| Clone Name | rbags15l17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB057749.1| Oryza sativa (japonica cultivar-group) PPOX-I/Protox-I mRNA for protoporphyrinogen oxidase I, complete cds Length = 1923 Score = 291 bits (147), Expect = 1e-75 Identities = 348/415 (83%) Strand = Plus / Minus Query: 127 atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186 ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 1673 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 1614 Query: 187 cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246 | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || | Sbjct: 1613 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 1554 Query: 247 cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306 | || || ||| |||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct: 1553 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 1494 Query: 307 aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366 ||||||||||| ||||||||||| || | ||| || | | |||||||| ||||| Sbjct: 1493 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 1434 Query: 367 tagggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcgg 426 |||| ||||||| ||| || ||||| ||||| ||||| |||||||| | ||||| || | Sbjct: 1433 taggatttatcagcatcttcctgaggtcacggtcaactgcttctaccagctcactttcag 1374 Query: 427 tcttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttc 486 ||||||| || |||||||||||||||||||| || || ||||||||||||||||| |||| Sbjct: 1373 tcttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttc 1314 Query: 487 cagcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541 |||| ||||||||||| |||||||| || |||||||||||||| ||||||||||| Sbjct: 1313 cagctggagcacgatttggaaagagtgatgagctatatattgttcctaaagtctc 1259
>ref|NM_187739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1692 Score = 289 bits (146), Expect = 5e-75 Identities = 347/414 (83%) Strand = Plus / Minus Query: 128 tcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcacc 187 |||||||||||| |||||||||||| ||||||||| ||||||||||||||| || ||||| Sbjct: 1692 tcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcacc 1633 Query: 188 ctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgtc 247 || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || || Sbjct: 1632 ttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccatc 1573 Query: 248 gtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatcaa 307 || || ||| |||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct: 1572 ataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatgag 1513 Query: 308 aaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctct 367 ||||||||||| ||||||||||| || | ||| || | | |||||||| ||||| | Sbjct: 1512 gaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgcttt 1453 Query: 368 agggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcggt 427 ||| ||||||| ||| || ||||| ||||| ||||| |||||||| | ||||| || || Sbjct: 1452 aggatttatcagcatcttcctgaggtcacggtcaactgcttctaccagctcactttcagt 1393 Query: 428 cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487 |||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 1392 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 1333 Query: 488 agcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541 ||| ||||||||||| |||||||| || |||||||||||||| ||||||||||| Sbjct: 1332 agctggagcacgatttggaaagagtgatgagctatatattgttcctaaagtctc 1279
>gb|AF218052.1|AF218052 Zea mays protoporphyrinogen IX oxidase mRNA, complete cds Length = 1608 Score = 202 bits (102), Expect = 9e-49 Identities = 336/414 (81%) Strand = Plus / Minus Query: 128 tcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcacc 187 ||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| || Sbjct: 1608 tcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactttcatacgcgcc 1549 Query: 188 ctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgtc 247 ||| | ||||| ||||| |||||||||||| || ||||| ||||||||||| | ||| || Sbjct: 1548 ctcaacgcatctgcccagggcaactcctgcaacatagttccctcctaggaacagcccatc 1489 Query: 248 gtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatcaa 307 ||| || |||||| |||| |||| |||||| || | || ||||||| ||||| | || Sbjct: 1488 gtagccacctcggtccagggcagcttttgcggcttccagaagatcaagatgtcctaccag 1429 Query: 308 aaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctct 367 ||||| ||||| ||||||||||| |||| || || | |||||||||| ||||| | Sbjct: 1428 gaactgaggtatggcttgtggccaaactcgaacaccaaggactaaagggtccactgctgt 1369 Query: 368 agggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcggt 427 || ||||| | |||||||| ||| ||||| ||||| ||||| || | ||||| || || Sbjct: 1368 agaatttataagcatttttcggaggtcacggtcaactgcttcgaccagctcactttcagt 1309 Query: 428 cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487 |||||| || || ||||| ||||||| ||| || || ||||| ||||||||||| || || Sbjct: 1308 cttggaaacaattcctgtgtttgtagcacctcctatgtagtttagaagtaacaccctacc 1249 Query: 488 agcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541 ||||||||||||| |||||||| || || || |||||||| ||||| ||||| Sbjct: 1248 gtcaggagcacgatttggaaagagtgaggaactgtatattgttcctaatgtctc 1195
