ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15l22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1138 bits (574), Expect = 0.0 Identities = 604/615 (98%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| Sbjct: 49899 ggctccttttcgccatgcataaactaaaccaacaactaagataagcacgaaaatcaaagc 49958 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49959 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 50018 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50019 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 50078 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 50079 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcc 50138 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 50139 ttcactaaccggggctaaaagtcctgaaatcgaaaatgccaaaataggaataaggcttgc 50198 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactccca 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 50199 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactccca 50258 Query: 360 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50259 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 50318 Query: 420 agaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctta 479 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 50319 agaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctta 50378 Query: 480 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50379 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 50438 Query: 540 actccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctta 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50439 actccctttcttttggatttccattctatttagatatggtgtatgtagatctaattctta 50498 Query: 600 tataaagaaaacttt 614 ||||||||||||||| Sbjct: 50499 tataaagaaaacttt 50513
>gb|J04954.1|WHTCPPSBG Triticum aestivum chloroplast NADPH-plastoquinone oxireductase (psbG) and thylakoid membrane protein (ndhC) genes, complete cds Length = 1492 Score = 1092 bits (551), Expect = 0.0 Identities = 581/592 (98%), Gaps = 1/592 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||||| Sbjct: 592 ggctccttttcgccatgcataaactaaaccaacaactaagataagcacgaaaatcaaagc 533 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 532 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 473 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 413 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 412 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcc 353 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 352 ttcactaaccggggctaaaagtcctgaaatcgaaaatgccaaaataggaataaggcttgc 293 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactccca 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 292 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactccca 233 Query: 360 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 232 ttaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatcc 173 Query: 420 agaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctta 479 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 172 agaacttctctcttttcctcggtgaaacaagaatcttttttgttcaaacaaaagcgctta 113 Query: 480 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 gtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccca 53 Query: 540 actccctttcttttggatttccattctatttagatatggtgtatgtagatct 591 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52 actccctttcttttggatttccattctatttagatatggtgtatgtagatct 1
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 771 bits (389), Expect = 0.0 Identities = 535/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 49256 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 49315 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 49316 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 49375 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 49376 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 49435 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 49436 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 49495 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 49496 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49555 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 49556 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 49615 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 49616 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 49674 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 49675 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 49734 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 49735 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 49794 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 49795 gactccctttctttttgatttcctttctatttaggtatggtg 49836
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 49308 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 49367 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 49368 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 49427 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 49428 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 49487 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 49488 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 49547 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 49548 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49607 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 49608 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 49667 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 49668 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 49726 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 49727 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 49786 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 49787 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 49846 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 49847 gaccccctttctttttgatttcctttctatttaggtatggtg 49888
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 49308 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 49367 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 49368 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 49427 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 49428 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 49487 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 49488 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 49547 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 49548 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49607 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 49608 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 49667 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 49668 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 49726 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 49727 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 49786 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 49787 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 49846 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 49847 gaccccctttctttttgatttcctttctatttaggtatggtg 49888
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 763 bits (385), Expect = 0.0 Identities = 535/582 (91%), Gaps = 4/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 47511 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 47570 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 47571 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 47630 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 47631 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 47690 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 47691 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 47749 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 47750 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 47809 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 47810 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 47869 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 47870 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 47928 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 47929 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 47988 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 47989 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 48048 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 48049 gactccctttctttttgatttcctttctatttaggtatggtg 48090
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 763 bits (385), Expect = 0.0 Identities = 535/582 (91%), Gaps = 4/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 122444 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 122503 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 122504 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 122563 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 122564 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 122623 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 122624 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 122682 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 122683 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 122742 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 122743 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 122802 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 122803 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 122861 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 122862 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 122921 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 122922 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 122981 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 122982 gactccctttctttttgatttcctttctatttaggtatggtg 123023
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 11285470 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 11285529 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 11285530 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 11285589 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 11285590 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 11285649 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 11285650 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 11285709 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 11285710 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 11285769 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 11285770 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 11285829 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 11285830 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 11285888 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 11285889 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 11285948 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 11285949 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 11286008 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| |||||| |||||||||| ||||||| Sbjct: 11286009 gactccctttcttttttatttcctttctatttaggtatggtg 11286050 Score = 733 bits (370), Expect = 0.0 Identities = 533/583 (91%), Gaps = 5/583 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 5608346 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 5608405 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5608406 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 5608465 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5608466 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 5608525 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 5608526 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 5608584 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttg 298 ||||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct: 5608585 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttg 5608644 Query: 299 ctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcc 357 ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 5608645 ctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcc 5608704 Query: 358 cattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttat 417 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | Sbjct: 5608705 cattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattttt 5608763 Query: 418 ccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgct 477 ||||| |||||| ||||||| || |||||||| ||| |||| |||||| |||| ||| Sbjct: 5608764 acagaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggct 5608823 Query: 478 tagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcc 537 |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 5608824 tagtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcc 5608883 Query: 538 caactccctttcttttggatttccattctatttagatatggtg 580 | |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 5608884 cgactccctttctttttgatttcctttctatttaggtatggtg 5608926 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 436 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 7761368 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 7761316
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 19945294 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 19945235 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 19945234 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 19945175 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 19945174 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 19945115 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 19945114 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 19945055 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 19945054 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 19944995 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 19944994 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 19944935 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 19944934 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 19944876 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 19944875 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 19944816 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 19944815 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 19944756 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 19944755 gaccccctttctttttgatttcctttctatttaggtatggtg 19944714 Score = 763 bits (385), Expect = 0.0 Identities = 535/582 (91%), Gaps = 4/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 10341119 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 10341178 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 10341179 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 10341238 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 10341239 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 10341298 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 10341299 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 10341357 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 10341358 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 10341417 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 10341418 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 10341477 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 10341478 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 10341536 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 10341537 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 10341596 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 10341597 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 10341656 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 10341657 gactccctttctttttgatttcctttctatttaggtatggtg 10341698
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 40749 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 40808 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 40809 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 40868 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 40869 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 40928 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 40929 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 40988 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 40989 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 41048 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 41049 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 41108 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 41109 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 41167 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 41168 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 41227 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 41228 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 41287 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 41288 gaccccctttctttttgatttcctttctatttaggtatggtg 41329
