ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15l14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 594 cgatcacgagcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggt 653 |||||| |||||||||||||||||||||||||| || |||| ||| ||||| |||||||| Sbjct: 31442977 cgatcaggagcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggt 31443036 Query: 654 cgacatgaggtctgacagccggtcgctga 682 | ||||||||| |||||||||||||||| Sbjct: 31443037 ggccatgaggtcggacagccggtcgctga 31443065 Score = 91.7 bits (46), Expect = 3e-15 Identities = 65/70 (92%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 71 gtagtagtggtcggtcggttgtctatagaggacacaactcgatccaatgc-caccaacta 129 |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| Sbjct: 31442508 gtagtagtggtcggtcggttgtctgtagaggacacaactcgatccaaaccacaccagcta 31442567 Query: 130 aatttacata 139 |||||||||| Sbjct: 31442568 aatttacata 31442577
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 594 cgatcacgagcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggt 653 |||||| |||||||||||||||||||||||||| || |||| ||| ||||| |||||||| Sbjct: 78374 cgatcaggagcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggt 78433 Query: 654 cgacatgaggtctgacagccggtcgctga 682 | ||||||||| |||||||||||||||| Sbjct: 78434 ggccatgaggtcggacagccggtcgctga 78462 Score = 91.7 bits (46), Expect = 3e-15 Identities = 65/70 (92%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 71 gtagtagtggtcggtcggttgtctatagaggacacaactcgatccaatgc-caccaacta 129 |||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| Sbjct: 77905 gtagtagtggtcggtcggttgtctgtagaggacacaactcgatccaaaccacaccagcta 77964 Query: 130 aatttacata 139 |||||||||| Sbjct: 77965 aatttacata 77974
>ref|XM_467790.1| Oryza sativa (japonica cultivar-group), mRNA Length = 267 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Minus Query: 601 gagcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatg 660 |||||||||||||||||||||||||| || |||| ||| ||||| |||||||| | |||| Sbjct: 263 gagcggaggatgctgcggatgatctccgcgccggggctgttgtgatccatggtggccatg 204 Query: 661 aggtctgacagccggtcgctga 682 ||||| |||||||||||||||| Sbjct: 203 aggtcggacagccggtcgctga 182
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 2e-04 Identities = 77/92 (83%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 661 ||||||||| ||||||||||||||| || || | ||| ||||| |||||| | ||||| Sbjct: 6568134 agcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggccatga 6568075 Query: 662 ggtctgacagccggtcgctgaaggtcgtccac 693 |||| || |||| ||||||| ||||||||||| Sbjct: 6568074 ggtcggagagcctgtcgctg-aggtcgtccac 6568044
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 56.0 bits (28), Expect = 2e-04 Identities = 77/92 (83%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 661 ||||||||| ||||||||||||||| || || | ||| ||||| |||||| | ||||| Sbjct: 2260 agcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggccatga 2201 Query: 662 ggtctgacagccggtcgctgaaggtcgtccac 693 |||| || |||| ||||||| ||||||||||| Sbjct: 2200 ggtcggagagcctgtcgctg-aggtcgtccac 2170
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 56.0 bits (28), Expect = 2e-04 Identities = 77/92 (83%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 661 ||||||||| ||||||||||||||| || || | ||| ||||| |||||| | ||||| Sbjct: 84510 agcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggccatga 84451 Query: 662 ggtctgacagccggtcgctgaaggtcgtccac 693 |||| || |||| ||||||| ||||||||||| Sbjct: 84450 ggtcggagagcctgtcgctg-aggtcgtccac 84420
>dbj|AK071601.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102C01, full insert sequence Length = 799 Score = 56.0 bits (28), Expect = 2e-04 Identities = 77/92 (83%), Gaps = 1/92 (1%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 661 ||||||||| ||||||||||||||| || || | ||| ||||| |||||| | ||||| Sbjct: 368 agcggaggaggctgcggatgatctcggcgcctgggctgttgtgatccatgccggccatga 309 Query: 662 ggtctgacagccggtcgctgaaggtcgtccac 693 |||| || |||| ||||||| ||||||||||| Sbjct: 308 ggtcggagagcctgtcgctg-aggtcgtccac 278
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.039 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 604 cggaggatgctgcggatgatctctgc-tccggcgctattgtggtccatggtcgacatgag 662 ||||||| ||| ||||||||||| || | ||| ||| |||| |||||| ||||||||||| Sbjct: 3827949 cggaggaggctccggatgatctcggcctgcgg-gctgttgttgtccatcgtcgacatgag 3827891 Query: 663 gtctgacagccggtcg 678 || |||||||||||| Sbjct: 3827890 ctccgacagccggtcg 3827875
