| Clone Name | rbags15m04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009320.1| Triticum aestivum clone wlm24.pk0002.b11:fis, full insert mRNA sequence Length = 1331 Score = 716 bits (361), Expect = 0.0 Identities = 417/433 (96%), Gaps = 2/433 (0%) Strand = Plus / Minus Query: 185 acaaaattagctcacacgagttggaggatacaattatgcgattcggtacatcttttctgg 244 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1331 acaaaattagctcacacgagttgggggatacaattatgcgattcggtacatcttttctgg 1272 Query: 245 acaaggaacaaagaagaaggccgagaaacaaaacatgcatttgtgctt-aggcggttgcc 303 |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct: 1271 acaaggaaggaagaagaaggccgagaaacaaaacttgcatttgtgctttaggcgtttgcc 1212 Query: 304 gccattgatgatgatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctgg 363 ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1211 gccatggatgatgatctgtagcaagctcgctttgctgcacggacgatgtcctcaacctgt 1152 Query: 364 ggaactgccaatctttcaaggtttgccgcatagggcataggtacatcagctccggcaatc 423 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1151 ggaactgccaatctttcaaggtttgccgcatagggcatcggtacatcagctccggcaatc 1092 Query: 424 ctctcaactggtgcgtcaagatactcaaagctgtcctccacaacggacatgcatatttca 483 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1091 ctctcaactggtgcatcaagatactcaaagctgtcctccactacggacatgcatatttca 1032 Query: 484 gcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattggttttccta 543 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 1031 gcaccaacaccatgttgtggaaagccttcttcaacggtaaccaatctgttggttttccta 972 Query: 544 acggatgcattgatagcagctctatccaatggtctaattgacccgaaggttgatcacctc 603 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 971 acggatgcattgatagcagctctatccaatggtctaattga-ccgaaggttgatcacctc 913 Query: 604 agcactgattccc 616 ||||||||||||| Sbjct: 912 agcactgattccc 900
>ref|XM_483531.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 353 bits (178), Expect = 4e-94 Identities = 290/326 (88%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 1287 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 1228 Query: 351 gtcctcaacctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatc 410 |||||||||||| ||||| |||| || |||||||| || || |||||||| || ||||| Sbjct: 1227 gtcctcaacctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatc 1168 Query: 411 agctccggcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacgga 470 |||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||| || Sbjct: 1167 agctccagcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacaga 1108 Query: 471 catgcatatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatct 530 ||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 1107 catgcatatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatct 1048 Query: 531 attggttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaa 590 |||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1047 gttggttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaa 989 Query: 591 ggttgatcacctcagcactgattccc 616 | |||||||||||||||||||||||| Sbjct: 988 gattgatcacctcagcactgattccc 963 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 1457 ggatgcagccatccgactgc 1438
>ref|XM_507310.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0033D24.29 mRNA Length = 1658 Score = 353 bits (178), Expect = 4e-94 Identities = 290/326 (88%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 1291 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 1232 Query: 351 gtcctcaacctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatc 410 |||||||||||| ||||| |||| || |||||||| || || |||||||| || ||||| Sbjct: 1231 gtcctcaacctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatc 1172 Query: 411 agctccggcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacgga 470 |||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||| || Sbjct: 1171 agctccagcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacaga 1112 Query: 471 catgcatatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatct 530 ||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 1111 catgcatatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatct 1052 Query: 531 attggttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaa 590 |||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1051 gttggttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaa 993 Query: 591 ggttgatcacctcagcactgattccc 616 | |||||||||||||||||||||||| Sbjct: 992 gattgatcacctcagcactgattccc 967 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 1461 ggatgcagccatccgactgc 1442
