| Clone Name | rbags15m05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019068.1| Zea mays clone Contig631.F mRNA sequence Length = 1094 Score = 377 bits (190), Expect = e-101 Identities = 391/458 (85%) Strand = Plus / Plus Query: 103 tttttggcgtatgatatagccattgggttctctgggctgatcttgaaaccctggagggct 162 |||||||| || ||||||||||| |||||||| ||| |||||||||| || ||||| || Sbjct: 313 tttttggcataggatatagccatggggttctccggggtgatcttgaagccttggagagcc 372 Query: 163 tccattgcaaccatggactggttctcgtcctcatactccacaaaagcaatgcctggcttg 222 | ||| || |||||||||||| |||||||| ||||||||||||| |||||||| || Sbjct: 373 tgcatcgcgaccatggactggccgtcgtcctcgaactccacaaaagcgatgcctggttta 432 Query: 223 gcttcgatcatccgcacctcccggaaaccagggtattgctggaacaggatctggagcatc 282 |||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||| Sbjct: 433 gcttcgatcatccgtacttcccggaagccagggtactgctggaacaggatctggagcatc 492 Query: 283 acgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcggcggagcagct 342 | |||||| |||||||| |||| ||||||| |||||||||||||||||| || |||| | Sbjct: 493 atgctcgtggtctggtctggcagattctggatgaagaggatgttgttcggaggcgcaggt 552 Query: 343 ggctcttgcggaggcttggcaaaacgagaaggttgatgaccagttccattgcttggggcg 402 ||||| || | || |||| | | |||||| | ||||| ||||||||||||||| |||| Sbjct: 553 ggctcctgtgaagccttgcccagacgagacgcttgatagccagttccattgctttgggca 612 Query: 403 acaggagcattagcaccgggttgttgtccatcttcagttcgccgttttttctcagcagct 462 ||| |||||| || | ||||||| | ||||| ||||| |||||||||||||||||| Sbjct: 613 gcagcagcattgaggccagcttgttgtgcctcttctgttcgtcgttttttctcagcagct 672 Query: 463 ttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaaaa 522 |||||||||||||||||||||||||| ||||| ||||||| ||||||| |||| |||| | Sbjct: 673 ttctcctcttgcttcttccttttctccttaggtgcataagtaccatcttcttttgcaata 732 Query: 523 cagtcagactttgtttttgcatattgtacccgcatttt 560 ||||| || |||||||||||||||||||| |||||||| Sbjct: 733 cagtctgattttgtttttgcatattgtactcgcatttt 770
>gb|AY103846.1| Zea mays PCO130752 mRNA sequence Length = 1237 Score = 361 bits (182), Expect = 2e-96 Identities = 389/458 (84%) Strand = Plus / Minus Query: 103 tttttggcgtatgatatagccattgggttctctgggctgatcttgaaaccctggagggct 162 |||||||| || ||||||||||| |||||||| ||| |||||||||| || ||||| || Sbjct: 869 tttttggcataggatatagccatggggttctccggggtgatcttgaagccttggagagcc 810 Query: 163 tccattgcaaccatggactggttctcgtcctcatactccacaaaagcaatgcctggcttg 222 | ||| || |||||||||||| |||||||| ||||||||||||| |||||||| || Sbjct: 809 tgcatcgcgaccatggactggccgtcgtcctcgaactccacaaaagcgatgcctggttta 750 Query: 223 gcttcgatcatccgcacctcccggaaaccagggtattgctggaacaggatctggagcatc 282 |||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||| Sbjct: 749 gcttcgatcatccgtacttcccggaagccagggtactgctggaacaggatctggagcatc 690 Query: 283 acgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcggcggagcagct 342 | |||||| |||||||| |||| ||||||| |||||||||||||||||| || |||| | Sbjct: 689 atgctcgtggtctggtctggcagattctggatgaagaggatgttgttcggaggcgcaggt 630 Query: 343 ggctcttgcggaggcttggcaaaacgagaaggttgatgaccagttccattgcttggggcg 402 ||||| || | || |||| | | |||||| | ||||| ||||||||||||||| | || Sbjct: 629 ggctcctgtgaagccttgcccagacgagacgcttgatagccagttccattgctttgagca 570 Query: 403 acaggagcattagcaccgggttgttgtccatcttcagttcgccgttttttctcagcagct 462 ||| |||||| || | ||||||| | ||||| | ||| |||||||||||||||||| Sbjct: 569 gcagcagcattgaggccagcttgttgtgcctcttctgctcgtcgttttttctcagcagct 510 Query: 463 ttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaaaa 522 |||||||||||||||||||||||||| ||||| ||||||| ||||||| |||| |||| | Sbjct: 509 ttctcctcttgcttcttccttttctccttaggtgcataagtaccatcttcttttgcaata 450 Query: 523 cagtcagactttgtttttgcatattgtacccgcatttt 560 ||||| || |||||||||||||||||||| |||||||| Sbjct: 449 cagtctgattttgtttttgcatattgtactcgcatttt 412
>dbj|AK103337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126A09, full insert sequence Length = 919 Score = 343 bits (173), Expect = 4e-91 Identities = 394/467 (84%), Gaps = 3/467 (0%) Strand = Plus / Minus Query: 92 ggatcgttcactttttggcgtatgatatagccattgggttctctgggctgatcttgaaac 151 ||||| ||||||| || ||||| ||||||||||||||||| | |||| |||||||||||| Sbjct: 766 ggatcattcacttctttgcgtaggatatagccattgggttgtatggggtgatcttgaaac 707 Query: 152 cctggagggcttccattgcaaccatggactggttctcgtcctcatactccacaaaagcaa 211 |||| || |||| |||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct: 706 cctgcagagcttgcattgcaaccatagactggctgtcgtcctcgtattccacaaaagcaa 647 Query: 212 tgcctggcttggcttcgatcatccgcacctcccggaaaccagggtattgctggaacagga 271 ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| Sbjct: 646 tgcctggcttggcttcgatcatccggacttccctgaaaccagggtactgctggaacagga 587 Query: 272 tctggagcatcacgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcg 331 |||||||||||| ||| || |||| | || |||||||||| ||| ||||| ||||| | Sbjct: 586 tctggagcatcatgcttgtagtctcagctggtaagttctggatgaaaaggatattgtttg 527 Query: 332 gcggagcagctggctcttgcggaggcttggcaaaacgagaaggttgatgaccagttccat 391 | || |||| ||||||||||| || |||| | | || || | ||||| |||||| |||| Sbjct: 526 gaggtgcaggtggctcttgcgaagtcttgcccaggcgtgaggcttgataaccagtcccat 467 Query: 392 tgcttggggcgacaggagcattagcaccgggttgttgtccatcttcagttcgccgttttt 451 ||||| ||| ||| |||||||| ||| | |||||| | ||||||| ||| ||||||| Sbjct: 466 tgctttggg---cagcagcattaggaccagattgttgcgcctcttcagctcgtcgttttt 410 Query: 452 tctcagcagctttctcctcttgcttcttccttttctctttaggagcataagaaccatctg 511 |||| || |||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct: 409 tctccgctgctttctcctcttgcttctttcttttctcttttggagcagtagaaccatctt 350 Query: 512 ctttggcaaaacagtcagactttgtttttgcatattgtacccgcatt 558 | | |||| ||||||||| ||||||| ||||||||||| |||||| Sbjct: 349 cggttgcaagacagtcagatcttgttttcgcatattgtactcgcatt 303
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 248 bits (125), Expect = 2e-62 Identities = 227/261 (86%) Strand = Plus / Plus Query: 92 ggatcgttcactttttggcgtatgatatagccattgggttctctgggctgatcttgaaac 151 ||||| ||||||| || ||||| ||||||||||||||||| | |||| |||||||||||| Sbjct: 10450604 ggatcattcacttctttgcgtaggatatagccattgggttgtatggggtgatcttgaaac 10450663 Query: 152 cctggagggcttccattgcaaccatggactggttctcgtcctcatactccacaaaagcaa 211 |||| || |||| |||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct: 10450664 cctgcagagcttgcattgcaaccatagactggctgtcgtcctcgtattccacaaaagcaa 10450723 Query: 212 tgcctggcttggcttcgatcatccgcacctcccggaaaccagggtattgctggaacagga 271 ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| Sbjct: 10450724 tgcctggcttggcttcgatcatccggacttccctgaaaccagggtactgctggaacagga 10450783 Query: 272 tctggagcatcacgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcg 331 |||||||||||| ||| || |||| | || |||||||||| ||| ||||| ||||| | Sbjct: 10450784 tctggagcatcatgcttgtagtctcagctggtaagttctggatgaaaaggatattgtttg 10450843 Query: 332 gcggagcagctggctcttgcg 352 | || |||| ||||||||||| Sbjct: 10450844 gaggtgcaggtggctcttgcg 10450864 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaa 520 ||||||||||||||||||| ||||||||||| |||||| |||||||||| | | |||| Sbjct: 10452955 ctttctcctcttgcttctttcttttctcttttggagcagtagaaccatcttcggttgcaa 10453014 Query: 521 aacagtcagactttgtttttgcatattgtac 551 ||||||||| ||||||| ||||||||||| Sbjct: 10453015 gacagtcagatcttgttttcgcatattgtac 10453045 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttttctc 488 |||||| ||||||||||||||||| Sbjct: 21481089 ctcctcctgcttcttccttttctc 21481112
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 248 bits (125), Expect = 2e-62 Identities = 227/261 (86%) Strand = Plus / Plus Query: 92 ggatcgttcactttttggcgtatgatatagccattgggttctctgggctgatcttgaaac 151 ||||| ||||||| || ||||| ||||||||||||||||| | |||| |||||||||||| Sbjct: 107157 ggatcattcacttctttgcgtaggatatagccattgggttgtatggggtgatcttgaaac 107216 Query: 152 cctggagggcttccattgcaaccatggactggttctcgtcctcatactccacaaaagcaa 211 |||| || |||| |||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct: 107217 cctgcagagcttgcattgcaaccatagactggctgtcgtcctcgtattccacaaaagcaa 107276 Query: 212 tgcctggcttggcttcgatcatccgcacctcccggaaaccagggtattgctggaacagga 271 ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| Sbjct: 107277 tgcctggcttggcttcgatcatccggacttccctgaaaccagggtactgctggaacagga 107336 Query: 272 tctggagcatcacgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcg 331 |||||||||||| ||| || |||| | || |||||||||| ||| ||||| ||||| | Sbjct: 107337 tctggagcatcatgcttgtagtctcagctggtaagttctggatgaaaaggatattgtttg 107396 Query: 332 gcggagcagctggctcttgcg 352 | || |||| ||||||||||| Sbjct: 107397 gaggtgcaggtggctcttgcg 107417 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaa 520 ||||||||||||||||||| ||||||||||| |||||| |||||||||| | | |||| Sbjct: 109508 ctttctcctcttgcttctttcttttctcttttggagcagtagaaccatcttcggttgcaa 109567 Query: 521 aacagtcagactttgtttttgcatattgtac 551 ||||||||| ||||||| ||||||||||| Sbjct: 109568 gacagtcagatcttgttttcgcatattgtac 109598
