ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags16a18 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 124 bits (310), Expect = 3e-28 Identities = 61/133 (45%), Positives = 77/133 (57%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WWW Sbjct: 474 PFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWW 533 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++L Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593 Query: 291 FFVRHIYKSIKCE 253 F+R+IY ++K + Sbjct: 594 KFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 124 bits (310), Expect = 3e-28 Identities = 61/133 (45%), Positives = 77/133 (57%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WWW Sbjct: 474 PFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWW 533 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++L Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593 Query: 291 FFVRHIYKSIKCE 253 F+R+IY ++K + Sbjct: 594 KFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 124 bits (310), Expect = 3e-28 Identities = 61/133 (45%), Positives = 77/133 (57%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PFSAI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WWW Sbjct: 474 PFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWW 533 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RS L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++L Sbjct: 534 RSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSL 593 Query: 291 FFVRHIYKSIKCE 253 F+R+IY ++K + Sbjct: 594 KFIRYIYVNLKMD 606
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 117 bits (293), Expect = 3e-26 Identities = 58/130 (44%), Positives = 74/130 (56%) Frame = -2 Query: 642 AIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWWRSF 463 AI +ELYYIFA+VWG Y +ALTYFQL+ ED+ WWWRS Sbjct: 460 AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSV 519 Query: 462 LCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAALFFV 283 L GSTG F+ RS+MSG +QT FFGY Y FFLMLG + F ++L F+ Sbjct: 520 LSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFI 579 Query: 282 RHIYKSIKCE 253 R+IY ++K + Sbjct: 580 RYIYVNLKMD 589
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 102 bits (255), Expect = 8e-22 Identities = 45/133 (33%), Positives = 73/133 (54%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF A++IEL++IF+++W ++ Y + + YFQL AED+ WWW Sbjct: 493 PFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWW 552 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 R+FL G + F+V + D+ F+ + +FGY A + +F+L+ G +GF AA Sbjct: 553 RNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 612 Query: 291 FFVRHIYKSIKCE 253 FVR IY ++K + Sbjct: 613 MFVRKIYAAVKID 625
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 97.8 bits (242), Expect = 2e-20 Identities = 48/133 (36%), Positives = 67/133 (50%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF +I+IE+Y+IF S W ++IY + TYF L AED+ W W Sbjct: 455 PFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQW 514 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 SFL ST +V + ++ M G QTSF+FGYMA A +M G +G+ Sbjct: 515 TSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTS 574 Query: 291 FFVRHIYKSIKCE 253 FVR IY ++K + Sbjct: 575 AFVRKIYTNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 97.8 bits (242), Expect = 2e-20 Identities = 48/133 (36%), Positives = 67/133 (50%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF +I+IE+Y+IF S W ++IY + TYF L AED+ W W Sbjct: 457 PFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQW 516 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 SFL ST +V + ++ M G QTSF+FGYMA A +M G +G+ Sbjct: 517 TSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTS 576 Query: 291 FFVRHIYKSIKCE 253 FVR IY ++K + Sbjct: 577 AFVRKIYTNVKID 589
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 89.0 bits (219), Expect = 1e-17 Identities = 42/133 (31%), Positives = 63/133 (47%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF I+I+L++I S+W H++Y + L YF L AED+ W W Sbjct: 530 PFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQW 589 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 590 RSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACF 649 Query: 291 FFVRHIYKSIKCE 253 +FV IY +K + Sbjct: 650 WFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 89.0 bits (219), Expect = 1e-17 Identities = 42/133 (31%), Positives = 63/133 (47%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF I+I+L++I S+W H++Y + L YF L AED+ W W Sbjct: 531 PFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQW 590 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 591 RSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACF 650 Query: 291 FFVRHIYKSIKCE 253 +FV IY +K + Sbjct: 651 WFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 89.0 bits (219), Expect = 1e-17 Identities = 42/133 (31%), Positives = 63/133 (47%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF I+I+L++I S+W H++Y + L YF L AED+ W W Sbjct: 531 PFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQW 590 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 591 RSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACF 650 Query: 291 FFVRHIYKSIKCE 253 +FV IY +K + Sbjct: 651 WFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 89.0 bits (219), Expect = 1e-17 Identities = 42/133 (31%), Positives = 63/133 (47%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF I+I+L++I S+W H++Y + L YF L AED+ W W Sbjct: 531 PFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQW 590 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 RSFL G T + +++ ++G T +FGY + FFL G +GF A Sbjct: 591 RSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACF 650 Query: 291 FFVRHIYKSIKCE 253 +FV IY +K + Sbjct: 651 WFVTKIYSVVKVD 663
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 75.1 bits (183), Expect = 2e-13 Identities = 38/133 (28%), Positives = 64/133 (48%) Frame = -2 Query: 651 PFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXVALTYFQLAAEDHEWWW 472 PF +I +ELY+I+ S+W ++I+ + +TY L E+ +W W Sbjct: 536 PFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQW 595 Query: 471 RSFLCGGSTGFFVXXXXXXXXYARSDMSGFMQTSFFFGYMACICYAFFLMLGMVGFRAAL 292 R F+ GG+ G + + + + GF + GY + I L+ G +GF +++ Sbjct: 596 RGFIIGGA-GCALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSM 654 Query: 291 FFVRHIYKSIKCE 253 FVR IY SIK + Sbjct: 655 LFVRKIYSSIKVD 667
>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit| (Voltage-gated calcium channel alpha subunit Cav1.3) (CHCACHA1D) Length = 2190 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/73 (27%), Positives = 30/73 (41%) Frame = +3 Query: 267 TCICAEQRTRRHGSPPYPASGRMHSRCTPCTQRRKMSA*SQTYPIVHSSSTDSSHRRKIQ 446 TC ++ RR PP PAS R S C +R+ P H + H + Q Sbjct: 1927 TCYDTKRSPRRRLLPPTPASNRRSSFNFECLRRQSSQDDIPLSPNFHHRTALPLHLMQQQ 1986 Query: 447 LILRTGMTSTTTH 485 ++ G+ S+ H Sbjct: 1987 VMAVAGLDSSKAH 1999
>PDR2_NICPL (Q2PCF1) Pleiotropic drug resistance protein 2 (NpPDR2)| Length = 1461 Score = 25.4 bits (54), Expect(2) = 7.2 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 393 MSGFMQTS---FFFGYMACICYAFFLMLGMV 310 M G+ T+ F+F Y +C+ +F M GM+ Sbjct: 1308 MIGYQWTAVKFFYFYYFIFMCFTYFSMYGMM 1338 Score = 22.7 bits (47), Expect(2) = 7.2 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = -3 Query: 320 WVWWASVPPCSLFGTYTSR--SSVSKVLLEDEEQQAELYSFL 201 W +WAS +++G + S+ ++ L E ++ ++ FL Sbjct: 1379 WYYWASPVAWTIYGIFASQVGDRTDELELTGETEKIQVNEFL 1420
>NU4M_MARPO (P26848) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 111 GLISNMPISSSCFLLHARANLFYTGTS 191 GL+S MPI S+ FL AN+ GTS Sbjct: 369 GLVSTMPIFSTIFLFFTLANMSLPGTS 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,927,713 Number of Sequences: 219361 Number of extensions: 1653354 Number of successful extensions: 4104 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3954 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4091 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
