ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB057749.1| Oryza sativa (japonica cultivar-group) PPOX-I/Pr... 291 1e-75
2ref|NM_187739.1| Oryza sativa (japonica cultivar-group), predic... 289 5e-75
3gb|AF218052.1|AF218052 Zea mays protoporphyrinogen IX oxidase mR... 202 9e-49
4gb|AY111462.1| Zea mays CL1290_1 mRNA sequence 178 1e-41
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
6dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
7dbj|AB057771.1| Oryza sativa (japonica cultivar-group) PPOX-I/Pr... 163 7e-37
8gb|AY109098.1| Zea mays PCO076390 mRNA sequence 153 7e-34
9dbj|AB029492.1| Spinacia oleracea SO-POX1 mRNA for protoporphyri... 46 0.12
10gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's H... 42 1.9
11dbj|AK048269.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.9
12emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chr... 42 1.9
13dbj|AB084788.1| Bovine kobuvirus genomic RNA, complete genome, s... 42 1.9
14emb|Y13465.1|NTY13465 Nicotiana tabacum mRNA for protoporphyrin ... 42 1.9
15gb|AF044128.1|AF044128 Nicotiana tabacum protoporphyrinogen oxid... 42 1.9
16dbj|AB020501.1| Nicotiana tabacum mRNA for plastidal protoporphy... 42 1.9
17gb|AC140218.2| Mus musculus BAC clone RP23-474A22 from chromosom... 40 7.4
18gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, comple... 40 7.4
19gb|AC004141.1| Homo sapiens PAC clone RP5-1110N13 from 7, comple... 40 7.4
20emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in ... 40 7.4
21gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, comp... 40 7.4
22ref|NM_001020497.1| Danio rerio zgc:112960 (zgc:112960), mRNA 40 7.4
23gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, compl... 40 7.4
24ref|XM_683321.1| PREDICTED: Danio rerio similar to caspase 6 pre... 40 7.4
25gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome... 40 7.4
26gb|AC068807.21| Mus musculus 11 BAC RP23-346P7 (Roswell Park Can... 40 7.4
27gb|BC094299.1| Danio rerio zgc:112960, mRNA (cDNA clone MGC:1129... 40 7.4
28gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y... 40 7.4
29gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome 40 7.4
30emb|AJ225107.1|STA225107 Solanum tuberosum (cultivar Bintje) chl... 40 7.4
31emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 7.4
32gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.41... 40 7.4
33gb|AC006203.1|AC006203 Homo sapiens chromosome 18, clone hRPK.45... 40 7.4
34emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 i... 40 7.4
35gb|AC004477.1|AC004477 Homo sapiens chromosome 17, clone HRPC890... 40 7.4
36gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complet... 40 7.4
37emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chr... 40 7.4

>dbj|AB057749.1| Oryza sativa (japonica cultivar-group) PPOX-I/Protox-I mRNA for
            protoporphyrinogen oxidase I, complete cds
          Length = 1923

 Score =  291 bits (147), Expect = 1e-75
 Identities = 348/415 (83%)
 Strand = Plus / Minus

                                                                        
Query: 127  atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186
            ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 1673 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 1614

                                                                        
Query: 187  cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246
            | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || |
Sbjct: 1613 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 1554

                                                                        
Query: 247  cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306
            | || || |||  |||||| ||||||||||||||  ||||  ||||||| || ||||| |
Sbjct: 1553 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 1494

                                                                        
Query: 307  aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366
              ||||||||||| ||||||||||| || | ||| || |   | ||||||||  ||||| 
Sbjct: 1493 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 1434

                                                                        
Query: 367  tagggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcgg 426
            |||| ||||||| ||| || ||||| ||||| ||||| |||||||| |  ||||| || |
Sbjct: 1433 taggatttatcagcatcttcctgaggtcacggtcaactgcttctaccagctcactttcag 1374

                                                                        
Query: 427  tcttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttc 486
            ||||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||
Sbjct: 1373 tcttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttc 1314

                                                                   
Query: 487  cagcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541
            |||| ||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct: 1313 cagctggagcacgatttggaaagagtgatgagctatatattgttcctaaagtctc 1259



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>ref|NM_187739.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1692