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 248 bits (125), Expect = 2e-62 Identities = 227/261 (86%) Strand = Plus / Plus Query: 92 ggatcgttcactttttggcgtatgatatagccattgggttctctgggctgatcttgaaac 151 ||||| ||||||| || ||||| ||||||||||||||||| | |||| |||||||||||| Sbjct: 6417 ggatcattcacttctttgcgtaggatatagccattgggttgtatggggtgatcttgaaac 6476 Query: 152 cctggagggcttccattgcaaccatggactggttctcgtcctcatactccacaaaagcaa 211 |||| || |||| |||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct: 6477 cctgcagagcttgcattgcaaccatagactggctgtcgtcctcgtattccacaaaagcaa 6536 Query: 212 tgcctggcttggcttcgatcatccgcacctcccggaaaccagggtattgctggaacagga 271 ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| Sbjct: 6537 tgcctggcttggcttcgatcatccggacttccctgaaaccagggtactgctggaacagga 6596 Query: 272 tctggagcatcacgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcg 331 |||||||||||| ||| || |||| | || |||||||||| ||| ||||| ||||| | Sbjct: 6597 tctggagcatcatgcttgtagtctcagctggtaagttctggatgaaaaggatattgtttg 6656 Query: 332 gcggagcagctggctcttgcg 352 | || |||| ||||||||||| Sbjct: 6657 gaggtgcaggtggctcttgcg 6677 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaa 520 ||||||||||||||||||| ||||||||||| |||||| |||||||||| | | |||| Sbjct: 8768 ctttctcctcttgcttctttcttttctcttttggagcagtagaaccatcttcggttgcaa 8827 Query: 521 aacagtcagactttgtttttgcatattgtac 551 ||||||||| ||||||| ||||||||||| Sbjct: 8828 gacagtcagatcttgttttcgcatattgtac 8858
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 248 bits (125), Expect = 2e-62 Identities = 227/261 (86%) Strand = Plus / Plus Query: 92 ggatcgttcactttttggcgtatgatatagccattgggttctctgggctgatcttgaaac 151 ||||| ||||||| || ||||| ||||||||||||||||| | |||| |||||||||||| Sbjct: 10448705 ggatcattcacttctttgcgtaggatatagccattgggttgtatggggtgatcttgaaac 10448764 Query: 152 cctggagggcttccattgcaaccatggactggttctcgtcctcatactccacaaaagcaa 211 |||| || |||| |||||||||||| |||||| | |||||||| || ||||||||||||| Sbjct: 10448765 cctgcagagcttgcattgcaaccatagactggctgtcgtcctcgtattccacaaaagcaa 10448824 Query: 212 tgcctggcttggcttcgatcatccgcacctcccggaaaccagggtattgctggaacagga 271 ||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| Sbjct: 10448825 tgcctggcttggcttcgatcatccggacttccctgaaaccagggtactgctggaacagga 10448884 Query: 272 tctggagcatcacgctcgtcgtctggtccggcaagttctggaggaagaggatgttgttcg 331 |||||||||||| ||| || |||| | || |||||||||| ||| ||||| ||||| | Sbjct: 10448885 tctggagcatcatgcttgtagtctcagctggtaagttctggatgaaaaggatattgtttg 10448944 Query: 332 gcggagcagctggctcttgcg 352 | || |||| ||||||||||| Sbjct: 10448945 gaggtgcaggtggctcttgcg 10448965 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaa 520 ||||||||||||||||||| ||||||||||| |||||| |||||||||| | | |||| Sbjct: 10451056 ctttctcctcttgcttctttcttttctcttttggagcagtagaaccatcttcggttgcaa 10451115 Query: 521 aacagtcagactttgtttttgcatattgtac 551 ||||||||| ||||||| ||||||||||| Sbjct: 10451116 gacagtcagatcttgttttcgcatattgtac 10451146 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttttctc 488 |||||| ||||||||||||||||| Sbjct: 21474118 ctcctcctgcttcttccttttctc 21474141
>dbj|D10958.1|RIC389U2B Oryza sativa mRNA for U2 small nuclear RNA-associated B antigen Length = 377 Score = 117 bits (59), Expect = 4e-23 Identities = 128/151 (84%) Strand = Plus / Minus Query: 408 agcattagcaccgggttgttgtccatcttcagttcgccgttttttctcagcagctttctc 467 |||||||| ||| | |||||| | ||||||| ||| ||||||||||| || |||||||| Sbjct: 256 agcattaggaccagattgttgcgcctcttcagctcgtcgttttttctccgctgctttctc 197 Query: 468 ctcttgcttcttccttttctctttaggagcataagaaccatctgctttggcaaaacagtc 527 |||||||||||| ||||||||||| |||||| |||||||||| | | |||| |||||| Sbjct: 196 ctcttgcttctttcttttctcttttggagcagtagaaccatcttcggttgcaagacagtc 137 Query: 528 agactttgtttttgcatattgtacccgcatt 558 ||| ||||||| ||||||||||| |||||| Sbjct: 136 agatcttgttttcgcatattgtactcgcatt 106
>gb|AY111018.1| Zea mays CL6482_1 mRNA sequence Length = 1143 Score = 67.9 bits (34), Expect = 3e-08 Identities = 109/134 (81%) Strand = Plus / Minus Query: 180 ctggttctcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcatccgcac 239 |||| ||||||| |||||||||| |||||||| || ||||| || ||||||||||| || Sbjct: 745 ctgggtctcgtctccatactccacgaaagcaatcccaggcttcgcctcgatcatccgaac 686 Query: 240 ctcccggaaaccagggtattgctggaacaggatctggagcatcacgctcgtcgtctggtc 299 |||| ||| |||||||| || ||| || ||||||||||||| | |||||||| || Sbjct: 685 ctccttgaagccagggtactggcagaagagcatctggagcatcatgggcgtcgtctcgtg 626 Query: 300 cggcaagttctgga 313 |||||||| |||| Sbjct: 625 tggcaagttttgga 612
>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence Length = 118829 Score = 50.1 bits (25), Expect = 0.008 Identities = 34/37 (91%) Strand = Plus / Plus Query: 512 ctttggcaaaacagtcagactttgtttttgcatattg 548 |||| |||| |||||| |||||||||||||||||||| Sbjct: 94765 ctttagcaacacagtctgactttgtttttgcatattg 94801