>dbj|AK104686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C11, full insert sequence Length = 1587 Score = 353 bits (178), Expect = 4e-94 Identities = 290/326 (88%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 1287 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 1228 Query: 351 gtcctcaacctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatc 410 |||||||||||| ||||| |||| || |||||||| || || |||||||| || ||||| Sbjct: 1227 gtcctcaacctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatc 1168 Query: 411 agctccggcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacgga 470 |||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||| || Sbjct: 1167 agctccagcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacaga 1108 Query: 471 catgcatatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatct 530 ||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 1107 catgcatatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatct 1048 Query: 531 attggttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaa 590 |||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1047 gttggttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaa 989 Query: 591 ggttgatcacctcagcactgattccc 616 | |||||||||||||||||||||||| Sbjct: 988 gattgatcacctcagcactgattccc 963 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 1457 ggatgcagccatccgactgc 1438
>dbj|AK071782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B21, full insert sequence Length = 1658 Score = 353 bits (178), Expect = 4e-94 Identities = 290/326 (88%), Gaps = 1/326 (0%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 1291 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 1232 Query: 351 gtcctcaacctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatc 410 |||||||||||| ||||| |||| || |||||||| || || |||||||| || ||||| Sbjct: 1231 gtcctcaacctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatc 1172 Query: 411 agctccggcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacgga 470 |||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||| || Sbjct: 1171 agctccagcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacaga 1112 Query: 471 catgcatatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatct 530 ||||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| Sbjct: 1111 catgcatatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatct 1052 Query: 531 attggttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaa 590 |||||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| Sbjct: 1051 gttggttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaa 993 Query: 591 ggttgatcacctcagcactgattccc 616 | |||||||||||||||||||||||| Sbjct: 992 gattgatcacctcagcactgattccc 967 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 1461 ggatgcagccatccgactgc 1442
>gb|BT016804.1| Zea mays clone Contig637 mRNA sequence Length = 1826 Score = 266 bits (134), Expect = 8e-68 Identities = 255/294 (86%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct: 1425 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1366 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || || || ||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 1365 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1306 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| Sbjct: 1305 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 1246 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || ||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 1245 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 1186 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgat 612 | ||||||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 1185 gtagctctatccagcggtctaattga-gcgaagattgattacctcggcactgat 1133
>gb|AY107032.1| Zea mays PCO074087 mRNA sequence Length = 1752 Score = 266 bits (134), Expect = 8e-68 Identities = 255/294 (86%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct: 1402 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1343 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || || || ||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 1342 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1283 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| Sbjct: 1282 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 1223 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || ||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 1222 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 1163 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgat 612 | ||||||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 1162 gtagctctatccagcggtctaattga-gcgaagattgattacctcggcactgat 1110