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 19956570 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 19956511 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 19956510 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 19956451 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 19956450 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 19956391 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 19956390 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 19956331 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 19956330 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 19956271 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 19956270 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 19956211 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 19956210 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 19956152 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 19956151 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 19956092 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 19956091 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 19956032 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 19956031 gaccccctttctttttgatttcctttctatttaggtatggtg 19955990 Score = 763 bits (385), Expect = 0.0 Identities = 535/582 (91%), Gaps = 4/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 10347158 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 10347217 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 10347218 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 10347277 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 10347278 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 10347337 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 10347338 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 10347396 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 10347397 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 10347456 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 10347457 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 10347516 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 10347517 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 10347575 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 10347576 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 10347635 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 10347636 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 10347695 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 10347696 gactccctttctttttgatttcctttctatttaggtatggtg 10347737
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 11285141 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 11285200 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 11285201 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 11285260 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 11285261 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 11285320 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 11285321 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 11285380 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 11285381 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 11285440 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 11285441 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 11285500 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 11285501 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 11285559 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 11285560 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 11285619 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 11285620 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 11285679 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| |||||| |||||||||| ||||||| Sbjct: 11285680 gactccctttcttttttatttcctttctatttaggtatggtg 11285721 Score = 733 bits (370), Expect = 0.0 Identities = 533/583 (91%), Gaps = 5/583 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 5608335 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 5608394 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 5608395 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 5608454 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5608455 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 5608514 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 5608515 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 5608573 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttg 298 ||||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct: 5608574 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttg 5608633 Query: 299 ctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcc 357 ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 5608634 ctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcc 5608693 Query: 358 cattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttat 417 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | Sbjct: 5608694 cattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattttt 5608752 Query: 418 ccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgct 477 ||||| |||||| ||||||| || |||||||| ||| |||| |||||| |||| ||| Sbjct: 5608753 acagaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggct 5608812 Query: 478 tagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcc 537 |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 5608813 tagtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcc 5608872 Query: 538 caactccctttcttttggatttccattctatttagatatggtg 580 | |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 5608873 cgactccctttctttttgatttcctttctatttaggtatggtg 5608915 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 436 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 7761249 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 7761197
>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127267 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 86584 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 86525 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 86524 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 86465 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 86464 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 86405 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 86404 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 86345 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 86344 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 86285 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 86284 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 86225 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 86224 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 86166 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 86165 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 86106 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 86105 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 86046 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| |||||| |||||||||| ||||||| Sbjct: 86045 gactccctttcttttttatttcctttctatttaggtatggtg 86004
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 763 bits (385), Expect = 0.0 Identities = 534/582 (91%), Gaps = 3/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 49235 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 49294 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 49295 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 49354 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 49355 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 49414 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 49415 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 49474 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 49475 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49534 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 49535 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 49594 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 49595 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 49653 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 49654 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 49713 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 49714 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 49773 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||| | |||||||||| ||||||| Sbjct: 49774 gactccctttctttttgatttactttctatttaggtatggtg 49815
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 755 bits (381), Expect = 0.0 Identities = 534/582 (91%), Gaps = 4/582 (0%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 49315 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 49374 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 49375 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 49434 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 49435 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 49494 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 49495 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 49554 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 49555 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49614 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 49615 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 49674 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 49675 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 49733 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 49734 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaag-gctt 49792 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 49793 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatccc 49852 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 || ||||||||||| ||||||| |||||||||| ||||||| Sbjct: 49853 gaccccctttctttttgatttcctttctatttaggtatggtg 49894
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 733 bits (370), Expect = 0.0 Identities = 533/583 (91%), Gaps = 5/583 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 44539 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 44480 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 44479 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 44420 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 44419 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 44360 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 44359 taaccaagcccc-cccatgggttctatacccgattcataactagaaagcttctctggtcc 44301 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgc-caaaataggaataaggcttg 298 ||||| |||||| |||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct: 44300 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaataggaataaggcttg 44241 Query: 299 ctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcc 357 ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 44240 ctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcc 44181 Query: 358 cattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttat 417 ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| | Sbjct: 44180 cattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattttt 44122 Query: 418 ccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgct 477 ||||| |||||| ||||||| || |||||||| ||| |||| |||||| |||| ||| Sbjct: 44121 acagaatttctcttttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggct 44062 Query: 478 tagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatcc 537 |||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 44061 tagtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcc 44002 Query: 538 caactccctttcttttggatttccattctatttagatatggtg 580 | |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 44001 cgactccctttctttttgatttcctttctatttaggtatggtg 43959
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 728 bits (367), Expect = 0.0 Identities = 559/622 (89%), Gaps = 15/622 (2%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 51870 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 51929 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 51930 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagac 51989 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 51990 tgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 52049 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 52050 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 52109 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct: 52110 ttcactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgc 52169 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 52170 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 52229 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| Sbjct: 52230 attaatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatc 52288 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaa------- 471 |||||||||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 52289 cagaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaag 52348 Query: 472 -agcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaat 530 |||||||| |||||||||| |||| | |||| | ||||| |||| |||||||||||| Sbjct: 52349 gagcgcttactttagcctttatttcttttgtgatatgtcttccttaaggattcatccaat 52408 Query: 531 ggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatc 590 | |||||| ||| || ||||||| ||||||| ||||||||||||||| || |||| | Sbjct: 52409 gtaatccccacttcccttctttttgatttcccttctatttagatatg----atatagacc 52464 Query: 591 taattcttatataaagaaaact 612 ||||||||||| |||||||||| Sbjct: 52465 taattcttatacaaagaaaact 52486
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 728 bits (367), Expect = 0.0 Identities = 559/622 (89%), Gaps = 15/622 (2%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 114024 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 114083 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 114084 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagac 114143 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 114144 tgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 114203 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 114204 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 114263 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct: 114264 ttcactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgc 114323 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 114324 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 114383 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| Sbjct: 114384 attaatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatc 114442 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaa------- 471 |||||||||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 114443 cagaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaag 114502 Query: 472 -agcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaat 530 |||||||| ||||||||||||||| | |||| | ||||| |||| |||||||||||| Sbjct: 114503 gagcgcttactttagcctttgtttcttttgtgatatgtcttccttaaggattcatccaat 114562 Query: 531 ggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatc 590 | |||||| ||| | ||||||| ||||||| ||||||||||||||| || |||| | Sbjct: 114563 gtaatccccacttgccttctttttgatttcccttctatttagatatg----atatagacc 114618 Query: 591 taattcttatataaagaaaact 612 ||||||||||| |||||||||| Sbjct: 114619 taattcttatacaaagaaaact 114640
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 728 bits (367), Expect = 0.0 Identities = 559/622 (89%), Gaps = 15/622 (2%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 51859 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 51918 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 51919 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagac 51978 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 51979 tgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 52038 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 52039 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 52098 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct: 52099 ttcactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgc 52158 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 52159 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 52218 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| Sbjct: 52219 attaatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatc 52277 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaa------- 471 |||||||||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 52278 cagaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaag 52337 Query: 472 -agcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaat 530 |||||||| |||||||||| |||| | |||| | ||||| |||| |||||||||||| Sbjct: 52338 gagcgcttactttagcctttatttcttttgtgatatgtcttccttaaggattcatccaat 52397 Query: 531 ggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatc 590 | |||||| ||| || ||||||| ||||||| ||||||||||||||| || |||| | Sbjct: 52398 gtaatccccacttcccttctttttgatttcccttctatttagatatg----atatagacc 52453 Query: 591 taattcttatataaagaaaact 612 ||||||||||| |||||||||| Sbjct: 52454 taattcttatacaaagaaaact 52475
