ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16b01 |
|---|---|
| Clone Library Name | barley_pub |
>METK_HORVU (P50299) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 394 Score = 47.8 bits (112), Expect = 6e-06 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDDADFTWEVVKPLKFDKASA Sbjct: 374 RDDADFTWEVVKPLKFDKASA 394
>METL_ORYSA (P93438) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 394 Score = 40.4 bits (93), Expect = 0.001 Identities = 16/21 (76%), Positives = 20/21 (95%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 R+D DFTWEVVKPLK++KAS+ Sbjct: 374 REDPDFTWEVVKPLKYEKASS 394
>METK_ORYSA (P46611) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 396 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 19/21 (90%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPLK++K SA Sbjct: 376 RDDPDFTWEVVKPLKWEKPSA 396
>METL_LYCES (P43281) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPLK+DK A Sbjct: 373 RDDPDFTWEVVKPLKWDKPEA 393
>METL_ARATH (P17562) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPLK+DK A Sbjct: 373 RDDPDFTWEVVKPLKWDKPQA 393
>METK_BRAJU (P49611) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPLK+DK A Sbjct: 373 RDDPDFTWEVVKPLKWDKPQA 393
>METK_ARATH (P23686) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPLK+DK A Sbjct: 373 RDDPDFTWEVVKPLKWDKPQA 393
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDK 348 RDDADFTWEVVKPLK++K Sbjct: 372 RDDADFTWEVVKPLKWEK 389
>METL_CATRO (Q96552) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 R+D DFTWEVVKPLKF+K A Sbjct: 373 REDPDFTWEVVKPLKFEKVEA 393
>METK_CATRO (Q96551) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKAS 342 RDD DFTWEVVKPLK++KA+ Sbjct: 373 RDDPDFTWEVVKPLKWEKAA 392
>METM_ACTCH (P50303) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) (Fragment) Length = 360 Score = 39.7 bits (91), Expect = 0.002 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDK 348 RDDADFTWEVVKPLK++K Sbjct: 340 RDDADFTWEVVKPLKWEK 357
>METK_PINBN (P50300) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/21 (76%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWE VKPLK++KA A Sbjct: 373 RDDPDFTWETVKPLKWEKAQA 393
>METK_PETCR (P31155) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) (Fragment) Length = 234 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKA 345 R+D DFTWEVVKPLK++KA Sbjct: 216 REDPDFTWEVVKPLKWEKA 234
>METL_PETCR (P31156) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) (Fragment) Length = 145 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKA 345 R+D DFTWEVVKPLK++KA Sbjct: 127 REDPDFTWEVVKPLKWEKA 145
>METK_LYCES (P43280) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDK 348 RDD DFTWEVVKPLK++K Sbjct: 373 RDDPDFTWEVVKPLKWEK 390
>METK_PEA (P49612) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) (Fragment) Length = 366 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKA 345 R+D DFTWEVVKPLK++KA Sbjct: 348 REDPDFTWEVVKPLKWEKA 366
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFD 351 RDD DFTWEVVKPLK+D Sbjct: 374 RDDPDFTWEVVKPLKWD 390
>METK_MUSAC (O22338) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 393 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 RDD DFTWEVVKPL+ +K +A Sbjct: 373 RDDPDFTWEVVKPLELEKPAA 393
>METL_DIACA (P24260) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 396 Score = 31.2 bits (69), Expect = 0.62 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 401 RDDADFTWEVVKPLKFDKASA 339 R+D DFTWE K LK++K A Sbjct: 376 REDPDFTWEAAKTLKWEKPQA 396
>METM_LYCES (P43282) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) Length = 390 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -1 Query: 401 RDDADFTWEVVKPLK 357 RDD DFTWE VK LK Sbjct: 373 RDDPDFTWETVKVLK 387
>METM_CATRO (Q96553) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) Length = 390 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -1 Query: 401 RDDADFTWEVVKPLK 357 RDD DFTWE VK LK Sbjct: 373 RDDPDFTWETVKILK 387
>METK_ACTCH (P50301) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 390 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -1 Query: 401 RDDADFTWEVVKPLK 357 RDD DFTWE VK LK Sbjct: 373 RDDPDFTWETVKILK 387
>Y086_METJA (Q57551) Hypothetical protein MJ0086| Length = 372 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 211 KTSVARRSDVECCSYFPGAKEPRLAE 288 K + + D+ CSY PG K P++AE Sbjct: 231 KDDIGKGYDIIFCSYNPGGKNPKIAE 256
>METL_ACTCH (P50302) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 390 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = -1 Query: 401 RDDADFTWEVVKPLK 357 RDDAD TWE VK LK Sbjct: 373 RDDADLTWETVKILK 387