 Score =  289 bits (146), Expect = 5e-75
 Identities = 347/414 (83%)
 Strand = Plus / Minus

                                                                        
Query: 128  tcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcacc 187
            |||||||||||| |||||||||||| ||||||||| ||||||||||||||| || |||||
Sbjct: 1692 tcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcacc 1633

                                                                        
Query: 188  ctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgtc 247
             || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || ||
Sbjct: 1632 ttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccatc 1573

                                                                        
Query: 248  gtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatcaa 307
             || || |||  |||||| ||||||||||||||  ||||  ||||||| || ||||| | 
Sbjct: 1572 ataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatgag 1513

                                                                        
Query: 308  aaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctct 367
             ||||||||||| ||||||||||| || | ||| || |   | ||||||||  ||||| |
Sbjct: 1512 gaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgcttt 1453

                                                                        
Query: 368  agggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcggt 427
            ||| ||||||| ||| || ||||| ||||| ||||| |||||||| |  ||||| || ||
Sbjct: 1452 aggatttatcagcatcttcctgaggtcacggtcaactgcttctaccagctcactttcagt 1393

                                                                        
Query: 428  cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487
            |||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 1392 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 1333

                                                                  
Query: 488  agcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541
            ||| ||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct: 1332 agctggagcacgatttggaaagagtgatgagctatatattgttcctaaagtctc 1279



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>gb|AF218052.1|AF218052 Zea mays protoporphyrinogen IX oxidase mRNA, complete cds
          Length = 1608

 Score =  202 bits (102), Expect = 9e-49
 Identities = 336/414 (81%)
 Strand = Plus / Minus

                                                                        
Query: 128  tcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcacc 187
            ||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||| ||
Sbjct: 1608 tcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactttcatacgcgcc 1549

                                                                        
Query: 188  ctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgtc 247
            ||| | ||||| ||||| |||||||||||| || ||||| ||||||||||| | ||| ||
Sbjct: 1548 ctcaacgcatctgcccagggcaactcctgcaacatagttccctcctaggaacagcccatc 1489

                                                                        
Query: 248  gtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatcaa 307
            ||| || |||||| |||| |||| |||||| ||  | ||  ||||||| ||||| | || 
Sbjct: 1488 gtagccacctcggtccagggcagcttttgcggcttccagaagatcaagatgtcctaccag 1429

                                                                        
Query: 308  aaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctct 367
             ||||| ||||| ||||||||||| ||||  || || |   ||||||||||  ||||| |
Sbjct: 1428 gaactgaggtatggcttgtggccaaactcgaacaccaaggactaaagggtccactgctgt 1369

                                                                        
Query: 368  agggtttatcaacatttttctgagatcacgatcaacagcttctactaagtcactctcggt 427
            ||  ||||| | |||||||| ||| ||||| ||||| ||||| || |  ||||| || ||
Sbjct: 1368 agaatttataagcatttttcggaggtcacggtcaactgcttcgaccagctcactttcagt 1309

                                                                        
Query: 428  cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487
            |||||| || || ||||| ||||||| ||| || || ||||| ||||||||||| || ||
Sbjct: 1308 cttggaaacaattcctgtgtttgtagcacctcctatgtagtttagaagtaacaccctacc 1249

                                                                  
Query: 488  agcaggagcacgattgggaaagagagaagagctatatattgtccctaaagtctc 541
              ||||||||||||| |||||||| || || || |||||||| ||||| |||||
Sbjct: 1248 gtcaggagcacgatttggaaagagtgaggaactgtatattgttcctaatgtctc 1195



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>gb|AY111462.1| Zea mays CL1290_1 mRNA sequence
          Length = 1892

 Score =  178 bits (90), Expect = 1e-41
 Identities = 340/425 (80%)
 Strand = Plus / Minus

                                                                        
Query: 117  cactacttccatcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactc 176
            |||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 1619 cacttctttcatcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactc 1560

                                                                        
Query: 177  tcgtacgcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctagg 236
            || ||||| ||||| | ||||| ||||| |||||||||||| || ||||| |||||||||
Sbjct: 1559 tcatacgcgccctcaacgcatctgcccagggcaactcctgcaacatagttccctcctagg 1500