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 728 bits (367), Expect = 0.0 Identities = 559/622 (89%), Gaps = 15/622 (2%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 52397 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 52456 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 52457 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagac 52516 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 52517 tgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 52576 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 52577 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 52636 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct: 52637 ttcactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgc 52696 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 52697 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 52756 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| Sbjct: 52757 attaatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatc 52815 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaa------- 471 |||||||||||||||||||| || ||||||||||||| ||||| |||||| || Sbjct: 52816 cagaacttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaaggcaag 52875 Query: 472 -agcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaat 530 |||||||| ||||||||||||||| | |||| | ||||| |||| |||||||||||| Sbjct: 52876 gagcgcttactttagcctttgtttcttttgtgatatgtcttccttaaggattcatccaat 52935 Query: 531 ggaatcccaactccctttcttttggatttccattctatttagatatggtgtatgtagatc 590 | |||||| ||| | ||||||| ||||||| ||||||||||||||| || |||| | Sbjct: 52936 gtaatccccacttgccttctttttgatttcccttctatttagatatg----atatagacc 52991 Query: 591 taattcttatataaagaaaact 612 ||||||||||| |||||||||| Sbjct: 52992 taattcttatacaaagaaaact 53013
>emb|X00408.1|CHHV01 Hordeum vulgare chloroplast genes for ATPase subunits B and E, transfer RNA2-Met and transfer RNA1-Val Length = 3819 Score = 720 bits (363), Expect = 0.0 Identities = 385/394 (97%) Strand = Plus / Minus Query: 225 aagcttctntgntncttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaat 284 |||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3819 aagcttctctggtccttcactaaccggggctaaaatgcctgaaatcgaaaatgccaaaat 3760 Query: 285 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaa 344 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3759 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaa 3700 Query: 345 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3699 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 3640 Query: 405 attgtcaatttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttc 464 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 3639 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttc 3580 Query: 465 aaacaaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattca 524 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 3579 aaacaaaagcgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagcttca 3520 Query: 525 tccaatggaatcccaactccctttcttttggatttccattctatttagatatggtgtatg 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3519 tccaatggaatcccaactccctttcttttggatttccattctatttagatatggtgtatg 3460 Query: 585 tagatctaattcttatataaagaaaactttatcg 618 |||||||||||||||||||||||||||||||||| Sbjct: 3459 tagatctaattcttatataaagaaaactttatcg 3426
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 700 bits (353), Expect = 0.0 Identities = 527/582 (90%), Gaps = 9/582 (1%) Strand = Plus / Minus Query: 7 ttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgat 65 |||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||||||||| Sbjct: 12589470 ttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagcttcgat 12589411 Query: 66 aaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttc 125 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 12589410 aaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccgtttc 12589351 Query: 126 cacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtaccca 185 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 12589350 cacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgtaacca 12589291 Query: 186 agcc----cctcccatgggttctatacccgattcataactagaaagcttctntgntnctt 241 |||| || |||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 12589290 agcctcctccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 12589231 Query: 242 cactaaccggggctaaaagccctgaaatcgaaaatgc--caaaataggaataaggcttgc 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 12589230 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaaataggaataaggcttgc 12589171 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 12589170 tattattagaaatgcccaaaaaatatcatattcatgaagcagaaacataaatgtactccc 12589111 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 12589110 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 12589052 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 12589051 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 12588992 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 12588991 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcct 12588932 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 12588931 gactccctttctttttgatttcctttctatttaggtatggtg 12588890
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 700 bits (353), Expect = 0.0 Identities = 527/582 (90%), Gaps = 9/582 (1%) Strand = Plus / Minus Query: 7 ttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgat 65 |||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||||||||| Sbjct: 71783 ttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagcttcgat 71724 Query: 66 aaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttc 125 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 71723 aaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagaccgtttc 71664 Query: 126 cacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtaccca 185 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| Sbjct: 71663 cacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattgtaacca 71604 Query: 186 agcc----cctcccatgggttctatacccgattcataactagaaagcttctntgntnctt 241 |||| || |||||||||||||||||||||||||||||||||||||||| || | ||| Sbjct: 71603 agcctcctccccccatgggttctatacccgattcataactagaaagcttctctggtcctt 71544 Query: 242 cactaaccggggctaaaagccctgaaatcgaaaatgc--caaaataggaataaggcttgc 299 ||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 71543 cacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaaataggaataaggcttgc 71484 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 |||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||| Sbjct: 71483 tattattagaaatgcccaaaaaatatcatattcatgaagcagaaacataaatgtactccc 71424 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 71423 attaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttata 71365 Query: 419 cagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgctt 478 ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| |||| Sbjct: 71364 cagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggctt 71305 Query: 479 agtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatggaatccc 538 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct: 71304 agtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaatggaatcct 71245 Query: 539 aactccctttcttttggatttccattctatttagatatggtg 580 |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 71244 gactccctttctttttgatttcctttctatttaggtatggtg 71203
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 682 bits (344), Expect = 0.0 Identities = 482/527 (91%), Gaps = 2/527 (0%) Strand = Plus / Plus Query: 55 aaagcttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtataga 114 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| Sbjct: 77629 aaagcttcgataaaaacggatatacccaatacgtcgaaactcattgcccaaaggtagaga 77688 Query: 115 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcgg 174 ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 77689 aagaccgtttcgacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcgg 77748 Query: 175 aattgtacccaagcccctcccatgggttctatacccgattcataactagaaagcttctnt 234 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 77749 aattgtaaccaagccccccccatgggttctatacccgattcataactagaaagcttctct 77808 Query: 235 gntncttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataagg 294 | | |||||| |||||| |||||||| |||||||| ||||||| ||||||| ||||||| Sbjct: 77809 ggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaataagg 77868 Query: 295 cttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgta 353 ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| Sbjct: 77869 cttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgta 77928 Query: 354 ctcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaat 413 ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct: 77929 ctcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaat 77987 Query: 414 ttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaag 473 |||| ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| Sbjct: 77988 ttatacagaatttctctcttttccttggtgaaacaaggatcggtttttctcaaaccaaag 78047 Query: 474 cgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgga 533 ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || Sbjct: 78048 ggcttagtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaataga 78107 Query: 534 atcccaactccctttcttttggatttccattctatttagatatggtg 580 ||||| |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 78108 atcccgactccctttctttttgatttcctttctatttaggtatggtg 78154
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 682 bits (344), Expect = 0.0 Identities = 482/527 (91%), Gaps = 2/527 (0%) Strand = Plus / Plus Query: 55 aaagcttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtataga 114 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| Sbjct: 23634948 aaagcttcgataaaaacggatatacccaatacgtcgaaactcattgcccaaaggtagaga 23635007 Query: 115 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcgg 174 ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 23635008 aagaccgtttcgacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcgg 23635067 Query: 175 aattgtacccaagcccctcccatgggttctatacccgattcataactagaaagcttctnt 234 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct: 23635068 aattgtaaccaagccccccccatgggttctatacccgattcataactagaaagcttctct 23635127 Query: 235 gntncttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataagg 294 | | |||||| |||||| |||||||| |||||||| ||||||| ||||||| ||||||| Sbjct: 23635128 ggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaataagg 23635187 Query: 295 cttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgta 353 ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| Sbjct: 23635188 cttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgta 23635247 Query: 354 ctcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaat 413 ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| Sbjct: 23635248 ctcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaat 23635306 Query: 414 ttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaag 473 |||| ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| Sbjct: 23635307 ttatacagaatttctctcttttccttggtgaaacaaggatcggtttttctcaaaccaaag 23635366 Query: 474 cgcttagtttagcctttgtttcctctgtgctgcatcttctttaaagattcatccaatgga 533 ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || Sbjct: 23635367 ggcttagtttagcctttgtttcctctttgccacgtcttctttaaagattcatccaataga 23635426 Query: 534 atcccaactccctttcttttggatttccattctatttagatatggtg 580 ||||| |||||||||||||| ||||||| |||||||||| ||||||| Sbjct: 23635427 atcccgactccctttctttttgatttcctttctatttaggtatggtg 23635473 Score = 599 bits (302), Expect = e-168 Identities = 447/491 (91%), Gaps = 5/491 (1%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 14047933 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 14047992 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 14047993 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 14048052 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 14048053 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattg 14048112 Query: 180 tacccaag-cccctcccatgggttctatacccgattcataactagaaagcttctntgntn 238 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || | Sbjct: 14048113 taaccaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtc 14048172 Query: 239 cttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggctt 297 |||||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 14048173 cttcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggctt 14048232 Query: 298 gctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactc 356 |||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| Sbjct: 14048233 gctattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactc 14048292 Query: 357 ccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattta 416 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 14048293 ccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattta 14048351 Query: 417 tccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgc 476 | ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| || Sbjct: 14048352 tacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggc 14048411 Query: 477 ttagtttagcc 487 ||||||||||| Sbjct: 14048412 ttagtttagcc 14048422 Score = 595 bits (300), Expect = e-167 Identities = 448/494 (90%), Gaps = 8/494 (1%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 9749025 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 9748966 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 9748965 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 9748906 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 9748905 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 9748846 Query: 180 tacccaag----cccctcccatgggttctatacccgattcataactagaaagcttctntg 235 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct: 9748845 taaccaagccccccccccccatgggttctatacccgattcataactagaaagcttctctg 9748786 Query: 236 ntncttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataagg 294 | |||||| |||||| || |||||| |||||||| ||||||| ||||||||||||||| Sbjct: 9748785 gtccttcacaaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataagg 9748726 Query: 295 cttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgta 353 ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| Sbjct: 9748725 cttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgta 9748666 Query: 354 ctcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaat 413 |||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 9748665 ctcccattaatgtggaatagttggaac-tgaattagtcaattcaagtcagcattgtcaat 9748607 Query: 414 ttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaag 473 |||| ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| Sbjct: 9748606 ttatacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaag 9748547 Query: 474 cgcttagtttagcc 487 ||||||||||||| Sbjct: 9748546 ggcttagtttagcc 9748533
>gb|AY243565.1| Hordeum vulgare chloroplast Ndh complex operon, complete sequence Length = 1778 Score = 660 bits (333), Expect = 0.0 Identities = 353/360 (98%), Gaps = 1/360 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 364 ggctccttttcgccatgcataaactaaaccgacaactaagataagcacgaaaatcaaagc 305 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 245 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 185 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 184 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctctggtcc 125 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 65 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataatgtactccca 359 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 64 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataatgtactccca 5
>emb|X17438.1|CHZMNPOO Maize chloroplast ndhC, psbG genes for NDH-C, PSII-G and ORF159 Length = 1933 Score = 628 bits (317), Expect = e-177 Identities = 407/435 (93%), Gaps = 3/435 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 434 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 375 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 374 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtagagaaagac 315 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 314 tgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 255 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||| ||||||||||||||||||| || | | Sbjct: 254 taaccaagccccccccatgggttctatacccgantcataactagaaagcttctctggtcc 195 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct: 194 ttcactaaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgc 135 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccc 358 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 134 tattattagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactccc 75 Query: 359 attaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaatttatc 418 |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||||| Sbjct: 74 attaatgtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatc 16 Query: 419 cagaacttctctctt 433 ||||||||||||||| Sbjct: 15 cagaacttctctctt 1
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 599 bits (302), Expect = e-168 Identities = 447/491 (91%), Gaps = 5/491 (1%) Strand = Plus / Plus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 161813 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 161872 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 161873 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 161932 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 161933 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattg 161992 Query: 180 tacccaag-cccctcccatgggttctatacccgattcataactagaaagcttctntgntn 238 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || | Sbjct: 161993 taaccaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtc 162052 Query: 239 cttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggctt 297 |||||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 162053 cttcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggctt 162112 Query: 298 gctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactc 356 |||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| Sbjct: 162113 gctattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactc 162172 Query: 357 ccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattta 416 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 162173 ccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattta 162231 Query: 417 tccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgc 476 | ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| || Sbjct: 162232 tacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggc 162291 Query: 477 ttagtttagcc 487 ||||||||||| Sbjct: 162292 ttagtttagcc 162302