>gb|AF069908.1|AF069908 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 1 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1511 Score = 266 bits (134), Expect = 8e-68 Identities = 255/294 (86%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 ||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| |||| || Sbjct: 1172 ctgtagcaagcacgcttggctgcccggacgatgtcatcgacctgtggaacagccatcctc 1113 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || || || ||||| || ||||||||||| ||||||||||| |||||||| Sbjct: 1112 tcaaggttggcagcgtacggcatgggcacatcagctccagcaatcctctcgactggtgca 1053 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| Sbjct: 1052 tcaagatactcaaagctgtcctctacaacagacatgcatatttccgcaccaatcccatgt 993 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || ||||||||||| |||||||||||||||||||||||||| || |||||||| ||| Sbjct: 992 tgagggaagccttcttctacggttaccaatctattggttttcctcacagatgcattaata 933 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgat 612 | ||||||||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct: 932 gtagctctatccagcggtctaattga-gcgaagattgattacctcggcactgat 880
>gb|AY109884.1| Zea mays CL1583_1 mRNA sequence Length = 1735 Score = 264 bits (133), Expect = 3e-67 Identities = 257/297 (86%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 |||||||| || ||||||||||| || |||||||| || ||||| ||||| |||| ||| Sbjct: 1353 ctgtagcaggcccgctttgctgcccgcacaatgtcatcgacctgtggaacagccattctc 1294 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || Sbjct: 1293 tcaaggttggcagcatagggcataggtacatcagctccagcgatcctctcaactggggca 1234 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||| ||||||||||| || || ||||| ||||||||||| || ||||||| |||||| Sbjct: 1233 tcaaggtactcaaagctttcttctacaacagacatgcatatctcggcaccaatcccatgt 1174 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || || ||||||||||| || ||||||| |||||||||||||| |||||||| ||| Sbjct: 1173 tgagggaacccttcttcaacagtcaccaatcggttggttttcctaacagatgcattaata 1114 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 ||||||||||| | |||||| || || ||||||||||||||||||||||||||||| Sbjct: 1113 gcagctctatcaagtggtctgatcga-tcgaaggttgatcacctcagcactgattcc 1058
>gb|AF069910.1|AF069910 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 3 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1655 Score = 264 bits (133), Expect = 3e-67 Identities = 257/297 (86%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 |||||||| || ||||||||||| || |||||||| || ||||| ||||| |||| ||| Sbjct: 1329 ctgtagcaggcccgctttgctgcccgcacaatgtcatcgacctgtggaacagccattctc 1270 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || Sbjct: 1269 tcaaggttggcagcatagggcataggtacatcagctccagcgatcctctcaactggggca 1210 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||| ||||||||||| || || ||||| ||||||||||| || ||||||| |||||| Sbjct: 1209 tcaaggtactcaaagctttcttctacaacagacatgcatatctcggcaccaatcccatgt 1150 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || || ||||||||||| || ||||||| |||||||||||||| |||||||| ||| Sbjct: 1149 tgagggaacccttcttcaacagtcaccaatcggttggttttcctaacagatgcattaata 1090 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 ||||||||||| | |||||| || || ||||||||||||||||||||||||||||| Sbjct: 1089 gcagctctatcaagtggtctgatcga-tcgaaggttgatcacctcagcactgattcc 1034
>dbj|AK061863.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H03, full insert sequence Length = 1598 Score = 258 bits (130), Expect = 2e-65 Identities = 257/298 (86%), Gaps = 1/298 (0%) Strand = Plus / Minus Query: 318 tctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatct 377 ||||||||| || ||||| ||||| |||||||| || |||||||| || || |||| || Sbjct: 1279 tctgtagcacgcacgcttcgctgcacggacaatatcgtcaacctgtgggacagccatcct 1220 Query: 378 ttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgc 437 ||||| || || ||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 1219 ctcaagattggcagcatagggcatgggtacatcagctccagcaattctctcaactggtgc 1160 Query: 438 gtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatg 497 |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 1159 atcaagatattcaaagctttcctcaacaacagacatgcatatctcagcaccaatcccatg 1100 Query: 498 ttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgat 557 ||||| |||| ||| |||| ||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 1099 ctgtgggaagctttcctcaatggtcaccaatctatttgtttttctaacagatgcattgat 1040 Query: 558 agcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 || ||||||||| | |||||||||||| |||||||| |||||||||||||||||||| Sbjct: 1039 agtagctctatcaagtggtctaattga-acgaaggtttatcacctcagcactgattcc 983
>dbj|AK069525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022P15, full insert sequence Length = 1608 Score = 258 bits (130), Expect = 2e-65 Identities = 257/298 (86%), Gaps = 1/298 (0%) Strand = Plus / Minus Query: 318 tctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatct 377 ||||||||| || ||||| ||||| |||||||| || |||||||| || || |||| || Sbjct: 1291 tctgtagcacgcacgcttcgctgcacggacaatatcgtcaacctgtgggacagccatcct 1232 Query: 378 ttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgc 437 ||||| || || ||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct: 1231 ctcaagattggcagcatagggcatgggtacatcagctccagcaattctctcaactggtgc 1172 Query: 438 gtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatg 497 |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||| ||||| Sbjct: 1171 atcaagatattcaaagctttcctcaacaacagacatgcatatctcagcaccaatcccatg 1112 Query: 498 ttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgat 557 ||||| |||| ||| |||| ||| ||||||||||| ||||| ||||| ||||||||||| Sbjct: 1111 ctgtgggaagctttcctcaatggtcaccaatctatttgtttttctaacagatgcattgat 1052 Query: 558 agcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 || ||||||||| | |||||||||||| |||||||| |||||||||||||||||||| Sbjct: 1051 agtagctctatcaagtggtctaattga-acgaaggtttatcacctcagcactgattcc 995