                                                                        
Query: 237  aataacccgtcgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaagg 296
            || | ||| ||||| || |||||| |||| |||| |||||| ||  | ||  ||||||| 
Sbjct: 1499 aacagcccatcgtagccacctcggtccagggcagcttttgcggcttccagaagatcaaga 1440

                                                                        
Query: 297  tgtccaatcaaaaactgtggtattgcttgtggccacactctgacccctaatgctaaaggg 356
            ||||| | ||  ||||| ||||| ||||| ||||| ||||  || || |   ||||||||
Sbjct: 1439 tgtcctaccaggaactgaggtatggcttggggccaaactcgaacaccaaggactaaaggg 1380

                                                                        
Query: 357  tctgctgctctagggtttatcaacatttttctgagatcacgatcaacagcttctactaag 416
            ||  ||||| |||  ||||| | ||     | ||| ||||| ||||| ||||| || |  
Sbjct: 1379 tccactgctgtagaatttataagcannnnncggaggtcacggtcaactgcttcgaccagc 1320

                                                                        
Query: 417  tcactctcggtcttggagacgatccctgtatttgtagaacccccgatatagttcagaagt 476
            ||||| || |||||||| || || ||||| ||||||| ||| || || ||||| ||||||
Sbjct: 1319 tcactttcagtcttggaaacaattcctgtgtttgtagcacctcctatgtagtttagaagt 1260

                                                                        
Query: 477  aacactcttccagcaggagcacgattgggaaagagagaagagctatatattgtccctaaa 536
            ||||| || ||  ||||||||||||| |||||||| || || || |||||||| ||||| 
Sbjct: 1259 aacaccctaccgtcaggagcacgatttggaaagagtgaggaactgtatattgttcctaat 1200

                 
Query: 537  gtctc 541
            |||||
Sbjct: 1199 gtctc 1195



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  163 bits (82), Expect = 7e-37
 Identities = 235/286 (82%)
 Strand = Plus / Minus

                                                                            
Query: 127      atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186
                ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 10293279 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 10293220

                                                                            
Query: 187      cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246
                | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || |
Sbjct: 10293219 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 10293160

                                                                            
Query: 247      cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306
                | || || |||  |||||| ||||||||||||||  ||||  ||||||| || ||||| |
Sbjct: 10293159 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 10293100

                                                                            
Query: 307      aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366
                  ||||||||||| ||||||||||| || | ||| || |   | ||||||||  ||||| 
Sbjct: 10293099 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 10293040

                                                              
Query: 367      tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412
                |||| ||||||| ||| || ||||| ||||| ||||| ||||||||
Sbjct: 10293039 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 10292994



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                            
Query: 428      cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487
                |||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 10292779 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 10292720

                                                               
Query: 488      agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534
                ||| ||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 10292719 agctggagcacgatttggaaagagtgatgagctatatattgttccta 10292673



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>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0498A12
          Length = 159749

 Score =  163 bits (82), Expect = 7e-37
 Identities = 235/286 (82%)
 Strand = Plus / Minus

                                                                          
Query: 127    atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186
              ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 158593 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 158534

                                                                          
Query: 187    cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246
              | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || |
Sbjct: 158533 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 158474

                                                                          
Query: 247    cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306
              | || || |||  |||||| ||||||||||||||  ||||  ||||||| || ||||| |
Sbjct: 158473 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 158414

                                                                          
Query: 307    aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366
                ||||||||||| ||||||||||| || | ||| || |   | ||||||||  ||||| 
Sbjct: 158413 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 158354

                                                            
Query: 367    tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412
              |||| ||||||| ||| || ||||| ||||| ||||| ||||||||
Sbjct: 158353 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 158308



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                          
Query: 428    cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487
              |||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 158093 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 158034

                                                             
Query: 488    agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534
              ||| ||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 158033 agctggagcacgatttggaaagagtgatgagctatatattgttccta 157987



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>dbj|AB057771.1| Oryza sativa (japonica cultivar-group) PPOX-I/Protox-I gene for
            protoporphyrinogen oxidase I, complete cds
          Length = 5441

 Score =  163 bits (82), Expect = 7e-37
 Identities = 235/286 (82%)
 Strand = Plus / Minus