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 599 bits (302), Expect = e-168 Identities = 447/491 (91%), Gaps = 5/491 (1%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 124959 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 124900 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 124899 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 124840 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 124839 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattg 124780 Query: 180 tacccaag-cccctcccatgggttctatacccgattcataactagaaagcttctntgntn 238 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || | Sbjct: 124779 taaccaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtc 124720 Query: 239 cttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggctt 297 |||||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 124719 cttcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggctt 124660 Query: 298 gctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactc 356 |||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| Sbjct: 124659 gctattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactc 124600 Query: 357 ccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattta 416 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 124599 ccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattta 124541 Query: 417 tccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgc 476 | ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| || Sbjct: 124540 tacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggc 124481 Query: 477 ttagtttagcc 487 ||||||||||| Sbjct: 124480 ttagtttagcc 124470
>dbj|AK069240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010F18, full insert sequence Length = 3557 Score = 599 bits (302), Expect = e-168 Identities = 447/491 (91%), Gaps = 5/491 (1%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 1808 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 1749 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1748 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 1689 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| Sbjct: 1688 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcagaattg 1629 Query: 180 tacccaag-cccctcccatgggttctatacccgattcataactagaaagcttctntgntn 238 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || | Sbjct: 1628 taaccaagcccccccccatgggttctatacccgattcataactagaaagcttctctggtc 1569 Query: 239 cttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataaggctt 297 |||||| |||||| || |||||| |||||||| ||||||| |||||||||||||||||| Sbjct: 1568 cttcacgaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggctt 1509 Query: 298 gctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactc 356 |||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||||||| Sbjct: 1508 gctattattagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactc 1449 Query: 357 ccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaattta 416 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct: 1448 ccattaatgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaattta 1390 Query: 417 tccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaagcgc 476 | ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| || Sbjct: 1389 tacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaagggc 1330 Query: 477 ttagtttagcc 487 ||||||||||| Sbjct: 1329 ttagtttagcc 1319
>emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026I12, complete sequence Length = 128574 Score = 595 bits (300), Expect = e-167 Identities = 448/494 (90%), Gaps = 8/494 (1%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 81231 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 81172 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 81171 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 81112 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 81111 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 81052 Query: 180 tacccaag----cccctcccatgggttctatacccgattcataactagaaagcttctntg 235 || ||||| |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct: 81051 taaccaagccccccccccccatgggttctatacccgattcataactagaaagcttctctg 80992 Query: 236 ntncttcactaaccggggc-taaaagccctgaaatcgaaaatgccaaaataggaataagg 294 | |||||| |||||| || |||||| |||||||| ||||||| ||||||||||||||| Sbjct: 80991 gtccttcacaaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataagg 80932 Query: 295 cttgctattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgta 353 ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| Sbjct: 80931 cttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgta 80872 Query: 354 ctcccattaatgtggaataggcggaacttaaattagtcaattcaattcagcattgtcaat 413 |||||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||| Sbjct: 80871 ctcccattaatgtggaatagttggaac-tgaattagtcaattcaagtcagcattgtcaat 80813 Query: 414 ttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaacaaaag 473 |||| ||||| |||||||||||||| || |||||||| ||| |||| |||||| |||| Sbjct: 80812 ttatacagaatttctctcttttcctcggtgaaacaaggatcggtttttctcaaaccaaag 80753 Query: 474 cgcttagtttagcc 487 ||||||||||||| Sbjct: 80752 ggcttagtttagcc 80739
>ref|NM_197447.1| Oryza sativa (japonica cultivar-group) NADH dehydrogenase ND3 (OSJNBb0005J14.29), mRNA Length = 363 Score = 502 bits (253), Expect = e-139 Identities = 324/348 (93%), Gaps = 1/348 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 348 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 289 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 288 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 229 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 228 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 169 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 168 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 109 Query: 240 ttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgc 299 ||||| |||||| |||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct: 108 ttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgc 49 Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 |||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 48 tattattagaaatgcccaaaaaatatcatattcgtgaagcagaaacat 1
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 377 bits (190), Expect = e-101 Identities = 243/261 (93%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 33553318 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 33553259 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 33553258 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 33553199 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 33553198 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 33553139 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 33553138 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 33553079 Query: 240 ttcactaaccggggctaaaag 260 ||||| |||||| |||||||| Sbjct: 33553078 ttcacgaaccggagctaaaag 33553058 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 33512946 tagcgtattcggaattgtaaccaagc 33512971 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 33512872 aaacggaaacgcccaatacatcgaaactcattaccca 33512908 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 2523840 aaacggaaacgcccaatacatcgaaactcattaccca 2523876 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 aattagtcaattcaattcagcatt 407 ||||||||||||||| |||||||| Sbjct: 19318135 aattagtcaattcaagtcagcatt 19318158
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 377 bits (190), Expect = e-101 Identities = 243/261 (93%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||| ||||| Sbjct: 98515 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacgaaaatgaaagc 98456 Query: 60 ttcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagac 119 ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 98455 ttcgataaaaacggatatacccaatacgtcgaaactcattgcccaagggtagagaaagac 98396 Query: 120 ggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattg 179 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 98395 cgtttccacatcaaaaacaacaaaaactagcgcaaacatgtaatagcgtattcggaattg 98336 Query: 180 tacccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnc 239 || ||||||||| |||||||||||||||||||||||||||||||||||||||| || | | Sbjct: 98335 taaccaagccccccccatgggttctatacccgattcataactagaaagcttctctggtcc 98276 Query: 240 ttcactaaccggggctaaaag 260 ||||| |||||| |||||||| Sbjct: 98275 ttcacgaaccggagctaaaag 98255 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 58143 tagcgtattcggaattgtaaccaagc 58168 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 58069 aaacggaaacgcccaatacatcgaaactcattaccca 58105
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 331 bits (167), Expect = 2e-87 Identities = 291/334 (87%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 52199 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctataaatacaga 52258 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||| ||||| ||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52259 tacacctaatacatcgaaactcattgcccatggataaagaaaaactgtttcaacatcaaa 52318 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| || Sbjct: 52319 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcattgcc 52378 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||||||||||||||| || |||| || ||| |||| |||||| Sbjct: 52379 cattggttctatacccgattcataactagagagtttctctggccctttgctaatcggggc 52438 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| ||| ||||| |||||||||||||||||||||| |||| |||||||||||||| Sbjct: 52439 taaaaccccggaaatgaaaaatgccaaaataggaataagacttgatattattagaaatgc 52498 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacata 348 |||||||||||||||||||||||||||||||||| Sbjct: 52499 ccaaaaaatatcatattcgtaaagcagaaacata 52532
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 319 bits (161), Expect = 6e-84 Identities = 301/348 (86%), Gaps = 1/348 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||| |||| |||| || |||| |||||| ||| |||||| Sbjct: 54162 gctccttttcgccatgcataaactgaaccaacaattaggataagcacgaaaattaaagct 54221 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| ||||||||||||||||| ||||||||||||||||| || || ||||| || Sbjct: 54222 tctataaatacggatacacccaatacatcgaaactcattgcccatggataaagaaaaacc 54281 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| ||||||||||| |||||||| || |||||||||||||| || ||||| |||||| Sbjct: 54282 gtttcaacatcaaaaacgacaaaaactagagcaaacatataataacggattcgaaattgt 54341 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||||||||||||||||||||| |||| || | || Sbjct: 54342 aaccaagcatcgcccattggttctatacccgattcataactagaaagtttctctggtcct 54401 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | ||||| ||| ||||||| || ||||| ||||||||||||| ||||||| |||| | Sbjct: 54402 ttactaatcggagctaaaactccggaaataaaaaatgccaaaatgggaataacacttgat 54461 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct: 54462 attattagaaaagcccagaaaatatcatattcgtaaagcagaaacata 54509
>gb|AY936342.1| Evolvulus glomeratus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1744 Score = 317 bits (160), Expect = 2e-83 Identities = 300/347 (86%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| ||||||||||||||| ||| ||||||| |||| | ||| |||||| Sbjct: 347 gctccctttcgccatgcataaactaaaccaccaattaagataagcacaaaaatgaaagct 288 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 |||| ||| || |||||||||||||| ||||||||||||||||| ||||| ||||| || Sbjct: 287 tcgagaaatacagatacacccaatacatcgaaactcattgcccatgggtaaagaaaaacc 228 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 227 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgt 168 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| ||||||||||||||||| |||| || | Sbjct: 167 aaccaagcatcgcccattggttctatacctgattcataactagaaagtttctctggcccc 108 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||||||||||| ||| |||||| |||| | |||||||||||||||||| | | Sbjct: 107 ttgctaatcggggctaaaaccccggaaatcaaaaaagtcaaaataggaataaggctggat 48 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 47 attattagaaatgcccaaaaaatatcatattcgtaaagtagaaacat 1
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 313 bits (158), Expect = 4e-82 Identities = 320/373 (85%), Gaps = 2/373 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||| |||| |||||| |||| |||||| |||||||||| Sbjct: 53847 gctccttttcgccatgcataaactgaaccaacaactgggataagcacgaaaatcaaagct 53906 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| ||| |||| ||||||| || ||||||| ||||| || || |||||||| Sbjct: 53907 tctataaatacgtatacgcccaatatatcaaaactcacggcccatggataaagaaagacc 53966 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||| Sbjct: 53967 gtttcgacatcaaaaacaacaaaaacgagagcaaacatgtaatagcggattcgaaattgt 54026 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | || || ||||||||||||||||||||||| || ||||||| || | || Sbjct: 54027 atccaagcatcccctattggttctatacccgattcataactggagagcttctctggtcct 54086 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 ||||||| |||||||||| ||| ||||| |||||||||||||||||||| |||| | Sbjct: 54087 tcactaattggggctaaaaccccggaaattagaaatgccaaaataggaataacacttgat 54146 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactccca 359 || |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| | Sbjct: 54147 atcattagaaatgcccagaaaatatcatattcgtaaagcagaaacatagatgtactccta 54206 Query: 360 ttaatgtggaata 372 | ||||| ||||| Sbjct: 54207 tgaatgtagaata 54219
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 313 bits (158), Expect = 4e-82 Identities = 320/373 (85%), Gaps = 2/373 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| |||||||||| |||| |||| | |||| |||||| ||| |||||| Sbjct: 50995 gctccctttcgccatgcataaactgaaccaacaattgggataagcacgaaaattaaagct 51054 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| || |||||||||| ||| ||||||||||||||||| || || |||||||| Sbjct: 51055 tctataaatacagatacacccagtacatcgaaactcattgcccatggataaagaaagacc 51114 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||||||| Sbjct: 51115 gtttcaacatcaaaaacaacaaaaactagagcaaacatgtaatagcggattcggaattgt 51174 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| |||||||||||||| ||||||| || | || Sbjct: 51175 aaccaagcatcccccattggttctatacctgattcataactagagagcttctctggtcct 51234 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 |||| || ||||||||||| || ||||| |||||||||||||||||| | |||| | Sbjct: 51235 tcacgaatcggggctaaaactccggaaattagaaatgccaaaataggaatgacacttgat 51294 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactccca 359 ||||||||||||| ||| |||||||||||||||| ||||||||||||| ||| ||||| | Sbjct: 51295 attattagaaatgcccagaaaatatcatattcgtgaagcagaaacatagatgcactccta 51354 Query: 360 ttaatgtggaata 372 | ||||||||||| Sbjct: 51355 tgaatgtggaata 51367
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 311 bits (157), Expect = 1e-81 Identities = 300/348 (86%), Gaps = 1/348 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| ||||||||||||||| |||| || |||| |||||| ||| |||||| Sbjct: 54375 gctccttttcgccatgcataaactaaaccaacaattaggataagcacgaaaattaaagct 54434 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||| |||||||| ||||||||||||||||| || || ||||| || Sbjct: 54435 tctataaatacggatacccccaatacatcgaaactcattgcccatggataaagaaaaacc 54494 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 54495 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgt 54554 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| ||||||||||| ||||| |||| || || Sbjct: 54555 aaccaagcatcgcccattggttctatacctgattcataactcgaaagtttctctggccct 54614 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||||||||||| || ||||| |||||||||||||||||||| |||| | Sbjct: 54615 ttgctaatcggggctaaaattccggaaattmgaaatgccaaaataggaataacacttgat 54674 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 54675 attattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 54722
>gb|AY936340.1| Falkia repens NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1715 Score = 301 bits (152), Expect = 1e-78 Identities = 298/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| ||||||||||||||| ||| ||||||| |||||| ||| |||||| Sbjct: 347 gctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaataaaagct 288 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || | ||| || |||||||||||||| ||||||||||||||||| || || ||||| || Sbjct: 287 tctagaaatacagatacacccaatacatcgaaactcattgcccatggataaagaaaaacc 228 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||| Sbjct: 227 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgt 168 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| ||||||||||||||||| |||| || || Sbjct: 167 aaccaagcatcgcccattggttctatacctgattcataactagaaagtttctctggccct 108 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | ||| ||||||||||| ||| ||||| |||| |||||||||||||||||||| | | Sbjct: 107 ttgttaatcggggctaaaaccccggaaataaaaaaagccaaaataggaataaggctggat 48 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 47 attattagaaatgcccaaaaaatatcatattcgtaaagtagaaacat 1