>gb|AF069909.1|AF069909 Zea mays pyruvate dehydrogenase E1 beta subunit isoform 2 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1679 Score = 256 bits (129), Expect = 8e-65 Identities = 256/297 (86%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 |||||||| || |||||||| || || |||||||| || ||||| ||||| |||| ||| Sbjct: 1354 ctgtagcaggcccgctttgccgcccgcacaatgtcatcgacctgcggaacagccattctc 1295 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1294 tcaaggttggcagcatagggcataggtacatcagctccagcaatcctctcaactggtgca 1235 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||| ||| | ||||| || || ||||| ||||||||||| || ||||||| |||||| Sbjct: 1234 tcaaggtacgcgaagctttcttctacaacagacatgcatatctcggcaccaatcccatgt 1175 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || || ||||||||||| || ||||||| ||||||||||| || |||||||| ||| Sbjct: 1174 tgggggaacccttcttcaacagtcaccaatcggttggttttcctgacagatgcattaata 1115 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 ||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 1114 gcagctctatcaagtggtctgattga-tcgaaggttgatcacctcagcactgattcc 1059 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gcagatctacaaaattagctc 197 ||||||||||||||||||||| Sbjct: 1511 gcagatctacaaaattagctc 1491
>gb|BT016454.1| Zea mays clone Contig287 mRNA sequence Length = 1335 Score = 240 bits (121), Expect = 4e-60 Identities = 254/297 (85%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 319 ctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaatctt 378 |||||||| || ||||||||||| || |||||||| || ||||| ||||| || | ||| Sbjct: 1091 ctgtagcaggcccgctttgctgcccgcacaatgtcatcgacctgtggaacagctattctc 1032 Query: 379 tcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggtgcg 438 |||||||| || |||||||||||||||||||||||||| || |||||||||||||| || Sbjct: 1031 tcaaggttggcagcatagggcataggtacatcagctccagcgatcctctcaactggggca 972 Query: 439 tcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacaccatgt 498 ||||| ||||||||||| || || ||||| ||||||||||| || ||||||| |||||| Sbjct: 971 tcaaggtactcaaagctttcttctacaacagacatgcatatctcggcaccaatcccatgt 912 Query: 499 tgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattgata 558 || || || ||||||||||| || ||||||| ||||||||||| || |||||||| ||| Sbjct: 911 tgagggaacccttcttcaacagtcaccaatcggttggttttcctgacagatgcattaata 852 Query: 559 gcagctctatccaatggtctaattgacccgaaggttgatcacctcagcactgattcc 615 ||||||||||| | |||||| || || ||||||||||||| ||||||||||||||| Sbjct: 851 gcagctctatcaagtggtctgatcga-tcgaaggttgatcatctcagcactgattcc 796
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 167 bits (84), Expect = 5e-38 Identities = 118/128 (92%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 475 catatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattg 534 ||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| ||| Sbjct: 26775191 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 26775132 Query: 535 gttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaaggtt 594 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| || Sbjct: 26775131 gttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaagatt 26775073 Query: 595 gatcacct 602 |||||||| Sbjct: 26775072 gatcacct 26775065 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Minus Query: 358 acctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatcagctccg 417 ||||| ||||| |||| || |||||||| || || |||||||| || ||||||||||| Sbjct: 26775394 acctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctcca 26775335 Query: 418 gcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacggacatgc 475 ||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||| Sbjct: 26775334 gcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 26775277 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 26775685 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 26775626 Query: 351 gtcctcaacctg 362 |||||||||||| Sbjct: 26775625 gtcctcaacctg 26775614 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 26775855 ggatgcagccatccgactgc 26775836