>ref|NM_180605.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960 transcript variant AT1G06960.1 mRNA, complete cds Length = 937 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 187 tcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcat 233 ||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct: 680 tcgtcttcatactccacaaacgcaattccgggttttgcttcgatcat 634 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 529 gactttgtttttgcatattgtacccgcat 557 ||||||| |||||||||||||| |||||| Sbjct: 350 gactttgattttgcatattgtatccgcat 322
>ref|NM_100569.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960 transcript variant AT1G06960.2 mRNA, complete cds Length = 965 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 187 tcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcat 233 ||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct: 678 tcgtcttcatactccacaaacgcaattccgggttttgcttcgatcat 632 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 529 gactttgtttttgcatattgtacccgcat 557 ||||||| |||||||||||||| |||||| Sbjct: 351 gactttgattttgcatattgtatccgcat 323
>gb|AY142487.1| Arabidopsis thaliana putative spliceosomal protein (U2B) (At1g06960) mRNA, complete cds Length = 721 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 187 tcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcat 233 ||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct: 602 tcgtcttcatactccacaaacgcaattccgggttttgcttcgatcat 556 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 529 gactttgtttttgcatattgtacccgcat 557 ||||||| |||||||||||||| |||||| Sbjct: 272 gactttgattttgcatattgtatccgcat 244
>gb|AY080742.1| Arabidopsis thaliana putative spliceosomal protein (U2B) (At1g06960) mRNA, complete cds Length = 981 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 187 tcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcat 233 ||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct: 678 tcgtcttcatactccacaaacgcaattccgggttttgcttcgatcat 632 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 529 gactttgtttttgcatattgtacccgcat 557 ||||||| |||||||||||||| |||||| Sbjct: 351 gactttgattttgcatattgtatccgcat 323
>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11, complete sequence Length = 230487 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 462 tttctcctcttgcttcttccttttctc 488 ||||||||||| ||||||||||||||| Sbjct: 144419 tttctcctctttcttcttccttttctc 144445
>ref|XM_627427.1| Cryptosporidium parvum Iowa II PP2Cc like protein phosphatase (cgd6_440), partial mRNA Length = 1602 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 49 gaaaatcttatagttacagaatt 71 ||||||||||||||||||||||| Sbjct: 967 gaaaatcttatagttacagaatt 989
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111464 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 187 tcgtcctcatactccacaaaagcaatgcctggcttggcttcgatcat 233 ||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct: 104115 tcgtcttcatactccacaaacgcaattccgggttttgcttcgatcat 104161
>gb|AC073539.3|AC073539 Homo sapiens chromosome 19 clone RP11-157B13, complete sequence Length = 184213 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 50 aaaatcttatagttacagaattttctt 76 |||||||||||||||| |||||||||| Sbjct: 153111 aaaatcttatagttactgaattttctt 153085
>gb|AC011482.4|AC011482 Homo sapiens chromosome 19 clone CTB-135N1, complete sequence Length = 129108 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 50 aaaatcttatagttacagaattttctt 76 |||||||||||||||| |||||||||| Sbjct: 12773 aaaatcttatagttactgaattttctt 12747
>gb|AC004026.1|AC004026 Homo sapiens chromosome 19, cosmid R29351, complete sequence Length = 36156 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Plus Query: 50 aaaatcttatagttacagaattttctt 76 |||||||||||||||| |||||||||| Sbjct: 4370 aaaatcttatagttactgaattttctt 4396
>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence Length = 222682 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttttctctt 490 |||||||| ||||||||||||||||| Sbjct: 218389 ctcctcttccttcttccttttctctt 218414
>gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, complete sequence Length = 158925 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttttctctt 490 |||||||| ||||||||||||||||| Sbjct: 15093 ctcctcttccttcttccttttctctt 15118
>emb|CR936845.11| Mouse DNA sequence from clone DN-279H6 on chromosome 11, complete sequence Length = 101662 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 483 tttctctttaggagcataagaaccat 508 ||||||||||| |||||||||||||| Sbjct: 70894 tttctctttagcagcataagaaccat 70869