>gb|AY936338.1| Jacquemontia tamnifolia NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1706 Score = 301 bits (152), Expect = 1e-78 Identities = 285/331 (86%) Strand = Plus / Minus Query: 17 cataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacggata 76 ||||||||||||| ||| ||||||| |||| | |||||||||||| ||||| || |||| Sbjct: 331 cataaactaaaccaccaattaagataagcacaaaaatcaaagcttctataaatacagata 272 Query: 77 cacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaaaa 136 ||||||||| ||||||||||||||||| || || ||||| || ||||| |||||||||| Sbjct: 271 gacccaatacatcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaaaa 212 Query: 137 caacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctccca 196 ||||||||||||| |||||||||||||| || ||||| ||||||| |||||| | |||| Sbjct: 211 caacaaaaacgagagcaaacatataataacggattcgaaattgtaaccaagcatcgccca 152 Query: 197 tgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggcta 256 ||||||| ||||| ||||||||||||||||| |||| || ||| |||| |||||||| Sbjct: 151 tgggttcgataccggattcataactagaaagtttctctgggcctttgctaatcggggcta 92 Query: 257 aaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtcc 316 ||| || |||||| |||| ||||||||||||| ||||| | |||||||||||||| || Sbjct: 91 aaacgccggaaatcaaaaaagccaaaataggaaacaggctggatattattagaaatgccc 32 Query: 317 aaaaaatatcatattcgtaaagcagaaacat 347 |||||||||||||||||||||| |||||||| Sbjct: 31 aaaaaatatcatattcgtaaagtagaaacat 1
>gb|AY936336.1| Operculina aequisepala NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1721 Score = 301 bits (152), Expect = 1e-78 Identities = 298/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| ||||||||||||||| ||| ||||||| |||||| ||| |||||| Sbjct: 347 gctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaatgaaagct 288 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || | ||| || |||||||||||||| ||||||||||||||||| || || ||||| || Sbjct: 287 tctagaaatacagatacacccaatacatcgaaactcattgcccatggataaagaaaaacc 228 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 227 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgt 168 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| ||||||||||||||||| |||| || || Sbjct: 167 aaccaagcatcgcccataggttctatacctgattcataactagaaagtttctctggccct 108 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||||||||||| ||| |||| |||| |||||||||||||||||||| | | Sbjct: 107 ttgctaatcggggctaaaaccccggaaagaaaaaaagccaaaataggaataaggctggat 48 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct: 47 attattagaaatgcccaaaaaagatcatattcgtaaagtagaaacat 1
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 301 bits (152), Expect = 1e-78 Identities = 288/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 51502 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51561 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51562 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51621 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51622 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51681 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 51682 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51741 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 51742 taacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaatgc 51801 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 51802 ccaaaaaaaatcatattcgtaaagcagaaacataa 51836
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 301 bits (152), Expect = 1e-78 Identities = 288/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 51421 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51480 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51481 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51540 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51541 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51600 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| || ||| |||| |||||| Sbjct: 51601 cattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggggc 51660 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51661 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51720 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 51721 ccaaaaaaaatcatattcgtaaagcagaaacataa 51755
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 301 bits (152), Expect = 1e-78 Identities = 288/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 51417 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51476 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51477 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51536 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51537 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51596 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| || ||| |||| |||||| Sbjct: 51597 cattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggggc 51656 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51657 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51716 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 51717 ccaaaaaaaatcatattcgtaaagcagaaacataa 51751
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 299 bits (151), Expect = 6e-78 Identities = 287/334 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 |||||||||| |||| |||| || |||| |||||| |||||||||||| | ||| ||||| Sbjct: 50654 tgcataaactgaaccaacaattaggataagcacgaaaatcaaagcttctagaaatacgga 50713 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||| ||||||||||||||||| || || |||||||| ||||| |||||||| Sbjct: 50714 tacacccaatacatcgaaactcattgcccatggataaagaaagaccgtttcaacatcaaa 50773 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| | |||||||||||||| || |||||||||||||||||||| | || Sbjct: 50774 aacaacaaaaactaaagcaaacatataatatcggattcggaattgtacccaagcatcccc 50833 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 || |||||||||||||||||||||||||||||||||| | | |||| || ||||| Sbjct: 50834 tattggttctatacccgattcataactagaaagcttctcgggtccttccctcgttggggc 50893 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || ||||| ||||||| ||||||||||||| |||| ||||| |||||||| Sbjct: 50894 taaaactccggaaattaaaaatgctaaaataggaataacacttgatattagtagaaatgc 50953 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacata 348 ||| |||||||||||||||| ||||||||||||| Sbjct: 50954 ccagaaaatatcatattcgtgaagcagaaacata 50987 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 attctatttagatatggtgta 582 ||||||||||||||||||||| Sbjct: 51170 attctatttagatatggtgta 51190
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 295 bits (149), Expect = 9e-77 Identities = 298/348 (85%), Gaps = 1/348 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| ||||||||||||||| |||| ||||||| |||| | ||| |||||| Sbjct: 49532 gctccctttcgccatgcataaactaaaccaacaattaagataagcacaaaaattaaagct 49591 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || | ||| || |||||||| ||||| ||||||||||||||||| || || ||||| || Sbjct: 49592 tctacaaatacagatacacctaatacatcgaaactcattgcccatggataaagaaaaacc 49651 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 |||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||| Sbjct: 49652 gtttccacatcaaaaacaacaaaaacaagagcaaacatataatagcggattctaaattgt 49711 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | || || ||||||||||| ||||||||||||||||| |||| | | || Sbjct: 49712 aaccaagcgtcacctattggttctatacctgattcataactagaaagtttctccggtcct 49771 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | ||| ||||||||||| || ||||| ||||| |||||||||||||||| |||| | Sbjct: 49772 ttgctactcggggctaaaaatcccgaaatgaaaaataccaaaataggaataagacttgat 49831 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct: 49832 attatcagaaatgcccaaaaaatatcatattcgtaaagcagaaacata 49879
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 293 bits (148), Expect = 3e-76 Identities = 287/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 52341 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52400 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52401 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52460 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52461 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52520 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 52521 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52580 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52581 taacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaatgc 52640 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 52641 ccaaaaaaaatcatattcgtaaagcagaaacataa 52675
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 293 bits (148), Expect = 3e-76 Identities = 316/371 (85%), Gaps = 2/371 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||||||||||||| || |||| |||||| ||| |||||| Sbjct: 52870 gctccttttcgccatgcataaactaaaccgacaattaggataagcacgaaaattaaagct 52929 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||| || ||||| || |||||||||||||| || || ||||| || Sbjct: 52930 tctataaagacggatacccctaatacatcaaaactcattgcccacggataaagaaaaact 52989 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||| Sbjct: 52990 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgt 53049 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 |||||||| | ||||| |||||||| |||||||||||||| ||||| |||| || || Sbjct: 53050 acccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctct 53109 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| |||||||||| || ||||| |||||||||||||||||||| |||| | Sbjct: 53110 ttgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttgat 53169 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccca 359 |||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| | Sbjct: 53170 attattagaaatacccagaaaatatcatattcgtaaagcagaaacataaacgtactccta 53229 Query: 360 ttaatgtggaa 370 | ||||||||| Sbjct: 53230 tcaatgtggaa 53240
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 293 bits (148), Expect = 3e-76 Identities = 313/367 (85%), Gaps = 2/367 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||| |||| || | | |||| |||||| ||| |||||| Sbjct: 54849 gctccttttcgccatgcataaactgaaccaacgattgggataagcacgaaaattaaagct 54908 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||| |||||||| ||||||||||| ||||| || || ||||| ||| Sbjct: 54909 tctataaatacggatacgcccaatacatcgaaactcatggcccatggataaagaaaaacg 54968 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||||||| Sbjct: 54969 gtttcgacatcaaaaacaacaaaaactagggcaaacatgtaatagcggattcggaattgt 55028 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| |||||||||||||| | ||| | || | || Sbjct: 55029 atccaagcatcccccattggttctatacctgattcataactagagaccttttctggtcct 55088 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | ||||| ||||||||||| || ||||| |||||||||||||||||||| |||| | Sbjct: 55089 tgactaatcggggctaaaactccagaaattagaaatgccaaaataggaataacacttgat 55148 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata-atgtactccca 359 || |||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||| | Sbjct: 55149 atcattagaaatgcccagaaaatatcatattcgtgaagcagaaacatagatgtactccta 55208 Query: 360 ttaatgt 366 | ||||| Sbjct: 55209 tgaatgt 55215
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 293 bits (148), Expect = 3e-76 Identities = 287/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 51366 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 51425 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51426 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51485 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51486 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51545 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 51546 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51605 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 51606 taacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaatgc 51665 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 51666 ccaaaaaaaatcatattcgtaaagcagaaacataa 51700
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 293 bits (148), Expect = 3e-76 Identities = 316/371 (85%), Gaps = 2/371 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||||||||||||| || |||| |||||| ||| |||||| Sbjct: 52844 gctccttttcgccatgcataaactaaaccgacaattaggataagcacgaaaattaaagct 52903 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||| || ||||| || |||||||||||||| || || ||||| || Sbjct: 52904 tctataaagacggatacccctaatacatcaaaactcattgcccacggataaagaaaaact 52963 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||| Sbjct: 52964 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgt 53023 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 |||||||| | ||||| |||||||| |||||||||||||| ||||| |||| || || Sbjct: 53024 acccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctct 53083 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| |||||||||| || ||||| |||||||||||||||||||| |||| | Sbjct: 53084 ttgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttgat 53143 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat-aatgtactccca 359 |||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||| | Sbjct: 53144 attattagaaatacccagaaaatatcatattcgtaaagcagaaacataaacgtactccta 53203 Query: 360 ttaatgtggaa 370 | ||||||||| Sbjct: 53204 tcaatgtggaa 53214
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 293 bits (148), Expect = 3e-76 Identities = 287/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 52339 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52398 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52399 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52458 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52459 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52518 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 52519 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52578 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52579 taacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaatgc 52638 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 52639 ccaaaaaaaatcatattcgtaaagcagaaacataa 52673
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 293 bits (148), Expect = 3e-76 Identities = 287/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| |||||| ||| |||||||| ||||| || || Sbjct: 52289 tgcataaactaaaccaataattaagataagcacgaaaatgaaagcttctataaatacaga 52348 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52349 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52408 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 52409 aacaacaaaaactagagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 52468 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 52469 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 52528 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| | | |||||||||||||| Sbjct: 52529 taacactccggaaattaaaaatgccaaaataggaacaaggatggatattattagaaatgc 52588 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 52589 ccaaaaaaaatcatattcgtaaagcagaaacataa 52623
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 287 bits (145), Expect = 2e-74 Identities = 297/348 (85%), Gaps = 1/348 (0%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| ||||||||| ||||| | |||||||||| |||||| ||| | |||| Sbjct: 14159 gctccttttcgccatgcataaaccaaaccaagaactaagataagcacgaaaatgagagct 14100 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||| ||||||| |||||||||| |||||| || || ||||| | | Sbjct: 14099 tctataaatacggatacccccaatatatcgaaactcagtgcccatggataaagaaaaatg 14040 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| | |||||||||||||| |||||||| |||||| Sbjct: 14039 gtttcaacatcaaaaacaacaaaaactaaagcaaacatataataacgtattcgaaattgt 13980 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||||||||||||||| ||||| |||| || || Sbjct: 13979 aaccaagcatcgcccattggttctatacccgattcataactcgaaagtttctctggccct 13920 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 ||| |||||||||||| || ||||| |||||||||||||||||||| |||| | Sbjct: 13919 atgctagtcggggctaaaagtccggaaattcgaaatgccaaaataggaataacacttgat 13860 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 13859 attattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 13812
>gb|AY936344.1| Dinetus truncatus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1710 Score = 285 bits (144), Expect = 8e-74 Identities = 296/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||| ||||||| ||||||||||||||| ||| ||||||| |||||| ||| |||||| Sbjct: 347 gctccctttcgccatgcataaactaaaccaccaattaagataagcacgaaaatgaaagct 288 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || | ||| ||||||||||||||||| ||||||||||||||||| || || ||||| || Sbjct: 287 tctagaaatacggatacacccaatacatcgaaactcattgcccatggataaagaaaaacc 228 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| ||||||||||||||||| || || |||||||||||||| || |||| |||||| Sbjct: 227 gtttcaacatcaaaaacaacaaacactagagcaaacatataataacggattctaaattgt 168 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||| ||||||||||||||||| |||| || | Sbjct: 167 aaccaagcatcgcccatcggttctatacctgattcataactagaaagtttctctggcccc 108 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||||||||||| || |||||| |||| |||||||||||||||||| | | | Sbjct: 107 ttgctaagcggggctaaaactccggaaatcaaaaaagccaaaataggaataaggatggat 48 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct: 47 attattagaaatgcccaaaaaagatcatattcgtaaagtagaaacat 1