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 167 bits (84), Expect = 5e-38 Identities = 118/128 (92%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 475 catatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattg 534 ||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| ||| Sbjct: 118533 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 118474 Query: 535 gttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaaggtt 594 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| || Sbjct: 118473 gttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaagatt 118415 Query: 595 gatcacct 602 |||||||| Sbjct: 118414 gatcacct 118407 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Minus Query: 358 acctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatcagctccg 417 ||||| ||||| |||| || |||||||| || || |||||||| || ||||||||||| Sbjct: 118736 acctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctcca 118677 Query: 418 gcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacggacatgc 475 ||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||| Sbjct: 118676 gcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 118619 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 119027 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 118968 Query: 351 gtcctcaacctg 362 |||||||||||| Sbjct: 118967 gtcctcaacctg 118956 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 119197 ggatgcagccatccgactgc 119178
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 167 bits (84), Expect = 5e-38 Identities = 118/128 (92%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 475 catatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattg 534 ||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||| ||| Sbjct: 37981 catatttcagcgccaaccccatgttgtggaaatccttcttcaagggttaccaatctgttg 37922 Query: 535 gttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaaggtt 594 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| || Sbjct: 37921 gttttcctaactgatgcattgatagtagctctatccaatggcctaattga-ccgaagatt 37863 Query: 595 gatcacct 602 |||||||| Sbjct: 37862 gatcacct 37855 Score = 107 bits (54), Expect = 4e-20 Identities = 102/118 (86%) Strand = Plus / Minus Query: 358 acctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatcagctccg 417 ||||| ||||| |||| || |||||||| || || |||||||| || ||||||||||| Sbjct: 38184 acctgtggaacagccatcctctcaaggttggcagcgtagggcatgggcacatcagctcca 38125 Query: 418 gcaatcctctcaactggtgcgtcaagatactcaaagctgtcctccacaacggacatgc 475 ||||||||||||||||| || |||||||| |||||||||||||| ||||| ||||||| Sbjct: 38124 gcaatcctctcaactggcgcatcaagatattcaaagctgtcctctacaacagacatgc 38067 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 291 ttaggcggttgccgccattgatgatgatctgtagcaagctcgctttgctgcgcggacaat 350 |||||| ||||| ||||||| | || ||||||||| |||||||| ||||| || ||||| Sbjct: 38475 ttaggctgttgctgccattggtactgctctgtagcaggctcgcttcgctgcacgaacaat 38416 Query: 351 gtcctcaacctg 362 |||||||||||| Sbjct: 38415 gtcctcaacctg 38404 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggatgcagccatccgactgc 145 |||||||||||||||||||| Sbjct: 38645 ggatgcagccatccgactgc 38626
>ref|NM_124463.2| Arabidopsis thaliana pyruvate dehydrogenase (acetyl-transferring) AT5G50850 mRNA, complete cds Length = 1543 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 316 gatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaat 375 |||||||| ||||||| ||||| ||| || || |||||||| | ||| |||| |||||| Sbjct: 1231 gatctgtaacaagctctctttgatgcacgaacgatgtcctctatctgaggaagagccaat 1172 Query: 376 ctttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggt 435 || || ||||| || ||||| ||||| || ||||||||||| ||||||||||| || ||| Sbjct: 1171 ctctctaggttagctgcatacggcattggaacatcagctcctgcaatcctctcgaccggt 1112 Query: 436 gcgtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacacca 495 || || | ||| |||||| || || ||||| ||| || ||||| |||| || ||| Sbjct: 1111 gcatccaagtacgaaaagctctcttctacaaccgacgcacaaatttctgcacagactcca 1052 Query: 496 tgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattg 555 |||||||| || ||||||||||| |||||||||||| | |||||||| || || |||||| Sbjct: 1051 tgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagcattg 992 Query: 556 at 557 || Sbjct: 991 at 990
>gb|BT000839.1| Arabidopsis thaliana At5g50850/K16E14_1 mRNA, complete cds Length = 1092 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 316 gatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaat 375 |||||||| ||||||| ||||| ||| || || |||||||| | ||| |||| |||||| Sbjct: 1085 gatctgtaacaagctctctttgatgcacgaacgatgtcctctatctgaggaagagccaat 1026 Query: 376 ctttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggt 435 || || ||||| || ||||| ||||| || ||||||||||| ||||||||||| || ||| Sbjct: 1025 ctctctaggttagctgcatacggcattggaacatcagctcctgcaatcctctcgaccggt 966 Query: 436 gcgtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacacca 495 || || | ||| |||||| || || ||||| ||| || ||||| |||| || ||| Sbjct: 965 gcatccaagtacgaaaagctctcttctacaaccgacgcacaaatttctgcacagactcca 906 Query: 496 tgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattg 555 |||||||| || ||||||||||| |||||||||||| | |||||||| || || |||||| Sbjct: 905 tgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagcattg 846 Query: 556 at 557 || Sbjct: 845 at 844