>gb|AY111462.1| Zea mays CL1290_1 mRNA sequence Length = 1892 Score = 178 bits (90), Expect = 1e-41 Identities = 340/425 (80%) Strand = Plus / Minus Query: 117 cactacttccatcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactc 176 |||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct: 1619 cacttctttcatcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactc 1560 Query: 177 tcgtacgcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctagg 236 || ||||| ||||| | ||||| ||||| |||||||||||| || ||||| ||||||||| Sbjct: 1559 tcatacgcgccctcaacgcatctgcccagggcaactcctgcaacatagttccctcctagg 1500 Query: 237 aataacccgtcgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaagg 296 || | ||| ||||| || |||||| |||| |||| |||||| || | || ||||||| Sbjct: 1499 aacagcccatcgtagccacctcggtccagggcagcttttgcggcttccagaagatcaaga 1440 Query: 297 tgtccaatcaaaaactgtggtattgcttgtggccacactctgacccctaatgctaaaggg 356 ||||| | || ||||| ||||| ||||| ||||| |||| || || | |||||||| Sbjct: 1439 tgtcctaccaggaactgaggtatggcttggggccaaactcgaacaccaaggactaaaggg 1380 Query: 357 tctgctgctctagggtttatcaacatttttctgagatcacgatcaacagcttctactaag 416 || ||||| ||| ||||| | || | ||| ||||| ||||| ||||| || | Sbjct: 1379 tccactgctgtagaatttataagcannnnncggaggtcacggtcaactgcttcgaccagc 1320 Query: 417 tcactctcggtcttggagacgatccctgtatttgtagaacccccgatatagttcagaagt 476 ||||| || |||||||| || || ||||| ||||||| ||| || || ||||| |||||| Sbjct: 1319 tcactttcagtcttggaaacaattcctgtgtttgtagcacctcctatgtagtttagaagt 1260 Query: 477 aacactcttccagcaggagcacgattgggaaagagagaagagctatatattgtccctaaa 536 ||||| || || ||||||||||||| |||||||| || || || |||||||| ||||| Sbjct: 1259 aacaccctaccgtcaggagcacgatttggaaagagtgaggaactgtatattgttcctaat 1200 Query: 537 gtctc 541 ||||| Sbjct: 1199 gtctc 1195
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 163 bits (82), Expect = 7e-37 Identities = 235/286 (82%) Strand = Plus / Minus Query: 127 atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186 ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 10293279 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 10293220 Query: 187 cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246 | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || | Sbjct: 10293219 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 10293160 Query: 247 cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306 | || || ||| |||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct: 10293159 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 10293100 Query: 307 aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366 ||||||||||| ||||||||||| || | ||| || | | |||||||| ||||| Sbjct: 10293099 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 10293040 Query: 367 tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412 |||| ||||||| ||| || ||||| ||||| ||||| |||||||| Sbjct: 10293039 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 10292994 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 428 cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487 |||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 10292779 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 10292720 Query: 488 agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534 ||| ||||||||||| |||||||| || |||||||||||||| |||| Sbjct: 10292719 agctggagcacgatttggaaagagtgatgagctatatattgttccta 10292673
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 163 bits (82), Expect = 7e-37 Identities = 235/286 (82%) Strand = Plus / Minus Query: 127 atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186 ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 158593 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 158534 Query: 187 cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246 | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || | Sbjct: 158533 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 158474 Query: 247 cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306 | || || ||| |||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct: 158473 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 158414 Query: 307 aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366 ||||||||||| ||||||||||| || | ||| || | | |||||||| ||||| Sbjct: 158413 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 158354 Query: 367 tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412 |||| ||||||| ||| || ||||| ||||| ||||| |||||||| Sbjct: 158353 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 158308 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 428 cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487 |||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 158093 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 158034 Query: 488 agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534 ||| ||||||||||| |||||||| || |||||||||||||| |||| Sbjct: 158033 agctggagcacgatttggaaagagtgatgagctatatattgttccta 157987