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 285 bits (144), Expect = 8e-74 Identities = 286/335 (85%) Strand = Plus / Minus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 |||||||||| |||| |||| || |||| |||||| || |||||||| ||||| ||||| Sbjct: 11072 tgcataaactgaaccaacaattaggataagcacgaatatgaaagcttctataaatacgga 11013 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 ||| || ||||| |||||||||||||||||||| || ||||| || ||||| |||||||| Sbjct: 11012 tacccctaatacatcgaaactcattgcccaaggataaagaaaaaccgtttcaacatcaaa 10953 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 ||||||||||| ||| |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 10952 aacaacaaaaatgagagcaaacatataataacggattcgaaattgtaaccaagcatcacc 10893 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 || |||||||| |||||||||||||||||||| |||| || | | | |||| |||||| Sbjct: 10892 tattggttctattcccgattcataactagaaagtttctctggtcccttgctaatcggggc 10833 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || ||||| |||||||||||||||||||| |||| |||||||||||||| Sbjct: 10832 taaaattccagaaattagaaatgccaaaataggaataaaacttgatattattagaaatgc 10773 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||||||||||||||||||| |||||||||| Sbjct: 10772 ccaaaaaatatcatattcgtaaagaagaaacataa 10738
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 283 bits (143), Expect = 3e-73 Identities = 285/334 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| ||||||| |||||| ||| |||||||| | ||| || || Sbjct: 49925 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctacaaatacaga 49984 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||| ||||| || |||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 49985 tacacctaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 50044 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || ||||||||||||||||| |||| ||||||| |||||| | || Sbjct: 50045 aacaacaaaaactagagcaaacatataatagcggattctaaattgtaaccaagcgtcgcc 50104 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 || ||||||||||||||||||||||||||||| |||| | | ||| |||| ||| || Sbjct: 50105 tattggttctatacccgattcataactagaaagtttctccggtcctttgctaatcggagc 50164 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || ||||| ||||| |||||||||||||||| |||| ||| |||||||||| Sbjct: 50165 taaaaatcccgaaatgaaaaataccaaaataggaataagacttgatatgattagaaatgc 50224 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacata 348 |||||||||||||||||| ||||||||||||||| Sbjct: 50225 ccaaaaaatatcatattcataaagcagaaacata 50258
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 283 bits (143), Expect = 3e-73 Identities = 285/334 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| ||||||| |||||| ||| |||||||| | ||| || || Sbjct: 49924 tgcataaactaaaccaacaattaagataagcacgaaaattaaagcttctacaaatacaga 49983 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||| ||||| || |||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 49984 tacacctaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 50043 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || ||||||||||||||||| |||| ||||||| |||||| | || Sbjct: 50044 aacaacaaaaactagagcaaacatataatagcggattctaaattgtaaccaagcgtcgcc 50103 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 || ||||||||||||||||||||||||||||| |||| | | ||| |||| ||| || Sbjct: 50104 tattggttctatacccgattcataactagaaagtttctccggtcctttgctaatcggagc 50163 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || ||||| ||||| |||||||||||||||| |||| ||| |||||||||| Sbjct: 50164 taaaaatcccgaaatgaaaaataccaaaataggaataagacttgatatgattagaaatgc 50223 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacata 348 |||||||||||||||||| ||||||||||||||| Sbjct: 50224 ccaaaaaatatcatattcataaagcagaaacata 50257
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 280 bits (141), Expect = 5e-72 Identities = 296/348 (85%), Gaps = 1/348 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| |||||||||| |||| |||| || |||| |||||| ||| |||||| Sbjct: 53474 gctccttttcgccatgcataaactgaaccaacaattaggataagcacgaaaatgaaagct 53533 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || || || |||| ||| |||||||| ||||||||||||||||| || || ||||| || Sbjct: 53534 tctatgaatacgggtacccccaatacatcgaaactcattgcccatggataaagaaaaacc 53593 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 53594 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgt 53653 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||||||||||||||||||||| || | || | Sbjct: 53654 aaccaagcatcgcccattggttctatacccgattcataactagaaagtttttctggaccc 53713 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||||||||||| || ||||| ||||||||||||||||||| |||| | Sbjct: 53714 tttctaatcggggctaaaactccagaaattagaaatgccaaaataggaatagcacttgat 53773 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 53774 attattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 53821
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 278 bits (140), Expect = 2e-71 Identities = 285/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || |||||| |||||| ||| |||||||| ||||| || || Sbjct: 51975 tgcataaactaaaccaataattaagatcagcacgaaaatgaaagcttctataaatacaga 52034 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 |||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 52035 tacacccaatacgtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 52094 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || |||| ||||||| |||||| | || Sbjct: 52095 aacaacaaaaactagagcaaacatataataacggattctaaattgtaaccaagcatcgcc 52154 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| ||||| Sbjct: 52155 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaattggggc 52214 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 52215 taacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaatgc 52274 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 52275 ccaaaaaaaatcatattcgtaaagcagaaacataa 52309
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 278 bits (140), Expect = 2e-71 Identities = 285/335 (85%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| | || ||||||| ||||| ||| |||||||| ||||| || || Sbjct: 51508 tgcataaactaaaccaataattaagataaccacgaaaatgaaagcttctataaatacaga 51567 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 ||||||||||| |||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 51568 tacacccaataggtcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 51627 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| | |||||||||||||| || ||||| ||||||| |||||| | || Sbjct: 51628 aacaacaaaaactacagcaaacatataataacggattcgaaattgtaaccaagcatcgcc 51687 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||||||||| |||||| ||||||| |||| | ||| |||| |||||| Sbjct: 51688 cattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggggc 51747 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||| | || ||||| |||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 51748 taacactccggaaatgaaaaatgccaaaataggaagaaggattgatattattagaaatgc 51807 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| |||||||||||||||||||||||||| Sbjct: 51808 ccaaaaaaaatcatattcgtaaagcagaaacataa 51842
>gb|U27653.1|LLU27653 Lupinus luteus NADH-plastoquinone oxidoreductase (ndhC) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 363 Score = 274 bits (138), Expect = 3e-70 Identities = 283/333 (84%) Strand = Plus / Minus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| || |||| |||||| |||||||||||| ||||| ||||| Sbjct: 333 tgcataaactaaaccaacaattaggataagcacgaaaatcaaagcttctataaatacgga 274 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 ||| |||||||| ||||||||||||||||| || || ||||| || ||||| |||||||| Sbjct: 273 tacccccaatacatcgaaactcattgcccatggataaagaaaaaccgtttcaacatcaaa 214 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || |||| ||||||| |||||| | || Sbjct: 213 aacaacaaaaactagagcaaacatataataacggattctaaattgtaaccaagcatcgcc 154 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||| |||||||||||||| || || |||| || | | | |||| ||||| Sbjct: 153 cattggttctattcccgattcataactcgagagtttctctggtcccttgctaattggggc 94 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || ||||| ||||||| ||||| ||||||||||| | ||||||||||||| Sbjct: 93 taaaattccagaaattaaaaatgctaaaatcggaataaggctcgagattattagaaatgc 34 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacat 347 |||||||||||||||||||||||||| |||||| Sbjct: 33 ccaaaaaatatcatattcgtaaagcaaaaacat 1
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 272 bits (137), Expect = 1e-69 Identities = 295/348 (84%), Gaps = 1/348 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| ||||||||||||||| |||| || |||| |||||| ||| |||||| Sbjct: 48998 gctccttttcgccatgcataaactaaaccaacaattaggataagcacgaaaattaaagct 49057 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || ||||| |||||||||||||||| ||||||||||||||||| || || ||||| || Sbjct: 49058 tctataaatacggatacacccaatatatcgaaactcattgcccatggataaagaaaaacc 49117 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || ||||| |||||| Sbjct: 49118 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattcgaaattgt 49177 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttctntgntnct 240 | |||||| | ||||| ||||||||||||||||| ||||||||||| |||| | | || Sbjct: 49178 aaccaagcatcccccataggttctatacccgattcgtaactagaaagtttctcgggtcct 49237 Query: 241 tcactaaccggggctaaaagccctgaaatcgaaaatgccaaaataggaataaggcttgct 300 | |||| ||| ||||||| || |||| |||||| ||||||||||||| |||| | Sbjct: 49238 ttgctaatcggtgctaaaattccggaaaatagaaatgctaaaataggaataacacttgat 49297 Query: 301 attattagaaatgtccaaaaaatatcatattcgtaaagcagaaacata 348 ||||||| ||||| ||| |||||||||||||| ||||| ||||||||| Sbjct: 49298 attattaaaaatgcccagaaaatatcatattcataaagtagaaacata 49345
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 268 bits (135), Expect = 2e-68 Identities = 299/354 (84%), Gaps = 1/354 (0%) Strand = Plus / Plus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| || |||| | |||| || |||||||| ||||| ||||| Sbjct: 113165 tgcataaactaaaccaacaattaggataaggacgaagatgaaagcttctataaatacgga 113224 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 ||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 113225 tacccccaatacatcaaaactcattgcccatgggtaaagaaagactgtttcaacatcaaa 113284 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||| | ||||||| |||||| | || Sbjct: 113285 aacaacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcc 113344 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||| || ||||||||||||||||| || | || ||| |||| || || Sbjct: 113345 catcggttctatcccagattcataactagaaagtttttctggcccttttctaattggagc 113404 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || |||||| |||||||||||||||||||| | | | ||||||||||||||| Sbjct: 113405 taaaattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgt 113464 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 367 |||||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 113465 ccaaaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 113518
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 252 bits (127), Expect = 1e-63 Identities = 297/354 (83%), Gaps = 1/354 (0%) Strand = Plus / Minus Query: 15 tgcataaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacgga 74 ||||||||||||||| |||| || |||| | |||| || |||||||| ||||| ||||| Sbjct: 83488 tgcataaactaaaccaacaattaggataaggacgaagatgaaagcttctataaatacgga 83429 Query: 75 tacacccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaa 134 ||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |||||||| Sbjct: 83428 tacccccaatacatcaaaactcattgcccatgggtaaagaaagactgtttcaacatcaaa 83369 Query: 135 aacaacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcc 194 |||||||||||| || |||||||||||||| || ||| | ||||||| |||||| | || Sbjct: 83368 aacaacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcc 83309 Query: 195 catgggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggc 254 ||| |||||||| | ||||||||||| ||||| || | || ||| |||| || || Sbjct: 83308 catcggttctatcctagattcataacttgaaagtttttctggcccttttctaattggagc 83249 Query: 255 taaaagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgt 314 ||||| || |||||| |||||||||||||||||||| | | | ||||||||||||||| Sbjct: 83248 taaaattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgt 83189 Query: 315 ccaaaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 367 |||||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 83188 ccaaaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 83135
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 238 bits (120), Expect = 2e-59 Identities = 277/331 (83%) Strand = Plus / Minus Query: 19 taaactaaaccgacaactaagatangcacganaatcaaagcttcgataaaaacggataca 78 |||||| |||| |||| || |||| |||| | ||||||||||| ||||| ||||||| Sbjct: 11027 taaactgaaccaacaattaggataagcacaaagatcaaagcttctataaatacggatatc 10968 Query: 79 cccaatacgtcgaaactcattgcccaagggtatagaaagacggtttccacatcaaaaaca 138 |||||||| || |||||||||||||| || || ||||| || ||||| |||||||||||| Sbjct: 10967 cccaatacatcaaaactcattgcccatggataaagaaaaaccgtttcaacatcaaaaaca 10908 Query: 139 acaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccatg 198 |||||||| || |||||||||||||| || ||| | ||||||| |||||| ||||||| Sbjct: 10907 acaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatctcccatt 10848 Query: 199 ggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaaa 258 |||||||| |||||||||||||||||||| |||| || ||| ||| |||||| ||| Sbjct: 10847 ggttctattcccgattcataactagaaagtttctctggccctttgttaatcggggccaaa 10788 Query: 259 agccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtccaa 318 | || ||||| | |||||||||||| ||||||| | | | |||||||||||||| |||| Sbjct: 10787 aagccagaaattgtaaatgccaaaatcggaataaagatcgatattattagaaatgcccaa 10728 Query: 319 aaaatatcatattcgtaaagcagaaacataa 349 |||||||||||||| ||||||| |||||||| Sbjct: 10727 aaaatatcatattcataaagcaaaaacataa 10697
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 194 bits (98), Expect = 2e-46 Identities = 199/232 (85%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| ||||||||||||||| | || || |||| |||||| ||| |||||| Sbjct: 49079 gctccttttcgccatgcataaactaaaccaagaattaggataagcacgaaaatgaaagct 49138 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || |||||| ||||||| || | ||| ||||||||||||||||| || || ||||| ||| Sbjct: 49139 tctataaaagcggatacccctagtacatcgaaactcattgcccacggatacagaaaaacg 49198 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||| Sbjct: 49199 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgt 49258 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttct 232 | |||||| | || || ||||||||||| ||||||||||||||||| |||| Sbjct: 49259 aaccaagcatccccgatcggttctatacctgattcataactagaaagtttct 49310 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 273 aaatgccaaaataggaataaggcttgctattattagaaatgtccaaaaaatatcatattc 332 ||||||||||| ||||||| |||| |||||||| ||||| ||| |||||||||||||| Sbjct: 49351 aaatgccaaaacaggaatagcacttgatattattaaaaatgcccagaaaatatcatattc 49410 Query: 333 gtaaagcagaaacata 348 |||||||||||||||| Sbjct: 49411 gtaaagcagaaacata 49426
>gb|M12704.1|MZECPPS2G Maize chloroplast psbG gene encoding PSII-G protein, complete cds Length = 1027 Score = 188 bits (95), Expect = 1e-44 Identities = 138/149 (92%), Gaps = 3/149 (2%) Strand = Plus / Minus Query: 1 ggctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagc 59 |||||||||||||| ||||||||||||||| ||||||| |||| |||| | ||| ||||| Sbjct: 153 ggctccttttcgccatgcataaactaaaccaacaactaggataagcacaaaaatgaaagc 94 Query: 60 ttc-gataaaaacggatacacccaatacgtc-gaaactcattgcccaagggtatagaaag 117 ||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 93 ttccgataaaaacggatacacccaatacgtcagaaactcattgcccaagggtagagaaag 34 Query: 118 acggtttccacatcaaaaacaacaaaaac 146 || |||||||||||||||||||||||||| Sbjct: 33 actgtttccacatcaaaaacaacaaaaac 5
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 186 bits (94), Expect = 6e-44 Identities = 198/232 (85%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 2 gctccttttcgcc-tgcataaactaaaccgacaactaagatangcacganaatcaaagct 60 ||||||||||||| ||||||||||||||| | || || |||| |||||| ||| |||||| Sbjct: 50017 gctccttttcgccatgcataaactaaaccaagaattaggataagcacgaaaatgaaagct 50076 Query: 61 tcgataaaaacggatacacccaatacgtcgaaactcattgcccaagggtatagaaagacg 120 || |||||| | ||||| |||| ||| ||||||||||||||||| || || ||||| || Sbjct: 50077 tctataaaagcagatacccccagtacatcgaaactcattgcccacggatacagaaaaaca 50136 Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||||||||||||| || |||||||||||||| || |||| |||||| Sbjct: 50137 gtttcaacatcaaaaacaacaaaaactagagcaaacatataataacggattctaaattgt 50196 Query: 181 acccaagcccctcccatgggttctatacccgattcataactagaaagcttct 232 | |||||| | || || ||||||||||| ||||||||||||||||| |||| Sbjct: 50197 aaccaagcatccccgatcggttctatacctgattcataactagaaagtttct 50248 Score = 79.8 bits (40), Expect = 1e-11 Identities = 67/76 (88%) Strand = Plus / Plus Query: 273 aaatgccaaaataggaataaggcttgctattattagaaatgtccaaaaaatatcatattc 332 ||||||||||| ||||||| |||| ||||| || ||||| ||| |||||||||||||| Sbjct: 50289 aaatgccaaaacaggaatagcacttgatattagtaaaaatgcccagaaaatatcatattc 50348 Query: 333 gtaaagcagaaacata 348 |||||||||||||||| Sbjct: 50349 gtaaagcagaaacata 50364