>gb|AY070728.1| Arabidopsis thaliana AT5g50850/K16E14_1 mRNA, complete cds Length = 1401 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 316 gatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaat 375 |||||||| ||||||| ||||| ||| || || |||||||| | ||| |||| |||||| Sbjct: 1213 gatctgtaacaagctctctttgatgcacgaacgatgtcctctatctgaggaagagccaat 1154 Query: 376 ctttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggt 435 || || ||||| || ||||| ||||| || ||||||||||| ||||||||||| || ||| Sbjct: 1153 ctctctaggttagctgcatacggcattggaacatcagctcctgcaatcctctcgaccggt 1094 Query: 436 gcgtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacacca 495 || || | ||| |||||| || || ||||| ||| || ||||| |||| || ||| Sbjct: 1093 gcatccaagtacgaaaagctctcttctacaaccgacgcacaaatttctgcacagactcca 1034 Query: 496 tgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattg 555 |||||||| || ||||||||||| |||||||||||| | |||||||| || || |||||| Sbjct: 1033 tgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagcattg 974 Query: 556 at 557 || Sbjct: 973 at 972
>emb|BX830767.1|CNS0A1QX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZA07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1317 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 316 gatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaat 375 |||||||| ||||||| ||||| ||| || || |||||||| | ||| |||| |||||| Sbjct: 1196 gatctgtaacaagctctctttgatgcacgaacgatgtcctctatctgaggaagagccaat 1137 Query: 376 ctttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggt 435 || || ||||| || ||||| ||||| || ||||||||||| ||||||||||| || ||| Sbjct: 1136 ctctctaggttagctgcatacggcattggaacatcagctcctgcaatcctctcgaccggt 1077 Query: 436 gcgtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacacca 495 || || | ||| |||||| || || ||||| ||| || ||||| |||| || ||| Sbjct: 1076 gcatccaagtacgaaaagctctcttctacaaccgacgcacaaatttctgcacagactcca 1017 Query: 496 tgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattg 555 |||||||| || ||||||||||| |||||||||||| | |||||||| || || |||||| Sbjct: 1016 tgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagcattg 957 Query: 556 at 557 || Sbjct: 956 at 955
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 105 bits (53), Expect = 2e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 391 gcatagggcataggtacatcagctccggcaatcctctcaactggtgcgtcaagatactca 450 ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct: 57621 gcatagggcatgggtacatcagctccagcaattctctcaactggtgcatcaagatattca 57562 Query: 451 aagctgtcctccacaacggacatgc 475 ||||| ||||| ||||| ||||||| Sbjct: 57561 aagctttcctcaacaacagacatgc 57537 Score = 103 bits (52), Expect = 7e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 475 catatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattg 534 ||||| |||||||||| ||||| ||||| |||| ||| |||| ||| ||||||||||| Sbjct: 57458 catatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatctattt 57399 Query: 535 gttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaaggtt 594 ||||| ||||| ||||||||||||| ||||||||| | |||||||||||| |||||||| Sbjct: 57398 gtttttctaacagatgcattgatagtagctctatcaagtggtctaattga-acgaaggtt 57340 Query: 595 gatcacct 602 ||||||| Sbjct: 57339 tatcacct 57332 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 594 tgatcacctcagcactgattcc 615 |||||||||||||||||||||| Sbjct: 57230 tgatcacctcagcactgattcc 57209
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 105 bits (53), Expect = 2e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 391 gcatagggcataggtacatcagctccggcaatcctctcaactggtgcgtcaagatactca 450 ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| ||| Sbjct: 19462214 gcatagggcatgggtacatcagctccagcaattctctcaactggtgcatcaagatattca 19462155 Query: 451 aagctgtcctccacaacggacatgc 475 ||||| ||||| ||||| ||||||| Sbjct: 19462154 aagctttcctcaacaacagacatgc 19462130 Score = 103 bits (52), Expect = 7e-19 Identities = 110/128 (85%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 475 catatttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattg 534 ||||| |||||||||| ||||| ||||| |||| ||| |||| ||| ||||||||||| Sbjct: 19462051 catatctcagcaccaatcccatgctgtgggaagctttcctcaatggtcaccaatctattt 19461992 Query: 535 gttttcctaacggatgcattgatagcagctctatccaatggtctaattgacccgaaggtt 594 ||||| ||||| ||||||||||||| ||||||||| | |||||||||||| |||||||| Sbjct: 19461991 gtttttctaacagatgcattgatagtagctctatcaagtggtctaattga-acgaaggtt 19461933 Query: 595 gatcacct 602 ||||||| Sbjct: 19461932 tatcacct 19461925 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 594 tgatcacctcagcactgattcc 615 |||||||||||||||||||||| Sbjct: 19461823 tgatcacctcagcactgattcc 19461802