>dbj|AB057771.1| Oryza sativa (japonica cultivar-group) PPOX-I/Protox-I gene for protoporphyrinogen oxidase I, complete cds Length = 5441 Score = 163 bits (82), Expect = 7e-37 Identities = 235/286 (82%) Strand = Plus / Minus Query: 127 atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186 ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 4189 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 4130 Query: 187 cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246 | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || | Sbjct: 4129 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 4070 Query: 247 cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306 | || || ||| |||||| |||||||||||||| |||| ||||||| || ||||| | Sbjct: 4069 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 4010 Query: 307 aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366 ||||||||||| ||||||||||| || | ||| || | | |||||||| ||||| Sbjct: 4009 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 3950 Query: 367 tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412 |||| ||||||| ||| || ||||| ||||| ||||| |||||||| Sbjct: 3949 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 3904 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 428 cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487 |||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||| Sbjct: 3689 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 3630 Query: 488 agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534 ||| ||||||||||| |||||||| || |||||||||||||| |||| Sbjct: 3629 agctggagcacgatttggaaagagtgatgagctatatattgttccta 3583
>gb|AY109098.1| Zea mays PCO076390 mRNA sequence Length = 531 Score = 153 bits (77), Expect = 7e-34 Identities = 239/293 (81%) Strand = Plus / Minus Query: 117 cactacttccatcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactc 176 |||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 323 cacttctttcatcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactt 264 Query: 177 tcgtacgcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctagg 236 || ||||| ||||| | ||||| ||||| |||||||||||| || ||||| ||||||||| Sbjct: 263 tcatacgcgccctcaacgcatctgcccagggcaactcctgcaacatagttccctcctagg 204 Query: 237 aataacccgtcgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaagg 296 || | ||| ||||| || |||||| |||| |||| |||||| || | || ||||||| Sbjct: 203 aacagcccatcgtagccacctcggtccagggcagcttttgcggcttccagaagatcaaga 144 Query: 297 tgtccaatcaaaaactgtggtattgcttgtggccacactctgacccctaatgctaaaggg 356 ||||| | || ||||| ||||| ||||||||||| |||| || || | |||||||| Sbjct: 143 tgtcctaccaggaactgaggtatggcttgtggccaaactcgaacaccaaggactaaaggg 84 Query: 357 tctgctgctctagggtttatcaacatttttctgagatcacgatcaacagcttc 409 || ||||| ||| ||||| | |||||||| ||| ||||| ||||| ||||| Sbjct: 83 tccactgctgtagaatttataagcatttttcggaggtcacggtcaactgcttc 31
>dbj|AB029492.1| Spinacia oleracea SO-POX1 mRNA for protoporphyrinogen oxidase (Protox-I), complete cds Length = 1689 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 183 gcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcc 229 |||||||| || ||||||||||| ||||| |||| ||| |||||||| Sbjct: 1634 gcaccctctatacatcggcccaaagcaacacctgatacatagtttcc 1588 Score = 42.1 bits (21), Expect = 1.9 Identities = 42/49 (85%) Strand = Plus / Minus Query: 289 gatcaaggtgtccaatcaaaaactgtggtattgcttgtggccacactct 337 |||||| ||| ||||| ||||| || || |||||||||||||| ||||| Sbjct: 1528 gatcaaagtggccaattaaaaattggggaattgcttgtggccatactct 1480
>gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's Hospital Oakland Research Institute) complete sequence Length = 139727 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 503 gggaaagagagaagagctata 523 ||||||||||||||||||||| Sbjct: 124296 gggaaagagagaagagctata 124276
>dbj|AK048269.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130044M19 product:unclassifiable, full insert sequence Length = 3099 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 aagagcacatattacaaagta 37 ||||||||||||||||||||| Sbjct: 1609 aagagcacatattacaaagta 1589
>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete sequence Length = 221009 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 aagagcacatattacaaagta 37 ||||||||||||||||||||| Sbjct: 42686 aagagcacatattacaaagta 42666
>dbj|AB084788.1| Bovine kobuvirus genomic RNA, complete genome, strain:U-1 Length = 8374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 attgggaaagagagaagagct 520 ||||||||||||||||||||| Sbjct: 1307 attgggaaagagagaagagct 1287
>emb|Y13465.1|NTY13465 Nicotiana tabacum mRNA for protoporphyrin IX oxidase, ppxI gene Length = 1892 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 300 ccaatcaaaaactgtggtattgcttgtggccacactc 336 |||| |||||||||||| || ||||||||||| |||| Sbjct: 1503 ccaaccaaaaactgtgggatagcttgtggccatactc 1467 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 catttttctgagatcacgatcaac 403 |||||||||||| ||||||||||| Sbjct: 1423 catttttctgaggtcacgatcaac 1400
>gb|AF044128.1|AF044128 Nicotiana tabacum protoporphyrinogen oxidase PX-1 mRNA, complete cds Length = 1874 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 300 ccaatcaaaaactgtggtattgcttgtggccacactc 336 |||| |||||||||||| || ||||||||||| |||| Sbjct: 1500 ccaaccaaaaactgtgggatagcttgtggccatactc 1464 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 catttttctgagatcacgatcaac 403 |||||||||||| ||||||||||| Sbjct: 1420 catttttctgaggtcacgatcaac 1397
>dbj|AB020501.1| Nicotiana tabacum mRNA for plastidal protoporphyrinogen oxidase, complete cds Length = 1647 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 300 ccaatcaaaaactgtggtattgcttgtggccacactc 336 |||| |||||||||||| || ||||||||||| |||| Sbjct: 1475 ccaaccaaaaactgtgggatagcttgtggccatactc 1439 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 catttttctgagatcacgatcaac 403 |||||||||||| ||||||||||| Sbjct: 1395 catttttctgaggtcacgatcaac 1372