>emb|CT010572.8| M.truncatula DNA sequence from clone MTH2-161L21 on chromosome 3, complete sequence Length = 121331 Score = 155 bits (78), Expect = 2e-34 Identities = 193/231 (83%), Gaps = 1/231 (0%) Strand = Plus / Minus Query: 138 aacaaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccat 197 ||||||||| || |||||||||||||| || ||| | ||||||| |||||| | ||||| Sbjct: 101182 aacaaaaactagagcaaacatataataacggatttgaaattgtaaccaagcatcgcccat 101123 Query: 198 gggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaa 257 |||||||| || ||||||||||||||||| || | || ||| |||| || ||||| Sbjct: 101122 cggttctatcccagattcataactagaaagtttttctggcccttttctaattggagctaa 101063 Query: 258 aagccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtcca 317 || || |||||| |||||||||||||||||||| | | | |||||||||||||||||| Sbjct: 101062 aattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgtcca 101003 Query: 318 aaaaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 367 ||||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 101002 aaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 100952
>emb|CT863710.2| Medicago truncatula chromosome 5 clone mth2-52h19, COMPLETE SEQUENCE Length = 118754 Score = 119 bits (60), Expect = 1e-23 Identities = 142/169 (84%), Gaps = 1/169 (0%) Strand = Plus / Minus Query: 200 gttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaaaa 259 ||||||| || ||||||||||||||||| || | || ||| |||| || ||||||| Sbjct: 114622 gttctatcccagattcataactagaaagtttttctggcccttttctaattggagctaaaa 114563 Query: 260 gccctgaaatcgaaaatgccaaaataggaataaggcttgctattattagaaatgtccaaa 319 || |||||| |||||||||||||||||||| | | | |||||||||||||||||||| Sbjct: 114562 ttccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgtccaaa 114503 Query: 320 aaatatcatattcgtaaagcagaaacat-aatgtactcccattaatgtg 367 ||||||||||||| ||||||| |||||| |||||||||| || |||||| Sbjct: 114502 aaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 114454
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 97.6 bits (49), Expect = 4e-17 Identities = 112/133 (84%) Strand = Plus / Minus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| ||||| || |||| ||| || ||||| |||||||||| ||||||||| | | Sbjct: 29693 aaactcatggcccatggatataaaaaaactgtttctacatcaaaaataacaaaaactaac 29634 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 || |||||||||||||| ||| ||||||| | |||||| | ||||| |||||||| || Sbjct: 29633 gcgaacatataatagcgaatttggaattgaatccaagcatcacccattggttctattcct 29574 Query: 211 gattcataactag 223 ||||||||||||| Sbjct: 29573 gattcataactag 29561 Score = 42.1 bits (21), Expect = 2.1 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 2 gctccttttcgcc-tgcataaactaaacc 29 ||||||||||||| ||||||||||||||| Sbjct: 29783 gctccttttcgccatgcataaactaaacc 29755
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/62 (91%) Strand = Plus / Minus Query: 198 gggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaa 257 ||||||||||||||||||||||||||||||||||| || | |||||| |||||| ||||| Sbjct: 35298991 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 35298932 Query: 258 aa 259 || Sbjct: 35298931 aa 35298930
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/62 (91%) Strand = Plus / Minus Query: 198 gggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaa 257 ||||||||||||||||||||||||||||||||||| || | |||||| |||||| ||||| Sbjct: 35389063 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 35389004 Query: 258 aa 259 || Sbjct: 35389003 aa 35389002
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/62 (91%) Strand = Plus / Plus Query: 198 gggttctatacccgattcataactagaaagcttctntgntncttcactaaccggggctaa 257 ||||||||||||||||||||||||||||||||||| || | |||||| |||||| ||||| Sbjct: 69463 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccggagctaa 69522 Query: 258 aa 259 || Sbjct: 69523 aa 69524
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| |||||||| || ||||| || ||||| |||||||||| |||||||| | Sbjct: 52621 aaactcatagcccaaggataaagaaaaactgtttctacatcaaaaattacaaaaactaaa 52680 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 |||||||||||||| || ||| | ||||| | ||||| ||||||| ||||||||||| Sbjct: 52681 gcaaacatataatatcgaatttgaaattgaatacaagcttctcccatcggttctatacct 52740 Query: 211 gattcataact 221 ||||||||||| Sbjct: 52741 gattcataact 52751
>dbj|AB087446.1| Anthoceros formosae chloroplast ndhK, ndhC mRNA for NADH dehydrogenase 27 kDa subunit, NADH dehydrogenase ND3 subunit, partial and complete cds Length = 443 Score = 81.8 bits (41), Expect = 2e-12 Identities = 110/133 (82%) Strand = Plus / Plus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| ||||| || || ||||| || ||||| |||||||||| ||| ||||| | Sbjct: 185 aaactcatagcccatggatagagaaaaacagtttcaacatcaaaaataacgaaaactaaa 244 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 |||||||||||||| || ||| | ||||| | |||||| ||||||| ||||||||||| Sbjct: 245 gcaaacatataataacgaatttgaaattgaatccaagcatctcccataggttctatacca 304 Query: 211 gattcataactag 223 |||||||||||| Sbjct: 305 cattcataactag 317
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 77.8 bits (39), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Plus Query: 412 atttatccagaacttctctcttttcctnggngaaacaagaatcttttttgttcaaac 468 |||| |||||||||||||||||||||| || ||||||||||||| ||||| |||||| Sbjct: 486770 atttctccagaacttctctcttttcctcggtgaaacaagaatctcttttgctcaaac 486826 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 394098 tgggttctatacccgattca 394117
>gb|AC155886.2| Medicago truncatula chromosome 7 BAC clone mth2-173o24, complete sequence Length = 119696 Score = 75.8 bits (38), Expect = 2e-10 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 273 aaatgccaaaataggaataaggcttgctattattagaaatgtccaaaaaatatcatattc 332 |||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| Sbjct: 37643 aaatgccaaaatagcaataacaattgatattattagaaatacccaaaaaatatcatattt 37584 Query: 333 gtaaagcagaaacat-aatgtactcc 357 |||||| | |||||| |||||||||| Sbjct: 37583 gtaaagaaaaaacataaatgtactcc 37558
>gb|U72654.1|EGU72654 Eustoma grandiflorum flavonoid 3'5'-hydroxylase (F3'5'H) mRNA, complete cds Length = 2124 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 2032 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1985
>dbj|D14589.1| Eustoma russellianum mRNA for flavonoid 3',5'-hydroxylase, complete cds Length = 2174 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacat 347 ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 2029 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1982 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 199 ggttctatacccgattcataactaga 224 |||||||| ||||||||||||||||| Sbjct: 2130 ggttctatccccgattcataactaga 2105
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 94 ctcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgca 153 ||||| ||||| ||||| || || || ||||| || ||||| |||||||| || | ||| Sbjct: 108886 ctcatagcccatgggtaaaggaatacagtttctacgtcaaatacaacaaacactaaggca 108945 Query: 154 aacatataatagcgtattcggaattgtacccaagcccctcccatgggttctatacccgat 213 ||||||||||| || ||| ||||||||| ||||| | ||||| ||||||||||| || Sbjct: 108946 aacatataataacgaatttggaattgtatccaagattcgcccataggttctatacctgac 109005 Query: 214 tcataactag 223 |||||||||| Sbjct: 109006 tcataactag 109015
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 65.9 bits (33), Expect = 1e-07 Identities = 108/133 (81%) Strand = Plus / Plus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| ||||| || || ||| | || ||||| |||||||||| ||| ||||| | Sbjct: 68028 aaactcatagcccatggatagagagaaacagtttcaacatcaaaaataacgaaaactaaa 68087 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 |||||||||||||| || ||| ||||| | |||||| ||||||| ||||||||||| Sbjct: 68088 gcaaacatataataacgaatttaaaattggatccaagcatctcccataggttctatacca 68147 Query: 211 gattcataactag 223 |||||||||||| Sbjct: 68148 cattcataactag 68160
>dbj|D43695.1|APNCPRBCLA Anthoceros formosae chloroplast DNA for ndhK, atpB, accD, partial cds, and ndhC, atpE, rbcL, complete cds Length = 7556 Score = 65.9 bits (33), Expect = 1e-07 Identities = 108/133 (81%) Strand = Plus / Plus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| ||||| || || ||| | || ||||| |||||||||| ||| ||||| | Sbjct: 339 aaactcatagcccatggatagagagaaacagtttcaacatcaaaaataacgaaaactaaa 398 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 |||||||||||||| || ||| ||||| | |||||| ||||||| ||||||||||| Sbjct: 399 gcaaacatataataacgaatttaaaattgaatccaagcatctcccataggttctatacca 458 Query: 211 gattcataactag 223 |||||||||||| Sbjct: 459 cattcataactag 471
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 63.9 bits (32), Expect = 6e-07 Identities = 98/120 (81%) Strand = Plus / Plus Query: 99 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 158 |||||| || || ||||| || ||||| |||||||||| ||| ||||| || |||||||| Sbjct: 316694 tgcccatggataaagaaatactgtttcaacatcaaaaataacgaaaactagggcaaacat 316753 Query: 159 ataatagcgtattcggaattgtacccaagcccctcccatgggttctatacccgattcata 218 |||||||| || ||||| | |||||||||||| |||||||| || || |||||||| Sbjct: 316754 gtaatagcgaatattaaattgaatccaagcccctccaatgggttccatcccagattcata 316813
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 141 aaaaacgagcgcaaacatataatagcgtattcggaattgtacccaagcccctcccatggg 200 |||||| || |||||||| ||||||| |||||||||| ||||||||| | ||||| || Sbjct: 51110 aaaaactagagcaaacatttaatagcaaattcggaattttacccaagcatcccccattgg 51169 Query: 201 ttctatacccgattcataactag 223 ||| |||| ||||||||||||| Sbjct: 51170 ctctctacctgattcataactag 51192 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 300 tattattagaaatgtccaaaaaatatcatattcgtaaagcagaaacataa 349 |||||||| ||||| ||| |||| ||||||||||| || ||||||||||| Sbjct: 51264 tattattataaatgcccagaaaagatcatattcgtgaaacagaaacataa 51313
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 |||||||||||||| || || ||||||| | |||||| |||| |||||||||||||| Sbjct: 37855 gcaaacatataataacgaatctggaattggatccaagcgtctccaatgggttctatacct 37796 Query: 211 gattcata 218 |||||||| Sbjct: 37795 gattcata 37788
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 54.0 bits (27), Expect = 6e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||| |||||||| | |||||||||||||| || ||| |||| ||| Sbjct: 37563 gtttctacatcaaaaatcacaaaaactaaagcaaacatataataacgaatttggaactgt 37622 Query: 181 acccaagcccctcccatgggttctatacccgattcataa 219 | ||||| ||||||| ||||| || || ||||||||| Sbjct: 37623 atccaagattctcccattggttcaattcctgattcataa 37661
>gb|AF137379.1| Nephroselmis olivacea chloroplast DNA, complete genome Length = 200799 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 99 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 158 ||||||||| |||||||| | ||||| |||||||| |||||||| || || |||||||| Sbjct: 59941 tgcccaaggatatagaaacaaagtttcgacatcaaatacaacaaatactagtgcaaacat 60000 Query: 159 ata 161 ||| Sbjct: 60001 ata 60003
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 54.0 bits (27), Expect = 6e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 91 aaactcattgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagc 150 |||||||| ||||| || || ||||| || ||||| |||||||||| ||| ||||| | Sbjct: 51896 aaactcatagcccatggataaagaaaaaccgtttcaacatcaaaaataacgaaaactaaa 51955 Query: 151 gcaaacatataatagcgtattcggaattgtacccaagcccctcccatgggttctataccc 210 ||||| |||| || || || | ||||||| |||||| | ||||| ||||||||||| Sbjct: 51956 gcaaagctatagtaacggatctgaaattgtatccaagcatcccccattggttctatacct 52015 Query: 211 gattcataact 221 ||||||||||| Sbjct: 52016 gattcataact 52026
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 46.1 bits (23), Expect = 0.14 Identities = 80/99 (80%) Strand = Plus / Plus Query: 121 gtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgt 180 ||||| |||||||||| ||||||| | |||||||||||||| ||||| |||||| Sbjct: 58063 gtttctacatcaaaaattacaaaaattaaagcaaacatataataacgtatgttgaattgg 58122 Query: 181 acccaagcccctcccatgggttctatacccgattcataa 219 |||||||| | ||||| ||||| || || ||||||||| Sbjct: 58123 acccaagcttcacccattggttcaattcctgattcataa 58161
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 46.1 bits (23), Expect = 0.14 Identities = 47/55 (85%) Strand = Plus / Minus Query: 127 acatcaaaaacaacaaaaacgagcgcaaacatataatagcgtattcggaattgta 181 |||||||||| |||||||| || |||||||||||||| || ||| | ||||||| Sbjct: 58525 acatcaaaaataacaaaaaatagagcaaacatataataacggatttgaaattgta 58471
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 443617 tagcgtattcggaattgtaaccaagc 443642 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 362504 tagcgtattcggaattgtaaccaagc 362529 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 443543 aaacggaaacgcccaatacatcgaaactcattaccca 443579 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 362430 aaacggaaacgcccaatacatcgaaactcattaccca 362466
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 442775 tagcgtattcggaattgtaaccaagc 442800 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 361677 tagcgtattcggaattgtaaccaagc 361702 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442701 aaacggaaacgcccaatacatcgaaactcattaccca 442737 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361603 aaacggaaacgcccaatacatcgaaactcattaccca 361639
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 442771 tagcgtattcggaattgtaaccaagc 442796 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 361673 tagcgtattcggaattgtaaccaagc 361698 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442697 aaacggaaacgcccaatacatcgaaactcattaccca 442733 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361599 aaacggaaacgcccaatacatcgaaactcattaccca 361635
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Minus Query: 114 aaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 167 |||||| || ||||||||||||| ||||| ||||| |||||||| || ||||| Sbjct: 1491650 aaagaccgtctccacatcaaaaatgacaaagacgagggcaaacatgtagtagcg 1491597
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 44.1 bits (22), Expect = 0.54 Identities = 34/38 (89%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaacgagcgcaaacatataata 164 |||||||||| ||||||||| | |||||||||||||| Sbjct: 47135 acatcaaaaataacaaaaactaaagcaaacatataata 47172
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 442628 tagcgtattcggaattgtaaccaagc 442653 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 163 tagcgtattcggaattgtacccaagc 188 ||||||||||||||||||| |||||| Sbjct: 361541 tagcgtattcggaattgtaaccaagc 361566 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 442554 aaacggaaacgcccaatacatcgaaactcattaccca 442590 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 361467 aaacggaaacgcccaatacatcgaaactcattaccca 361503
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 agaatcttttttgttcaaaca 469 ||||||||||||||||||||| Sbjct: 116091 agaatcttttttgttcaaaca 116111
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 42.1 bits (21), Expect = 2.1 Identities = 57/69 (82%) Strand = Plus / Minus Query: 99 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 158 ||||||||| |||| || || || ||||||||||| || ||||| || || |||||||| Sbjct: 2312630 tgcccaaggatataagaacacagtctccacatcaaagacgacaaagaccagggcaaacat 2312571 Query: 159 ataatagcg 167 ||| ||||| Sbjct: 2312570 atagtagcg 2312562
>emb|CR932579.1|CNS0KYB9 Paramecium tetraurelia, Small GTPase rab, putative, complete gene Length = 3001 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 550 ttttggatttccattctattt 570 ||||||||||||||||||||| Sbjct: 1847 ttttggatttccattctattt 1827
>gb|AY120853.2| Synechococcus sp. PCC 7942 processing protease-like protein gene, partial cds; phycocyanobilin:ferredoxin oxidoreductase-like protein, DevB (devB), DevC (devC), tRNA pseudoridine 55 synthase, CheY (cheY), 50S ribosomal protein L27, 50S ribosomal protein L21, KaiA (kaiA), KaiB (kaiB), KaiC (kaiC), glutathione peroxidase, virulence associated protein C, rRNA methylase-like protein, PhdD (phdD), indole-3-glycerol phosphate synthase-like protein, PdxJ (pdxJ), KguA (kguA), AmpA (ampA), MobA (mobA), transferrin variant A-like protein, 6-pyruvoyl-tetrahydropterin synthase-like protein, NugC (nugC), NdhK (ndhK), Nu3C (nu3C), RubR (rubR), PsbE (psbE), PsbF (psbF), PsbL (psbL), PsbJ (psbJ), apolipoprotein N-acyltransferase-like protein, unknown protein, IspF (ispF), Ap-4-A phosphorylase II-like protein, PanC (panC), Kcy (kcy), and dTDP-glucose 4-6-dehydratase-like protein genes, complete cds; and unknown genes Length = 74355 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 115 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 167 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 35711 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 35763
>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold Length = 574594 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 591 taattcttatataaagaaaac 611 ||||||||||||||||||||| Sbjct: 345781 taattcttatataaagaaaac 345801
>emb|AJ884786.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1-d Length = 769 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 caatttatccagaacttctct 430 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>emb|AJ884784.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1b Length = 752 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 caatttatccagaacttctct 430 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence Length = 121763 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 596 cttatataaagaaaactttat 616 ||||||||||||||||||||| Sbjct: 48652 cttatataaagaaaactttat 48672
>emb|AJ012181.1|AVA012181 Anabaena variabilis hoxR gene and ndhCKJ gene cluster Length = 3020 Score = 42.1 bits (21), Expect = 2.1 Identities = 57/69 (82%) Strand = Plus / Minus Query: 99 tgcccaagggtatagaaagacggtttccacatcaaaaacaacaaaaacgagcgcaaacat 158 ||||||||| |||| || || || ||||||||||| || ||||| || || |||||||| Sbjct: 1347 tgcccaaggatataagaacacagtctccacatcaaagacgacaaagaccagggcaaacat 1288 Query: 159 ataatagcg 167 ||| ||||| Sbjct: 1287 atagtagcg 1279