>gb|U09137.1|ATU09137 Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, complete cds Length = 1214 Score = 91.7 bits (46), Expect = 3e-15 Identities = 193/242 (79%) Strand = Plus / Minus Query: 316 gatctgtagcaagctcgctttgctgcgcggacaatgtcctcaacctggggaactgccaat 375 |||||||| ||||||| ||||| ||| || || |||||||| | ||| |||| |||||| Sbjct: 1154 gatctgtaacaagctctctttgatgcacgaacgatgtcctctatctgaggaagagccaat 1095 Query: 376 ctttcaaggtttgccgcatagggcataggtacatcagctccggcaatcctctcaactggt 435 || || ||||| || | ||| || || || ||||||||||| ||||||||||| || ||| Sbjct: 1094 ctctctaggttagctgtatacgggattggaacatcagctcctgcaatcctctcgaccggt 1035 Query: 436 gcgtcaagatactcaaagctgtcctccacaacggacatgcatatttcagcaccaacacca 495 || || | ||| |||||| || || ||||| ||| || ||||| |||| || ||| Sbjct: 1034 gcatccaagtacgaaaagctctcttctacaaccgacgcacaaatttctgcacagactcca 975 Query: 496 tgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgcattg 555 |||||||| || ||||||||||| |||||||||||| | |||||||| || || |||||| Sbjct: 974 tgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagcattg 915 Query: 556 at 557 || Sbjct: 914 at 913
>gb|U56697.1|PSU56697 Pisum sativum pyruvate dehydrogenase E1beta mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1522 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 478 atttcagcaccaacaccatgttgtggaaagccttcttcaacggttaccaatctattggtt 537 |||||||| |||||||| || || ||||| ||||||||||| || |||||||| |||||| Sbjct: 998 atttcagcgccaacaccgtgctgaggaaatccttcttcaactgtcaccaatctgttggtt 939 Query: 538 ttcctaacggatgcattgat 557 ||||| ||||| |||||||| Sbjct: 938 ttccttacggaagcattgat 919
>gb|BT013848.1| Lycopersicon esculentum clone 132808R, mRNA sequence Length = 1659 Score = 69.9 bits (35), Expect = 9e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 333 ctttgctgcgcggacaatgtcctcaacctggggaactgccaatctttcaaggtttgccgc 392 ||||||| | || ||||| || |||| ||| ||||| |||| |||||| || ||||| || Sbjct: 1212 ctttgctccacgaacaatatcttcaatctgtggaacagccattctttctagatttgctgc 1153 Query: 393 atagggcataggtacatcagctccggcaatcctctcaactggtgcgtcaagatactcaaa 452 ||| ||||| || || ||||| || | ||||||||||||||||| |||||||| ||||| Sbjct: 1152 atatggcatcggaacgtcagccccagatatcctctcaactggtgcatcaagatattcaaa 1093 Query: 453 gctgtcctccacaacggacatgcatatttcagcaccaacaccatgttgtggaaagccttc 512 || ||||| || || || || || ||||| ||||| || |||||||| || ||||| Sbjct: 1092 actttcctcaaccacagaagcacagatctcagctccaacgccgtgttgtgggaacccttc 1033 Query: 513 ttcaacggtta 523 |||||| |||| Sbjct: 1032 ttcaacagtta 1022
>dbj|AB026637.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16E14 Length = 8850 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 493 ccatgttgtggaaagccttcttcaacggttaccaatctattggttttcctaacggatgca 552 ||||||||||| || ||||||||||| |||||||||||| | |||||||| || || ||| Sbjct: 3951 ccatgttgtgggaaaccttcttcaactgttaccaatctactcgttttcctcactgaagca 3892 Query: 553 ttgat 557 ||||| Sbjct: 3891 ttgat 3887 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 357 aacctggggaactgccaatctttcaaggtttgccgcatagggcataggtacatcagctcc 416 |||||| |||| |||||||| || ||||| || ||||| ||||| || ||||||||||| Sbjct: 4184 aacctgaggaagagccaatctctctaggttagctgcatacggcattggaacatcagctcc 4125 Query: 417 ggcaatcctctcaactggtgc 437 ||||||||||| || ||||| Sbjct: 4124 tgcaatcctctcgaccggtgc 4104
>ref|XM_780098.1| PREDICTED: Strongylocentrotus purpuratus similar to pyruvate dehydrogenase (lipoamide) beta (LOC580017), mRNA Length = 1197 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 391 gcatagggcataggtacatcagctccgg 418 ||||||||||| |||||||||||||||| Sbjct: 1004 gcatagggcatgggtacatcagctccgg 977
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 gcatatttcagcaccaacacca 495 |||||||||||||||||||||| Sbjct: 61692 gcatatttcagcaccaacacca 61713
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 gcatatttcagcaccaacacca 495 |||||||||||||||||||||| Sbjct: 1843862 gcatatttcagcaccaacacca 1843883
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 gcatatttcagcaccaacacca 495 |||||||||||||||||||||| Sbjct: 1841583 gcatatttcagcaccaacacca 1841604
>emb|CR759824.9| Zebrafish DNA sequence from clone DKEY-81E3 in linkage group 13, complete sequence Length = 174086 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tccctcaaatgtaaacctcca 84 ||||||||||||||||||||| Sbjct: 159290 tccctcaaatgtaaacctcca 159310
>emb|AL138823.14| Human DNA sequence from clone RP11-64J21 on chromosome 13 Contains part of a novel gene similar to tumour-associated hydroquinone (NADH) oxidase TNOX, a ribosomal protein L36 (RPL36) pseudogene and a CpG island, complete sequence Length = 175112 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cttttctggacaaggaacaaa 256 ||||||||||||||||||||| Sbjct: 26274 cttttctggacaaggaacaaa 26294
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 370 gccaatctttcaaggtttgccgcatagggcataggtacatc 410 |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct: 600009 gccaatttttcaagatttgccgcataaggcatgggaacatc 599969