>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the Rabep1 gene for rabaptin, RAB GTPase binding effector protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene for nucleoporin 88, four novel genes, the C1qbp gene for complement component 1 q subcomponent binding protein, the Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33, a novel pseudogene, a CARD domain pseudogene and six CpG islands, complete sequence Length = 254116 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 483 tttctctttaggagcataagaaccat 508 ||||||||||| |||||||||||||| Sbjct: 83468 tttctctttagcagcataagaaccat 83443
>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence Length = 207840 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 450 tttctcagcagctttctcctcttgcttctt 479 |||||||||||||| |||||||| |||||| Sbjct: 127527 tttctcagcagcttcctcctcttccttctt 127498
>gb|AC165307.6| Mus musculus chromosome 3, clone RP24-372I24, complete sequence Length = 136853 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 469 tcttgcttcttccttttctctttaggagc 497 |||| ||||||||||| |||||||||||| Sbjct: 130572 tctttcttcttcctttcctctttaggagc 130600
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 ttgcttcttccttttctcttt 491 ||||||||||||||||||||| Sbjct: 1417006 ttgcttcttccttttctcttt 1417026
>gb|AC098705.2| Mus musculus BAC clone RP23-1B19 from 3, complete sequence Length = 202444 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 469 tcttgcttcttccttttctctttaggagc 497 |||| ||||||||||| |||||||||||| Sbjct: 67291 tctttcttcttcctttcctctttaggagc 67319
>ref|XM_948010.1| Theileria annulata strain Ankara hypothetical protein (TA08445) partial mRNA Length = 1014 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 aagcaatgcctggcttggctt 226 ||||||||||||||||||||| Sbjct: 16 aagcaatgcctggcttggctt 36
>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the 3' end of the UTRN gene for utrophin (homologous to dystrophin), complete sequence Length = 201399 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tcctcttgcttcttccttttctctt 490 |||||||||||||||| |||||||| Sbjct: 199914 tcctcttgcttcttccatttctctt 199890
>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence Length = 141868 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 cttgcttcttccttttctctt 490 ||||||||||||||||||||| Sbjct: 135758 cttgcttcttccttttctctt 135738
>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE Length = 199033 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 512 ctttggcaaaacagtcagactttgtttttgcatattg 548 |||| |||| ||| || |||||||||||||||||||| Sbjct: 166750 ctttagcaatacaatctgactttgtttttgcatattg 166786
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence Length = 111620 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 512 ctttggcaaaacagtcagactttgtttttgcatattg 548 |||| |||| ||| || |||||||||||||||||||| Sbjct: 95732 ctttagcaatacaatctgactttgtttttgcatattg 95696
>ref|XM_686320.1| PREDICTED: Danio rerio similar to chromatin assembly factor 1, subunit A (p150) (LOC562953), mRNA Length = 3661 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tcctcttgcttcttccttttctctt 490 ||||||| ||||||||||||||||| Sbjct: 1290 tcctcttccttcttccttttctctt 1266
>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence Length = 177717 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tcctcttgcttcttccttttctctt 490 |||||||||| |||||||||||||| Sbjct: 115297 tcctcttgctgcttccttttctctt 115273
>emb|AL935286.14| Zebrafish DNA sequence from clone CH211-198E14 in linkage group 22, complete sequence Length = 211297 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 tcctcttgcttcttccttttctctt 490 ||||||| ||||||||||||||||| Sbjct: 186311 tcctcttccttcttccttttctctt 186287
>gb|AC011303.9| Homo sapiens BAC clone RP11-342D6 from 2, complete sequence Length = 188616 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 ttcttccttttctctttagga 495 ||||||||||||||||||||| Sbjct: 161276 ttcttccttttctctttagga 161256
>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence Length = 169399 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 cttgcttcttccttttctctt 490 ||||||||||||||||||||| Sbjct: 160805 cttgcttcttccttttctctt 160825
>gb|AC122369.5| Mus musculus BAC clone RP23-454D13 from chromosome 6, complete sequence Length = 203593 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 aaagccagcacagcagcttga 36 ||||||||||||||||||||| Sbjct: 112365 aaagccagcacagcagcttga 112345
>gb|U41991.1| Caenorhabditis elegans cosmid C42D4, complete sequence Length = 35214 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 445 cgttttttctcagcagctttctcct 469 |||||||||||| |||||||||||| Sbjct: 10102 cgttttttctcatcagctttctcct 10078
>gb|AC116788.14| Mus musculus chromosome 8, clone RP24-296N13, complete sequence Length = 164158 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 530 actttgtttttgcatattgtaccc 553 |||||||||||||||||| ||||| Sbjct: 158406 actttgtttttgcatattataccc 158383