>emb|BX908805.1| Human DNA sequence from clone RP11-526F14 on chromosome 1 Contains part of the DPYD gene for dihydropyrimidine dehydrogenase and the 3' end of a novel gene, complete sequence Length = 59492 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 411 aatttatccagaacttctctctttt 435 |||||||||||||||||||| |||| Sbjct: 51481 aatttatccagaacttctctttttt 51457
>emb|AL512385.10| Human DNA sequence from clone RP11-252E3 on chromosome 6 Contains part of the gene KIAA0319 and a keratin 8 (KRT8) pseudogene, complete sequence Length = 28692 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 tagtcaattcaattcagcatt 407 ||||||||||||||||||||| Sbjct: 11478 tagtcaattcaattcagcatt 11498
>emb|CR942205.4| Human DNA sequence from clone RP11-948M1 on chromosome 6, complete sequence Length = 176819 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 tagtcaattcaattcagcatt 407 ||||||||||||||||||||| Sbjct: 93954 tagtcaattcaattcagcatt 93934
>emb|CR925830.3| Human DNA sequence from clone RP11-195J19 on chromosome 6, complete sequence Length = 167847 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 tagtcaattcaattcagcatt 407 ||||||||||||||||||||| Sbjct: 99979 tagtcaattcaattcagcatt 99959
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 115 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 167 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 408832 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 408884
>gb|AC021393.10| Homo sapiens chromosome 8, clone RP11-27P7, complete sequence Length = 150858 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 302 ttattagaaatgtccaaaaaatatcatat 330 ||||||| |||||||| |||||||||||| Sbjct: 30476 ttattagtaatgtccataaaatatcatat 30448
>gb|BC068355.1| Danio rerio zgc:85677, mRNA (cDNA clone MGC:85677 IMAGE:6961081), complete cds Length = 2201 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 cacatcaaaaacaacaaaaac 146 ||||||||||||||||||||| Sbjct: 1550 cacatcaaaaacaacaaaaac 1530
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaacg 147 ||||||||||||||||||||| Sbjct: 5414380 acatcaaaaacaacaaaaacg 5414400 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaacg 147 ||||||||||||||||||||| Sbjct: 5414354 acatcaaaaacaacaaaaacg 5414374 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaacg 147 ||||||||||||||||||||| Sbjct: 5414328 acatcaaaaacaacaaaaacg 5414348 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 catcaaaaacaacaaaaacg 147 |||||||||||||||||||| Sbjct: 5414580 catcaaaaacaacaaaaacg 5414599
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 agaatcttttttgttcaaaca 469 ||||||||||||||||||||| Sbjct: 1160480 agaatcttttttgttcaaaca 1160500
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 78261 aaacggaaacgcccaatacatcgaaactcattaccca 78297
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 tttccacatcaaaaacaacaa 142 ||||||||||||||||||||| Sbjct: 4865735 tttccacatcaaaaacaacaa 4865755
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 436 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 148763 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 148711
>emb|AL731786.3|CNS08C8A Oryza sativa chromosome 12, . BAC OSJNBa0010J13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146055 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 384 aattagtcaattcaattcagcattgtcaatttatccagaacttctctcttttc 436 ||||| ||||||||| ||| || ||||||||||| || || |||| ||||||| Sbjct: 60359 aattaatcaattcaagtcaacactgtcaatttatacataagttctatcttttc 60307
>emb|AL513424.3|HS109M15 Homo sapiens chromosome 9 BAC RP11-109M15, complete sequence Length = 184365 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 attcagcattgtcaatttatc 418 ||||||||||||||||||||| Sbjct: 126091 attcagcattgtcaatttatc 126071
>dbj|AP004526.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT05E07, TM0055, complete sequence Length = 94516 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 gctgcatcttctttaaagatt 522 ||||||||||||||||||||| Sbjct: 14531 gctgcatcttctttaaagatt 14551
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 449 agaatcttttttgttcaaaca 469 ||||||||||||||||||||| Sbjct: 10766 agaatcttttttgttcaaaca 10786
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 115 aagacggtttccacatcaaaaacaacaaaaacgagcgcaaacatataatagcg 167 ||||||||||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 1211974 aagacggtttctacatcaaagatcacgaatacgagcgcaaacatgtagtagcg 1211922
>dbj|D13112.1|RICMT16 Oryza sativa (japonica cultivar-group) mitochondrial gene for tRNAs, complete sequences Length = 4894 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 68 aaacggatacacccaatacgtcgaaactcattgccca 104 ||||||| || |||||||| |||||||||||| |||| Sbjct: 4758 aaacggaaacgcccaatacatcgaaactcattaccca 4794
>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome Length = 569630 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 101322 tgggttctatacccgattca 101341
>gb|DQ205647.1| Eimeria tenella calmodulin-like domain protein kinase isoform 2 mRNA, complete cds Length = 2187 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cttcgataaaaacggataca 78 |||||||||||||||||||| Sbjct: 1710 cttcgataaaaacggataca 1729
>gb|AC124323.10| Mus musculus chromosome 19, clone RP24-444B6, complete sequence Length = 150803 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 aagaatcttttttgttcaaa 467 |||||||||||||||||||| Sbjct: 61745 aagaatcttttttgttcaaa 61726
>gb|AC102999.7| Rattus norvegicus 7 BAC CH230-33J22 (Children's Hospital Oakland Research Institute) complete sequence Length = 209654 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 tttagcctttgtttcctctgtgct 504 ||||||||||||||||| |||||| Sbjct: 143408 tttagcctttgtttcctgtgtgct 143431
>gb|AC140351.2| Mus musculus BAC clone RP24-258E8 from chromosome 8, complete sequence Length = 167073 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaac 146 |||||||||||||||||||| Sbjct: 150873 acatcaaaaacaacaaaaac 150892
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 181830 aaatgtccaaaaaatatcttattc 181807
>gb|AY312507.1| Thelohania solenopsae isolate LA 2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 318 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 165 taattcttatataaagaaaa 146
>gb|AY312506.1| Thelohania solenopsae isolate Florida small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 339 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 176 taattcttatataaagaaaa 157
>gb|AY312505.1| Thelohania solenopsae isolate Texas 3430 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 317 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 158 taattcttatataaagaaaa 139
>gb|AY312504.1| Thelohania solenopsae isolate Texas 3427 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 330 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 175 taattcttatataaagaaaa 156
>gb|AY312503.1| Thelohania solenopsae isolate Texas 3344 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 283 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 151 taattcttatataaagaaaa 132
>gb|AY312502.1| Thelohania solenopsae isolate Texas 3362 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence Length = 1726 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 591 taattcttatataaagaaaa 610 |||||||||||||||||||| Sbjct: 1255 taattcttatataaagaaaa 1236
>ref|XM_716710.1| Candida albicans SC5314 putative U3 snoRNP protein Utp20p fragment (CaO19_1732), mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 aacttaaattagtcaattca 397 |||||||||||||||||||| Sbjct: 1615 aacttaaattagtcaattca 1596
>ref|XM_716590.1| Candida albicans SC5314 putative U3 snoRNP protein Utp20p fragment (CaO19_9300), mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 aacttaaattagtcaattca 397 |||||||||||||||||||| Sbjct: 1615 aacttaaattagtcaattca 1596
>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete genome Length = 701046 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 356188 tgggttctatacccgattca 356169
>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome Length = 569553 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 139487 tgggttctatacccgattca 139506
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 159027 aaatgtccaaaaaatatcttattc 159004
>gb|AC145616.2| Homo sapiens BAC clone RP11-1172A19 from UL, complete sequence Length = 172810 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 19997 aaatgtccaaaaaatatcttattc 20020
>gb|AF511566.1| Pennisetum glaucum mitochondrial gene sequence Length = 927 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 87 tgggttctatacccgattca 106
>gb|AC005550.1| Homo sapiens PAC clone RP4-620P6 from 7, complete sequence Length = 133237 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttctttaaagattcatccaa 529 |||||||||||||||||||| Sbjct: 26941 ttctttaaagattcatccaa 26960
>gb|AC145547.3| Homo sapiens BAC clone RP11-1437O6 from UL, complete sequence Length = 185637 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 92547 aaatgtccaaaaaatatcttattc 92570
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 127308 aaatgtccaaaaaatatcttattc 127331
>gb|AC087428.3| Homo sapiens chromosome 3 clone RP11-18I13 map 3p, complete sequence Length = 149633 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 130846 aaatgtccaaaaaatatcttattc 130823
>emb|CR847884.6| Zebrafish DNA sequence from clone CH211-161H23 in linkage group 1, complete sequence Length = 157311 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 443 gaaacaagaatcttttttgttcaaacaa 470 ||||||| ||||||||||||||| |||| Sbjct: 74417 gaaacaaaaatcttttttgttcatacaa 74390
>emb|AL356099.15| Human DNA sequence from clone RP11-357A18 on chromosome 10, complete sequence Length = 163152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ttaaattagtcaattcaatt 400 |||||||||||||||||||| Sbjct: 100171 ttaaattagtcaattcaatt 100152
>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3 Contains the 5' end of the F13A1 gene for coagulation factor XIII A chain precursor, a SNAP19 (sRNA activating protein complex 19kDa subunit) pseudogene and two putative novel gene, complete sequence Length = 147038 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttctttaaagattcatccaa 529 |||||||||||||||||||| Sbjct: 67301 ttctttaaagattcatccaa 67320
>gb|AC053481.13| Homo sapiens chromosome 17, clone RP11-51L5, complete sequence Length = 176235 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 591 taattcttatataaagaaaacttt 614 |||| ||||||||||||||||||| Sbjct: 18979 taatacttatataaagaaaacttt 19002
>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 16919 cacatcaaaaacaacaaaaa 16900
>emb|CR381572.5| Human DNA sequence from clone bP-2168N6 on chromosome 21, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 126224 aaatgtccaaaaaatatcttattc 126247
>gb|AC026391.7| Homo sapiens chromosome 10 clone RP11-135D11, complete sequence Length = 177578 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ttaaattagtcaattcaatt 400 |||||||||||||||||||| Sbjct: 174066 ttaaattagtcaattcaatt 174085
>gb|AC160561.2| Mus musculus BAC clone RP23-102D22 from chromosome 12, complete sequence Length = 204231 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaac 146 |||||||||||||||||||| Sbjct: 65777 acatcaaaaacaacaaaaac 65796
>gb|AC012613.7| Homo sapiens chromosome 5 clone CTB-162I23, complete sequence Length = 164550 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 ttgtacccaagcccctcccatggg 200 |||| ||||||||||||||||||| Sbjct: 114434 ttgttcccaagcccctcccatggg 114457
>gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1) gene, complete cds Length = 178952 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ttctttaaagattcatccaa 529 |||||||||||||||||||| Sbjct: 31497 ttctttaaagattcatccaa 31478
>gb|AC158130.7| Mus musculus chromosome 19, clone RP24-360F11, complete sequence Length = 206879 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 aagaatcttttttgttcaaa 467 |||||||||||||||||||| Sbjct: 200185 aagaatcttttttgttcaaa 200166
>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence Length = 226696 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 63811 cacatcaaaaacaacaaaaa 63830
>emb|BX813561.1|CNS0ADQ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1409 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ttgctattattagaaatgtc 315 |||||||||||||||||||| Sbjct: 630 ttgctattattagaaatgtc 649
>emb|BX813717.1|CNS0ADTC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1323 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ttgctattattagaaatgtc 315 |||||||||||||||||||| Sbjct: 541 ttgctattattagaaatgtc 560
>emb|BX816565.1|CNS0AAP2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH56ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ttgctattattagaaatgtc 315 |||||||||||||||||||| Sbjct: 591 ttgctattattagaaatgtc 610
>gb|AC152168.2| Mus musculus BAC clone RP23-96H18 from chromosome 8, complete sequence Length = 219434 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 acatcaaaaacaacaaaaac 146 |||||||||||||||||||| Sbjct: 129047 acatcaaaaacaacaaaaac 129066
>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I, complete sequence Length = 133843 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ttgctattattagaaatgtc 315 |||||||||||||||||||| Sbjct: 47914 ttgctattattagaaatgtc 47895
>gb|AC138645.3| Homo sapiens chromosome 17, clone RP11-995C19, complete sequence Length = 200420 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 184483 cacatcaaaaacaacaaaaa 184464
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1029_F04 Length = 141834 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 aattagtcaattcaattcagcatt 407 ||||||||||||||| |||||||| Sbjct: 46140 aattagtcaattcaagtcagcatt 46163
>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence Length = 158617 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 78226 cacatcaaaaacaacaaaaa 78207
>gb|AC008026.7| Homo sapiens chromosome 17, clone RP11-464D20, complete sequence Length = 220184 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 591 taattcttatataaagaaaacttt 614 |||| ||||||||||||||||||| Sbjct: 177211 taatacttatataaagaaaacttt 177234
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence Length = 166978 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 15895 cacatcaaaaacaacaaaaa 15876
>emb|BX546448.4| Human DNA sequence from clone RP11-509J10 on chromosome 22, complete sequence Length = 172149 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 56533 aaatgtccaaaaaatatcttattc 56510
>dbj|AB159445.1| Bombyx mori DNA, chromosome 2, clone:544H24, complete sequence Length = 205107 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 ttaaattagtcaattcaatt 400 |||||||||||||||||||| Sbjct: 58142 ttaaattagtcaattcaatt 58161
>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15 Length = 83689 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 atacccgattcataactaga 224 |||||||||||||||||||| Sbjct: 60785 atacccgattcataactaga 60766
>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete sequence Length = 159320 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 49813 ttcttatataaagaaaactt 49794
>dbj|AP006195.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-278C16, complete sequence Length = 157800 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 128118 ttcttatataaagaaaactt 128099
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 212508 tgggttctatacccgattca 212489
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 aaatgtccaaaaaatatcatattc 332 |||||||||||||||||| ||||| Sbjct: 13043 aaatgtccaaaaaatatcttattc 13020
>emb|X69720.1|MITANAD9 T.aestivum mitochondrial nad9 gene for 30 kDa subunit of complex I NADH dehydrogenase Length = 935 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 tgggttctatacccgattca 216 |||||||||||||||||||| Sbjct: 87 tgggttctatacccgattca 106
>emb|AL359174.14| Human DNA sequence from clone RP11-423D17 on chromosome 6, complete sequence Length = 146372 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 6974 ttcttatataaagaaaactt 6955
>dbj|AB041992.1| Homo sapiens genomic DNA, chromosome 6q21, clone:576A9, complete sequence Length = 112519 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 83995 ttcttatataaagaaaactt 83976
>gb|AC092956.5| Homo sapiens 3 BAC RP11-648O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194510 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 cacatcaaaaacaacaaaaa 145 |||||||||||||||||||| Sbjct: 176269 cacatcaaaaacaacaaaaa 176288
>dbj|AP002529.1| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 284290 ttcttatataaagaaaactt 284271
>dbj|AB041512.1| Homo sapiens genomic DNA, chromosome 6q21, clone:520L4, complete sequence Length = 102910 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ttcttatataaagaaaactt 613 |||||||||||||||||||| Sbjct: 4280 ttcttatataaagaaaactt 4261 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,066,915 Number of Sequences: 3902068 Number of extensions: 7066915 Number of successful extensions: 163674 Number of sequences better than 10.0: 185 Number of HSP's better than 10.0 without gapping: 193 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162036 Number of HSP's gapped (non-prelim): 1486 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