>gb|AC108128.2| Homo sapiens chromosome 5 clone RP11-755E13, complete sequence Length = 119387 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 aatcaacaatgcagcatgcag 180 ||||||||||||||||||||| Sbjct: 99535 aatcaacaatgcagcatgcag 99515
>gb|AC093221.3| Homo sapiens chromosome 5 clone CTD-2181C22, complete sequence Length = 139833 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 aatcaacaatgcagcatgcag 180 ||||||||||||||||||||| Sbjct: 3189 aatcaacaatgcagcatgcag 3169
>gb|AC025227.6|AC025227 Homo sapiens BAC clone RP11-109G18 from Y, complete sequence Length = 60810 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggacaaggaacaaagaagaag 263 ||||||||||||||||||||| Sbjct: 18433 ggacaaggaacaaagaagaag 18453
>emb|BX248401.10| Zebrafish DNA sequence from clone CH211-233P10, complete sequence Length = 144874 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tccctcaaatgtaaacctcca 84 ||||||||||||||||||||| Sbjct: 104634 tccctcaaatgtaaacctcca 104654
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggacaaggaacaaagaagaag 263 ||||||||||||||||||||| Sbjct: 409224 ggacaaggaacaaagaagaag 409244
>gb|AC004111.1| Homo sapiens BAC clone CTB-103H13 from 7, complete sequence Length = 106172 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gttgcatgattcaaatgtct 107 |||||||||||||||||||| Sbjct: 61712 gttgcatgattcaaatgtct 61731
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tgccgccattgatgatgatc 319 |||||||||||||||||||| Sbjct: 127873 tgccgccattgatgatgatc 127854
>emb|AL359180.17| Human DNA sequence from clone RP11-320G21 on chromosome 13, complete sequence Length = 159229 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 249 ggaacaaagaagaaggccgagaaacaaa 276 |||||| | ||||||||||||||||||| Sbjct: 47328 ggaacagaaaagaaggccgagaaacaaa 47355
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 gcaagctcgctttgctgcgc 343 |||||||||||||||||||| Sbjct: 172166 gcaagctcgctttgctgcgc 172147 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcaagctcgctttgctgcgc 343 |||||||||||||||||||| Sbjct: 99577 gcaagctcgctttgctgcgc 99596
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcaagctcgctttgctgcgc 343 |||||||||||||||||||| Sbjct: 3177364 gcaagctcgctttgctgcgc 3177383
>emb|AL627222.10| Mouse DNA sequence from clone RP23-265A5 on chromosome 11 Contains a novel gene, the Tac4 gene for tachykinin, the Myst2 gene for MYST histone acetyltransferase 2, two novel genes, the 5' end of the gene for the likely ortholog of H. sapiens C/EBP-induced protein (5730593F17Rik) and a CpG island, complete sequence Length = 185645 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tggggaactgccaatctttc 380 |||||||||||||||||||| Sbjct: 9381 tggggaactgccaatctttc 9362
>emb|CR352263.9| Zebrafish DNA sequence from clone CH211-120M16 in linkage group 3, complete sequence Length = 165166 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 ctggacaaggaacaaagaagaagg 264 ||||| |||||||||||||||||| Sbjct: 33287 ctggagaaggaacaaagaagaagg 33264
>ref|XM_687995.1| PREDICTED: Danio rerio similar to lemur tyrosine kinase 2 (LOC564666), mRNA Length = 4548 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 ctggacaaggaacaaagaagaagg 264 ||||| |||||||||||||||||| Sbjct: 3770 ctggagaaggaacaaagaagaagg 3793
>emb|BX004760.10| Zebrafish DNA sequence from clone CH211-222O4 in linkage group 3, complete sequence Length = 190220 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 ctggacaaggaacaaagaagaagg 264 ||||| |||||||||||||||||| Sbjct: 54266 ctggagaaggaacaaagaagaagg 54243
>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence Length = 140256 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 aaacaaaacatgcatttgtg 289 |||||||||||||||||||| Sbjct: 71848 aaacaaaacatgcatttgtg 71829
>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence Length = 233915 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aaacaaaacatgcatttgtg 289 |||||||||||||||||||| Sbjct: 220648 aaacaaaacatgcatttgtg 220667
>emb|AL935132.13| Mouse DNA sequence from clone RP23-8G23 on chromosome 2, complete sequence Length = 165444 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tacatacatgttattgagacatcc 66 ||||||||||||| |||||||||| Sbjct: 42104 tacatacatgttactgagacatcc 42081
>emb|Z46387.1|ATPVTD A.terreus gene for putative pyruvate dehydrogenase Length = 400 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 cgaaggttgatcacctcagc 606 |||||||||||||||||||| Sbjct: 264 cgaaggttgatcacctcagc 245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,294,693 Number of Sequences: 3902068 Number of extensions: 5294693 Number of successful extensions: 87105 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86778 Number of HSP's gapped (non-prelim): 315 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)