>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)| Length = 1043 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Frame = -2 Query: 364 PSSSTRH--LPKNKTSHSGFSWSDASQVRQXXXXXXXGSKNSIRHRCDVL 221 PSS T H LPK ++ G + S AS+ R K S+ HR L Sbjct: 551 PSSGTFHVKLPKKRSVELGITISSASRKRGEPLIISDIKKGSVAHRTGTL 600
>CCR8_HUMAN (P51685) C-C chemokine receptor type 8 (C-C CKR-8) (CC-CKR-8)| (CCR-8) (GPR-CY6) (GPRCY6) (Chemokine receptor-like 1) (CKR-L1) (TER1) (CMKBRL2) (CC-chemokine receptor CHEMR1) (CDw198 antigen) Length = 355 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%) Frame = -2 Query: 109 CSVSRSVTFAYHIL-------CCVVPLIMLFLP*XSQKIKK 8 CS+S+ +T+A H+ CCV P+I F+ +K KK Sbjct: 272 CSISQQLTYATHVTEIISFTHCCVNPVIYAFV---GEKFKK 309
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +2 Query: 71 NMISESDRATNRANCTSLSSFRDTKRKRENISNDTPVRKLSTDHQ 205 N S SD +T+R++ S R TK+K++ T V TDHQ Sbjct: 327 NSYSVSDGSTSRSS-RSRKKLRTTKKKKKGEEEVTAVDGYETDHQ 370
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +2 Query: 41 EHYEGNYTT-KNMISESDRATNRANCTSLSSFRDTKRKRENISNDTPVRKLSTDHQTAR 214 E EG Y + K + ESD NR+ S S RD KR+R S D R+ S + R Sbjct: 134 EKMEGRYESEKRLQKESDSKRNRSRSRSRS--RDRKRRRSR-SGDRDRRRRSRSREDRR 189
>METK_PETHY (P48498) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 390 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = -1 Query: 401 RDDADFTWEVVKPL 360 RDD DFTWE VK L Sbjct: 373 RDDPDFTWETVKVL 386
>DLT_DROME (Q8T626) Protein disks lost (Protein vanaso) (Codanin 1 homolog)| Length = 1240 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Frame = +2 Query: 8 LFYFLRXLRKKEHYEGNYTTKNMISESDRATNRANCTSLSSF---------RDTKRKREN 160 L L L K H++ + + N++NCT L F + TKR + Sbjct: 20 LLQLLAQLEKVPHHQLEQKFVAYFKKVGKGDNQSNCT-LEDFATYFLGALRQSTKRYYYS 78 Query: 161 ISNDTPVRKLSTDHQTARPV 220 +++TPV L+ HQ PV Sbjct: 79 QNSETPVFPLTPIHQLKPPV 98
>GRIP2_RAT (Q9WTW1) Glutamate receptor-interacting protein 2 (GRIP2 protein)| (AMPA receptor-interacting protein GRIP2) Length = 1043 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Frame = -2 Query: 364 PSSSTRH--LPKNKTSHSGFSWSDASQVRQXXXXXXXGSKNSIRHRCDVL 221 PSS T H LPK + G + S AS+ R K S+ HR L Sbjct: 553 PSSGTFHVKLPKRRGVELGITISSASRKRGEPLIISDIKKGSVAHRTGTL 602
>FAB1_YEAST (P34756) 1-phosphatidylinositol-3-phosphate 5-kinase FAB1 (EC| 2.7.1.150) (Phosphatidylinositol-3-phosphate 5-kinase) (Type III PIP kinase) Length = 2278 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 65 TKNMISESDRATNRANCTSLSSFRDTKRKRENISNDTPVRKLS-TDHQTARPV*HVAAMS 241 +KN DR N ++++F+D DTP+ S T H T P A+ Sbjct: 1543 SKNTTENRDRTNEPQNAVTITTFKD----------DTPIIPTSGTSHLTVTP---SASSV 1589 Query: 242 NAVLTSQEQKNPAL 283 ++ LT Q ++ P + Sbjct: 1590 SSSLTPQTEERPPI 1603
>GST2_YEAST (Q12390) Glutathione S-transferase II (EC 2.5.1.18) (GST-II)| Length = 233 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +2 Query: 32 RKKEHYEGNYTTKNMISESDRATNRANCTSLSSFRDTKRKRENISNDTPVRK 187 +K E NY+ + E D T A CT+++ + D ++ TP+ K Sbjct: 59 KKPEFLAKNYSGTVPVLELDDGTLIAECTAITEYIDALDGTPTLTGKTPLEK 110
>T2EA_SCHPO (Q9P3W1) Transcription initiation factor IIE alpha subunit| (TFIIE-alpha) Length = 448 Score = 27.3 bits (59), Expect = 8.9 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Frame = +2 Query: 5 ALFYFLRXLRKKEHYEGNYTTKNMIS--ESDRATNRANCTSLSS----FRDTKRKRENIS 166 AL + LR K+ E + + E D + TSL + + KRK EN++ Sbjct: 326 ALDAYYATLRAKQKEESEFMDSENVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLN 385 Query: 167 NDTPVRKLST----DHQTARPV*HVAAMSNAVLTSQEQKNPALPN 289 +D+ ++ T ++ + P+ +++ QE K + N Sbjct: 386 SDSDIQNKRTKSIEENNSLPPIVSTNGITDGDTEMQESKKNVIIN 430
>IORA_ARCFU (O28783) Indolepyruvate oxidoreductase subunit iorA (EC 1.2.7.8)| (IOR) (Indolepyruvate ferredoxin oxidoreductase alpha subunit) Length = 623 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/61 (34%), Positives = 28/61 (45%) Frame = +2 Query: 20 LRXLRKKEHYEGNYTTKNMISESDRATNRANCTSLSSFRDTKRKRENISNDTPVRKLSTD 199 L L K E Y N + N + E D C S+ TK EN++ + PV KLS+ Sbjct: 224 LEKLEKIERYF-NSSEMNWVDEGDGDVGIIACGL--SYAYTKEALENLNLNLPVLKLSSM 280 Query: 200 H 202 H Sbjct: 281 H 281
>TAL_BURS3 (Q39E45) Transaldolase (EC 2.2.1.2)| Length = 317 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +2 Query: 86 SDRATNRANCTSLSSFRDTKRKRENISNDTPVRKLSTDHQTARPV*HVA 232 + + T A C L+ D +K ++ SNDT RKLS D +P VA Sbjct: 228 TSQITELAGCDLLTISPDLLQKLQD-SNDTVTRKLSPDALQDKPAARVA 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,018,219 Number of Sequences: 219361 Number of extensions: 896551 Number of successful extensions: 2364 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2364 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