                                                                        
Query: 127  atcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactctcgtacgcac 186
            ||||||||||||| |||||||||||| ||||||||| ||||||||||||||| || ||||
Sbjct: 4189 atcacttgtaggcgtacttggtcaagtagtcagatatttgtgaggcactctcatatgcac 4130

                                                                        
Query: 187  cctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctaggaataacccgt 246
            | || | ||||||||||| |||||||||||| || ||||| ||||| ||||| || || |
Sbjct: 4129 cttcaacgcatcggcccagggcaactcctgcaacatagttccctccgaggaacaatccat 4070

                                                                        
Query: 247  cgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaaggtgtccaatca 306
            | || || |||  |||||| ||||||||||||||  ||||  ||||||| || ||||| |
Sbjct: 4069 cataaccacctttgcccagggcagattttgcagcctcaagatgatcaagatggccaatga 4010

                                                                        
Query: 307  aaaactgtggtattgcttgtggccacactctgacccctaatgctaaagggtctgctgctc 366
              ||||||||||| ||||||||||| || | ||| || |   | ||||||||  ||||| 
Sbjct: 4009 ggaactgtggtatggcttgtggccatacccggacgccaaggaccaaagggtccactgctt 3950

                                                          
Query: 367  tagggtttatcaacatttttctgagatcacgatcaacagcttctac 412
            |||| ||||||| ||| || ||||| ||||| ||||| ||||||||
Sbjct: 3949 taggatttatcagcatcttcctgaggtcacggtcaactgcttctac 3904



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Minus

                                                                        
Query: 428  cttggagacgatccctgtatttgtagaacccccgatatagttcagaagtaacactcttcc 487
            |||||| || |||||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct: 3689 cttggaaacaatccctgtatttgtagaacctcctatgtagttcagaagtaacacccttcc 3630

                                                           
Query: 488  agcaggagcacgattgggaaagagagaagagctatatattgtcccta 534
            ||| ||||||||||| |||||||| || |||||||||||||| ||||
Sbjct: 3629 agctggagcacgatttggaaagagtgatgagctatatattgttccta 3583



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>gb|AY109098.1| Zea mays PCO076390 mRNA sequence
          Length = 531

 Score =  153 bits (77), Expect = 7e-34
 Identities = 239/293 (81%)
 Strand = Plus / Minus

                                                                       
Query: 117 cactacttccatcacttgtaggcatacttggtcaagaagtcagatacttgtgaggcactc 176
           |||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| 
Sbjct: 323 cacttctttcatcacttgtaggcatacttggtcaagaagtcagatatttgcgaggcactt 264

                                                                       
Query: 177 tcgtacgcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcctcctagg 236
           || ||||| ||||| | ||||| ||||| |||||||||||| || ||||| |||||||||
Sbjct: 263 tcatacgcgccctcaacgcatctgcccagggcaactcctgcaacatagttccctcctagg 204

                                                                       
Query: 237 aataacccgtcgtacccgcctcggcccagtgcagattttgcagcagcaaggcgatcaagg 296
           || | ||| ||||| || |||||| |||| |||| |||||| ||  | ||  ||||||| 
Sbjct: 203 aacagcccatcgtagccacctcggtccagggcagcttttgcggcttccagaagatcaaga 144

                                                                       
Query: 297 tgtccaatcaaaaactgtggtattgcttgtggccacactctgacccctaatgctaaaggg 356
           ||||| | ||  ||||| ||||| ||||||||||| ||||  || || |   ||||||||
Sbjct: 143 tgtcctaccaggaactgaggtatggcttgtggccaaactcgaacaccaaggactaaaggg 84

                                                                
Query: 357 tctgctgctctagggtttatcaacatttttctgagatcacgatcaacagcttc 409
           ||  ||||| |||  ||||| | |||||||| ||| ||||| ||||| |||||
Sbjct: 83  tccactgctgtagaatttataagcatttttcggaggtcacggtcaactgcttc 31



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>dbj|AB029492.1| Spinacia oleracea SO-POX1 mRNA for protoporphyrinogen oxidase
            (Protox-I), complete cds
          Length = 1689

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 183  gcaccctcgatgcatcggcccaaggcaactcctgctacgtagtttcc 229
            |||||||| || ||||||||||| ||||| |||| ||| ||||||||
Sbjct: 1634 gcaccctctatacatcggcccaaagcaacacctgatacatagtttcc 1588