>gb|AC140218.2| Mus musculus BAC clone RP23-474A22 from chromosome 5, complete sequence Length = 184636 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 506 aaagagagaagagctatatattgt 529 ||||||||||||||| |||||||| Sbjct: 152963 aaagagagaagagctgtatattgt 152940
>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence Length = 204795 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 aaagagagaagagctatatattgt 529 ||||||||||||||| |||||||| Sbjct: 190545 aaagagagaagagctgtatattgt 190568
>gb|AC004141.1| Homo sapiens PAC clone RP5-1110N13 from 7, complete sequence Length = 95921 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 attacaaagtagattaagga 46 |||||||||||||||||||| Sbjct: 67794 attacaaagtagattaagga 67813
>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15, complete sequence Length = 201465 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 aagtaacactcttccagcag 492 |||||||||||||||||||| Sbjct: 82394 aagtaacactcttccagcag 82413
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaagagcacatattacaaa 34 |||||||||||||||||||| Sbjct: 6144 gaaagagcacatattacaaa 6163
>ref|NM_001020497.1| Danio rerio zgc:112960 (zgc:112960), mRNA Length = 1599 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 acactcttccagcaggagca 497 |||||||||||||||||||| Sbjct: 692 acactcttccagcaggagca 711
>gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, complete sequence Length = 101224 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gaaagagcacatattacaaa 34 |||||||||||||||||||| Sbjct: 97341 gaaagagcacatattacaaa 97360
>ref|XM_683321.1| PREDICTED: Danio rerio similar to caspase 6 precursor (LOC559924), mRNA Length = 879 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 acactcttccagcaggagca 497 |||||||||||||||||||| Sbjct: 593 acactcttccagcaggagca 612
>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence Length = 187418 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cctcatatatgcaacaaaat 107 |||||||||||||||||||| Sbjct: 107526 cctcatatatgcaacaaaat 107545
>gb|AC068807.21| Mus musculus 11 BAC RP23-346P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 208135 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ttgggaaagagagaagagct 520 |||||||||||||||||||| Sbjct: 163168 ttgggaaagagagaagagct 163149
>gb|BC094299.1| Danio rerio zgc:112960, mRNA (cDNA clone MGC:112960 IMAGE:7156719), complete cds Length = 1599 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 acactcttccagcaggagca 497 |||||||||||||||||||| Sbjct: 692 acactcttccagcaggagca 711
>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence Length = 195439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ttgggaaagagagaagagct 520 |||||||||||||||||||| Sbjct: 75257 ttgggaaagagagaagagct 75276
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tacaggaaagagcacatatt 29 |||||||||||||||||||| Sbjct: 1815373 tacaggaaagagcacatatt 1815354
>emb|AJ225107.1|STA225107 Solanum tuberosum (cultivar Bintje) chloroplastic protoporphyrinogen IX oxidase Length = 1976 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 305 caaaaactgtggtattgcttgtggccacactc 336 |||||||||||| || ||||||||||| |||| Sbjct: 1497 caaaaactgtgggatagcttgtggccatactc 1466
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cagcagcaaggcgatcaagg 296 |||||||||||||||||||| Sbjct: 3193819 cagcagcaaggcgatcaagg 3193838
>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence Length = 203591 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 caacaaaatgaagaggtgca 118 |||||||||||||||||||| Sbjct: 55786 caacaaaatgaagaggtgca 55767
>gb|AC006203.1|AC006203 Homo sapiens chromosome 18, clone hRPK.453_M_1, complete sequence Length = 185741 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gtgtccaatcaaaaactgtg 315 |||||||||||||||||||| Sbjct: 126695 gtgtccaatcaaaaactgtg 126714
>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3, complete sequence Length = 170200 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 acactcttccagcaggagca 497 |||||||||||||||||||| Sbjct: 13166 acactcttccagcaggagca 13185
>gb|AC004477.1|AC004477 Homo sapiens chromosome 17, clone HRPC890E16, complete sequence Length = 135505 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctacaggaaagagcacatat 28 |||||||||||||||||||| Sbjct: 66722 ctacaggaaagagcacatat 66741
>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence Length = 202833 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cctcatatatgcaacaaaat 107 |||||||||||||||||||| Sbjct: 32296 cctcatatatgcaacaaaat 32315
>emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chromosome 11, complete sequence Length = 187006 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ttgggaaagagagaagagct 520 |||||||||||||||||||| Sbjct: 94602 ttgggaaagagagaagagct 94621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,890,238 Number of Sequences: 3902068 Number of extensions: 4890238 Number of successful extensions: 91557 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91418 Number of HSP's gapped (non-prelim): 137 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)