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 117113 tcttccttttctctttagga 117094
>ref|NM_026291.1| Mus musculus RIKEN cDNA 4930522H14 gene (4930522H14Rik), mRNA Length = 818 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tgcttcttccttttctcttt 491 |||||||||||||||||||| Sbjct: 356 tgcttcttccttttctcttt 337
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 97733 tcttccttttctctttagga 97714
>ref|XM_593787.2| PREDICTED: Bos taurus similar to cysteinyl-tRNA synthetase (LOC515715), partial mRNA Length = 1614 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ctcctcttgcttcttccttttctc 488 |||||||| ||||||||||||||| Sbjct: 1244 ctcctctttcttcttccttttctc 1221
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttttctc 488 |||||| ||||||||||||||||| Sbjct: 174000 ctcctcctgcttcttccttttctc 174023
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttttctcagcagctttctc 467 |||||||||||||||||||| Sbjct: 807478 tttttctcagcagctttctc 807459
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttttctcagcagctttctc 467 |||||||||||||||||||| Sbjct: 807373 tttttctcagcagctttctc 807354
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence Length = 200592 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttt 484 |||||||||||| ||||||||||| Sbjct: 92227 ctttctcctcttccttcttccttt 92250
>ref|XM_454122.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E03850g predicted mRNA Length = 3399 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 agcttagggtggaaaatctt 57 |||||||||||||||||||| Sbjct: 2332 agcttagggtggaaaatctt 2351
>ref|XM_753858.1| Ustilago maydis 521 hypothetical protein (UM02804.1) partial mRNA Length = 3468 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 acgctcgtcgtctggtccggcaag 306 ||||||||||||||||||| |||| Sbjct: 649 acgctcgtcgtctggtccgacaag 672
>ref|XM_383410.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03234.1) partial mRNA Length = 1917 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tagaaagccagcacagcagc 32 |||||||||||||||||||| Sbjct: 608 tagaaagccagcacagcagc 627
>ref|XM_447487.1| Candida glabrata CBS138 hypothetical protein (CAGL0I05478g) partial mRNA Length = 741 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 461 ctttctcctcttgcttcttccttt 484 ||||||||||||||||| |||||| Sbjct: 520 ctttctcctcttgcttcctccttt 497
>gb|AC126433.3| Mus musculus BAC clone RP24-468I23 from chromosome 17, complete sequence Length = 165036 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttt 484 |||||||||||||||||| ||||| Sbjct: 105567 ctttctcctcttgcttctcccttt 105590
>gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complete sequence Length = 183325 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttt 484 |||||||||||| ||||||||||| Sbjct: 130699 ctttctcctcttccttcttccttt 130722
>ref|XM_537243.2| PREDICTED: Canis familiaris similar to G patch domain containing 4 protein isoform 2 (LOC480121), mRNA Length = 932 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 460 gctttctcctcttgcttcttccttttct 487 ||||||||||||| || ||||||||||| Sbjct: 742 gctttctcctctttctgcttccttttct 715
>gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence Length = 176345 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tagttacagaattttctttt 78 |||||||||||||||||||| Sbjct: 77020 tagttacagaattttctttt 77001
>gb|BC044979.1| Xenopus laevis sans fille, mRNA (cDNA clone MGC:52976 IMAGE:4930667), complete cds Length = 1228 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gaggaagaggatgttgttcggcgg 335 |||||||||||||| ||||||||| Sbjct: 685 gaggaagaggatgtggttcggcgg 662
>gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, complete sequence Length = 165789 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 461 ctttctcctcttgcttcttccttt 484 |||||||||||| ||||||||||| Sbjct: 57103 ctttctcctctttcttcttccttt 57080
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttttctcagcagctttctc 467 |||||||||||||||||||| Sbjct: 790393 tttttctcagcagctttctc 790374
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence Length = 142659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tcctcttgcttcttcctttt 485 |||||||||||||||||||| Sbjct: 24777 tcctcttgcttcttcctttt 24796
>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ttttttctcagcagctttct 466 |||||||||||||||||||| Sbjct: 113411 ttttttctcagcagctttct 113430
>ref|NM_001001419.1| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 2, mRNA Length = 7096 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 7040 actttgtttttgcatattgt 7059
