HQK6) Probable diphthine synthase (EC 2.1.1.98) (Diphthamide|
           biosynthesis methyltransferase)
          Length = 260

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +1

Query: 142 ADRESSDGDGD-----HLLVVPCLLHHIVRPFHVRQLLQPPCHAL 261
           ADR  +  D D     HLLVVP  LHHI R   +R+L   P  AL
Sbjct: 217 ADRLGALADADFGSPLHLLVVPGSLHHIERD-ALRELAGAPADAL 260


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,611,945
Number of Sequences: 219361
Number of extensions: 816239
Number of successful extensions: 2831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2821
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)