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 289  gatcaaggtgtccaatcaaaaactgtggtattgcttgtggccacactct 337
            |||||| ||| ||||| ||||| || || |||||||||||||| |||||
Sbjct: 1528 gatcaaagtggccaattaaaaattggggaattgcttgtggccatactct 1480



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>gb|AC125680.4| Rattus norvegicus X BAC CH230-10I21 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 139727

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 503    gggaaagagagaagagctata 523
              |||||||||||||||||||||
Sbjct: 124296 gggaaagagagaagagctata 124276



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>dbj|AK048269.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130044M19 product:unclassifiable, full
            insert sequence
          Length = 3099

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 17   aagagcacatattacaaagta 37
            |||||||||||||||||||||
Sbjct: 1609 aagagcacatattacaaagta 1589



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>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete
             sequence
          Length = 221009

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 17    aagagcacatattacaaagta 37
             |||||||||||||||||||||
Sbjct: 42686 aagagcacatattacaaagta 42666



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>dbj|AB084788.1| Bovine kobuvirus genomic RNA, complete genome, strain:U-1
          Length = 8374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 500  attgggaaagagagaagagct 520
            |||||||||||||||||||||
Sbjct: 1307 attgggaaagagagaagagct 1287



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>emb|Y13465.1|NTY13465 Nicotiana tabacum mRNA for protoporphyrin IX oxidase, ppxI gene
          Length = 1892

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 300  ccaatcaaaaactgtggtattgcttgtggccacactc 336
            |||| |||||||||||| || ||||||||||| ||||
Sbjct: 1503 ccaaccaaaaactgtgggatagcttgtggccatactc 1467



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  catttttctgagatcacgatcaac 403
            |||||||||||| |||||||||||
Sbjct: 1423 catttttctgaggtcacgatcaac 1400



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>gb|AF044128.1|AF044128 Nicotiana tabacum protoporphyrinogen oxidase PX-1 mRNA, complete cds
          Length = 1874

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 300  ccaatcaaaaactgtggtattgcttgtggccacactc 336
            |||| |||||||||||| || ||||||||||| ||||
Sbjct: 1500 ccaaccaaaaactgtgggatagcttgtggccatactc 1464



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  catttttctgagatcacgatcaac 403
            |||||||||||| |||||||||||
Sbjct: 1420 catttttctgaggtcacgatcaac 1397



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>dbj|AB020501.1| Nicotiana tabacum mRNA for plastidal protoporphyrinogen oxidase,
            complete cds
          Length = 1647

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 300  ccaatcaaaaactgtggtattgcttgtggccacactc 336
            |||| |||||||||||| || ||||||||||| ||||
Sbjct: 1475 ccaaccaaaaactgtgggatagcttgtggccatactc 1439



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 380  catttttctgagatcacgatcaac 403
            |||||||||||| |||||||||||
Sbjct: 1395 catttttctgaggtcacgatcaac 1372



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>gb|AC140218.2| Mus musculus BAC clone RP23-474A22 from chromosome 5, complete sequence
          Length = 184636

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 506    aaagagagaagagctatatattgt 529
              ||||||||||||||| ||||||||
Sbjct: 152963 aaagagagaagagctgtatattgt 152940



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>gb|AC123063.4| Mus musculus BAC clone RP23-219I20 from 5, complete sequence
          Length = 204795

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 506    aaagagagaagagctatatattgt 529
              ||||||||||||||| ||||||||
Sbjct: 190545 aaagagagaagagctgtatattgt 190568



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>gb|AC004141.1| Homo sapiens PAC clone RP5-1110N13 from 7, complete sequence
          Length = 95921

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    attacaaagtagattaagga 46
             ||||||||||||||||||||
Sbjct: 67794 attacaaagtagattaagga 67813



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>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15,
             complete sequence
          Length = 201465

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   aagtaacactcttccagcag 492
             ||||||||||||||||||||
Sbjct: 82394 aagtaacactcttccagcag 82413



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>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence
          Length = 206737

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 15   gaaagagcacatattacaaa 34
            ||||||||||||||||||||
Sbjct: 6144 gaaagagcacatattacaaa 6163