>ref|NM_005903.5| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 1, mRNA Length = 7012 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 6956 actttgtttttgcatattgt 6975
>ref|NM_001001420.1| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 3, mRNA Length = 6937 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 6881 actttgtttttgcatattgt 6900
>emb|AL353616.14| Human DNA sequence from clone RP11-274B18 on chromosome 9 Contains the 3' end of the PGM5 gene for phosphoglucomutase 5 (PGMRP), a novel gene (MGC34760), a squamous cell carcinoma antigen recognized by T cell (SART2) pseudogene and 2 novel genes, complete sequence Length = 169993 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 tttctcctcttgcttcttcctttt 485 ||||||||||| |||||||||||| Sbjct: 142985 tttctcctctttcttcttcctttt 142962
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 226532 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 ctcctcttgcttcttccttt 484 |||||||||||||||||||| Sbjct: 211711 ctcctcttgcttcttccttt 211730
>emb|AL160159.12| Human DNA sequence from clone RP11-71K7 on chromosome 13, complete sequence Length = 129575 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 agttacagaattttcttttg 79 |||||||||||||||||||| Sbjct: 89807 agttacagaattttcttttg 89788
>emb|AL022161.1|HS380C13 Human DNA sequence from clone RP3-380C13 on chromosome Xq22.1-22.3 Contains a calmodulin 2 (phosphorylase kinase, delta) (CALM2) pseudogene, complete sequence Length = 139444 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 18 agccagcacagcagcttgaaagcttagg 45 |||||||| |||||||||||| |||||| Sbjct: 122345 agccagcagagcagcttgaaaacttagg 122318
>ref|XM_784220.1| PREDICTED: Strongylocentrotus purpuratus similar to Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) (LOC584359), mRNA Length = 3742 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ctcctcttgcttcttccttttctc 488 |||||||||||||||| ||||||| Sbjct: 1291 ctcctcttgcttcttctttttctc 1268
>emb|X57953.1|XLU1AA X.laevis U1 A mRNA Length = 1180 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gaggaagaggatgttgttcggcgg 335 |||||||||||||| ||||||||| Sbjct: 689 gaggaagaggatgtggttcggcgg 666
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 agcttagggtggaaaatctt 57 |||||||||||||||||||| Sbjct: 360062 agcttagggtggaaaatctt 360043
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 ctttctcctcttgcttcttccttt 484 ||||||||||||||||| |||||| Sbjct: 519154 ctttctcctcttgcttcctccttt 519177
>gb|AC022418.5| Homo sapiens chromosome 5 clone CTD-2026A21, complete sequence Length = 145089 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 aaacagtcagactttgtttt 539 |||||||||||||||||||| Sbjct: 28003 aaacagtcagactttgtttt 27984
>gb|AC010347.4| Homo sapiens chromosome 5 clone CTD-2018C9, complete sequence Length = 146638 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 aaacagtcagactttgtttt 539 |||||||||||||||||||| Sbjct: 450 aaacagtcagactttgtttt 469
>gb|AC009014.5| Homo sapiens chromosome 5 clone P1_748D6, complete sequence Length = 88365 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 21681 actttgtttttgcatattgt 21662
>gb|AC091911.3| Homo sapiens chromosome 5 clone RP11-211K15, complete sequence Length = 167553 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 166870 actttgtttttgcatattgt 166851
>gb|AC091857.3| Homo sapiens chromosome 5 clone CTD-2315L13, complete sequence Length = 135299 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 72822 actttgtttttgcatattgt 72841
>dbj|AK019777.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930560N03 product:RIKEN cDNA 4930522H14 gene, full insert sequence Length = 818 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tgcttcttccttttctcttt 491 |||||||||||||||||||| Sbjct: 356 tgcttcttccttttctcttt 337
>dbj|AK005726.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700007J23 product:RIKEN cDNA 1700007J23 gene, full insert sequence Length = 849 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tgcttcttccttttctcttt 491 |||||||||||||||||||| Sbjct: 379 tgcttcttccttttctcttt 360
>dbj|AK015869.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930522H14 product:hypothetical protein, full insert sequence Length = 796 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tgcttcttccttttctcttt 491 |||||||||||||||||||| Sbjct: 297 tgcttcttccttttctcttt 278
>tpg|BK001394.1| TPA: TPA_exp: Homo sapiens MADH5 mRNA, partial 3'UTR Length = 5254 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 5198 actttgtttttgcatattgt 5217
>gb|AY994149.1| Latrodectus hesperus egg case silk protein-1 (ECP-1) mRNA, complete cds Length = 2957 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 cggcaagttctggaggaagaggat 323 ||||||||| |||||||||||||| Sbjct: 1393 cggcaagttttggaggaagaggat 1416
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 13739924 tcttccttttctctttagga 13739905
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 11657907 tcttccttttctctttagga 11657888
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 12943549 tcttccttttctctttagga 12943568
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 10732513 tcttccttttctctttagga 10732494
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 12201888 tcttccttttctctttagga 12201869
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 13384655 tcttccttttctctttagga 13384674 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 13214202 tcttccttttctctttagga 13214221
>gb|AC018735.12| Homo sapiens BAC clone RP11-372A6 from 2, complete sequence Length = 208924 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 cttcttccttttctctttag 493 |||||||||||||||||||| Sbjct: 159124 cttcttccttttctctttag 159143
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 29208 tcttccttttctctttagga 29227
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 118178 tcttccttttctctttagga 118159
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 125013 tcttccttttctctttagga 125032
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 86503 tcttccttttctctttagga 86522
>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077F02 Length = 172442 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 17846 tcttccttttctctttagga 17865
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 25349 tcttccttttctctttagga 25330
>emb|BX648328.1|HSM808476 Homo sapiens mRNA; cDNA DKFZp686H02163 (from clone DKFZp686H02163) Length = 6977 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 actttgtttttgcatattgt 549 |||||||||||||||||||| Sbjct: 6901 actttgtttttgcatattgt 6920
>gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547F10, complete sequence Length = 191549 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tgatatagccattgggttct 133 |||||||||||||||||||| Sbjct: 157611 tgatatagccattgggttct 157592
>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full insert sequence Length = 2164 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ctcctcttgcttcttccttttctc 488 |||||| ||||||||||||||||| Sbjct: 241 ctcctcctgcttcttccttttctc 218
>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ctcctcttgcttcttccttttctc 488 |||||| ||||||||||||||||| Sbjct: 240 ctcctcctgcttcttccttttctc 217
>emb|AL450341.10| Mouse DNA sequence from clone RP23-401L17 on chromosome 2, complete sequence Length = 214573 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 ttgcttcttccttttctctttagg 494 |||||||| ||||||||||||||| Sbjct: 69003 ttgcttctaccttttctctttagg 68980
>emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2506P8 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 199420 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tgatatagccattgggttct 133 |||||||||||||||||||| Sbjct: 42427 tgatatagccattgggttct 42446
>dbj|AP000911.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-713P17, complete sequence Length = 185957 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tgatcttgaaaccctggagg 159 |||||||||||||||||||| Sbjct: 56106 tgatcttgaaaccctggagg 56125
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttttctcagcagctttctc 467 |||||||||||||||||||| Sbjct: 807477 tttttctcagcagctttctc 807458
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tttttctcagcagctttctc 467 |||||||||||||||||||| Sbjct: 910110 tttttctcagcagctttctc 910091
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tcttccttttctctttagga 495 |||||||||||||||||||| Sbjct: 13821922 tcttccttttctctttagga 13821903
>gb|AC118730.5| Mus musculus chromosome 8, clone RP24-169O12, complete sequence Length = 164561 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 530 actttgtttttgcatattgtaccc 553 |||||||||||||||||| ||||| Sbjct: 29358 actttgtttttgcatattataccc 29335
>emb|AL627446.12| Mouse DNA sequence from clone RP23-211F22 on chromosome 4, complete sequence Length = 103091 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tgcttcttccttttctcttt 491 |||||||||||||||||||| Sbjct: 37994 tgcttcttccttttctcttt 38013 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,894,769 Number of Sequences: 3902068 Number of extensions: 5894769 Number of successful extensions: 127950 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127093 Number of HSP's gapped (non-prelim): 850 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)