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>ref|NM_001020497.1| Danio rerio zgc:112960 (zgc:112960), mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 478 acactcttccagcaggagca 497
           ||||||||||||||||||||
Sbjct: 692 acactcttccagcaggagca 711



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>gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, complete sequence
          Length = 101224

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    gaaagagcacatattacaaa 34
             ||||||||||||||||||||
Sbjct: 97341 gaaagagcacatattacaaa 97360



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>ref|XM_683321.1| PREDICTED: Danio rerio similar to caspase 6 precursor (LOC559924),
           mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 478 acactcttccagcaggagca 497
           ||||||||||||||||||||
Sbjct: 593 acactcttccagcaggagca 612



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>gb|AC155930.3| Mus musculus BAC clone RP23-412K9 from chromosome 7, complete sequence
          Length = 187418

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     cctcatatatgcaacaaaat 107
              ||||||||||||||||||||
Sbjct: 107526 cctcatatatgcaacaaaat 107545



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>gb|AC068807.21| Mus musculus 11 BAC RP23-346P7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 208135

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 501    ttgggaaagagagaagagct 520
              ||||||||||||||||||||
Sbjct: 163168 ttgggaaagagagaagagct 163149



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>gb|BC094299.1| Danio rerio zgc:112960, mRNA (cDNA clone MGC:112960 IMAGE:7156719),
           complete cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 478 acactcttccagcaggagca 497
           ||||||||||||||||||||
Sbjct: 692 acactcttccagcaggagca 711



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>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ttgggaaagagagaagagct 520
             ||||||||||||||||||||
Sbjct: 75257 ttgggaaagagagaagagct 75276



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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      tacaggaaagagcacatatt 29
               ||||||||||||||||||||
Sbjct: 1815373 tacaggaaagagcacatatt 1815354



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>emb|AJ225107.1|STA225107 Solanum tuberosum (cultivar Bintje) chloroplastic protoporphyrinogen
            IX oxidase
          Length = 1976

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 305  caaaaactgtggtattgcttgtggccacactc 336
            |||||||||||| || ||||||||||| ||||
Sbjct: 1497 caaaaactgtgggatagcttgtggccatactc 1466



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 277     cagcagcaaggcgatcaagg 296
               ||||||||||||||||||||
Sbjct: 3193819 cagcagcaaggcgatcaagg 3193838



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>gb|AC007156.2|AC007156 Homo sapiens chromosome 18, clone hRPK.419_J_16, complete sequence
          Length = 203591

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    caacaaaatgaagaggtgca 118
             ||||||||||||||||||||
Sbjct: 55786 caacaaaatgaagaggtgca 55767



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>gb|AC006203.1|AC006203 Homo sapiens chromosome 18, clone hRPK.453_M_1, complete sequence
          Length = 185741

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    gtgtccaatcaaaaactgtg 315
              ||||||||||||||||||||
Sbjct: 126695 gtgtccaatcaaaaactgtg 126714



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>emb|BX005142.4| Zebrafish DNA sequence from clone CH211-129K16 in linkage group 3,
             complete sequence
          Length = 170200

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   acactcttccagcaggagca 497
             ||||||||||||||||||||
Sbjct: 13166 acactcttccagcaggagca 13185



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>gb|AC004477.1|AC004477 Homo sapiens chromosome 17, clone HRPC890E16, complete sequence
          Length = 135505

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ctacaggaaagagcacatat 28
             ||||||||||||||||||||
Sbjct: 66722 ctacaggaaagagcacatat 66741



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>gb|AC126052.4| Mus musculus BAC clone RP23-277H6 from 7, complete sequence
          Length = 202833

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    cctcatatatgcaacaaaat 107
             ||||||||||||||||||||
Sbjct: 32296 cctcatatatgcaacaaaat 32315



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>emb|AL591436.8| Mouse DNA sequence from clone RP23-434F13 on chromosome 11, complete
             sequence
          Length = 187006

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ttgggaaagagagaagagct 520
             ||||||||||||||||||||
Sbjct: 94602 ttgggaaagagagaagagct 94621


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,890,238
Number of Sequences: 3902068
Number of extensions: 4890238
Number of successful extensions: 91557
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91418
Number of HSP's gapped (non-prelim): 137
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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