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 48.1 bits (24), Expect = 0.039 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 604 cggaggatgctgcggatgatctctgc-tccggcgctattgtggtccatggtcgacatgag 662 ||||||| ||| ||||||||||| || | ||| ||| |||| |||||| ||||||||||| Sbjct: 106573 cggaggaggctccggatgatctcggcctgcgg-gctgttgttgtccatcgtcgacatgag 106515 Query: 663 gtctgacagccggtcg 678 || |||||||||||| Sbjct: 106514 ctccgacagccggtcg 106499
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.039 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 604 cggaggatgctgcggatgatctctgc-tccggcgctattgtggtccatggtcgacatgag 662 ||||||| ||| ||||||||||| || | ||| ||| |||| |||||| ||||||||||| Sbjct: 3828060 cggaggaggctccggatgatctcggcctgcgg-gctgttgttgtccatcgtcgacatgag 3828002 Query: 663 gtctgacagccggtcg 678 || |||||||||||| Sbjct: 3828001 ctccgacagccggtcg 3827986
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 48.1 bits (24), Expect = 0.039 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 604 cggaggatgctgcggatgatctctgc-tccggcgctattgtggtccatggtcgacatgag 662 ||||||| ||| ||||||||||| || | ||| ||| |||| |||||| ||||||||||| Sbjct: 34422 cggaggaggctccggatgatctcggcctgcgg-gctgttgttgtccatcgtcgacatgag 34364 Query: 663 gtctgacagccggtcg 678 || |||||||||||| Sbjct: 34363 ctccgacagccggtcg 34348
>gb|AY109268.1| Zea mays PCO069225 mRNA sequence Length = 598 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 72 tagtagtggtcggtcggttgtct 94 ||||||||||||||||||||||| Sbjct: 512 tagtagtggtcggtcggttgtct 490
>ref|XM_948808.1| Theileria annulata strain Ankara hypothetical protein (TA06135) partial mRNA Length = 2595 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 acgcagtacagcagaaggagtg 360 |||||||||||||||||||||| Sbjct: 1769 acgcagtacagcagaaggagtg 1790
>emb|AL354736.10| Human DNA sequence from clone RP11-205B18 on chromosome 13 Contains the 5' end of a novel gene (FLJ32909), complete sequence Length = 158460 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 446 aaatatgtggaggacaaatata 467 |||||||||||||||||||||| Sbjct: 13989 aaatatgtggaggacaaatata 14010
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 22 atggcgttgatattagtttgctcta 46 ||||||||| ||||||||||||||| Sbjct: 302547 atggcgttgctattagtttgctcta 302571
>ref|NM_196405.1| Oryza sativa (japonica cultivar-group) hypothetical protein similar to putative DNA binding proteins (OSJNBa0044A10.22), mRNA Length = 267 Score = 42.1 bits (21), Expect = 2.4 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Minus Query: 645 gtccatggtcgacatgaggtctgacagccggtcgctgaaggtcgtccac 693 ||||||||||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 222 gtccatggtcgccatgagctccgacagccgctcgct-caggtcgtccac 175
>gb|AC161812.3| Mus musculus chromosome 15, clone RP23-195I24, complete sequence Length = 204464 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 aagaggggaagaggcagacag 190 ||||||||||||||||||||| Sbjct: 140633 aagaggggaagaggcagacag 140613
>gb|AC130217.4| Mus musculus BAC clone RP23-237P18 from chromosome 13, complete sequence Length = 198116 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 agaacaaaagaggggaagagg 183 ||||||||||||||||||||| Sbjct: 92983 agaacaaaagaggggaagagg 92963 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 agaacaaaagaggggaagagg 183 ||||||||||||||||||||| Sbjct: 92794 agaacaaaagaggggaagagg 92774
>gb|AC124055.6| Homo sapiens chromosome 11, clone RP4-608B4, complete sequence Length = 133815 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gaaagggagaacaaaagaggg 176 ||||||||||||||||||||| Sbjct: 45289 gaaagggagaacaaaagaggg 45309
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 42.1 bits (21), Expect = 2.4 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 645 gtccatggtcgacatgaggtctgacagccggtcgctgaaggtcgtccac 693 ||||||||||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 53341 gtccatggtcgccatgagctccgacagccgctcgct-caggtcgtccac 53388
>gb|AC021032.9| Homo sapiens chromosome 10 clone RP11-180I22, complete sequence Length = 160635 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gagaaagggagaacaaaagag 174 ||||||||||||||||||||| Sbjct: 13364 gagaaagggagaacaaaagag 13344
>emb|AJ006345.1|HSA6345 Homo sapiens KVLQT1 gene Length = 404123 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 gaaagggagaacaaaagaggg 176 ||||||||||||||||||||| Sbjct: 208637 gaaagggagaacaaaagaggg 208617
>gb|AC021424.6| Homo sapiens chromosome 11, clone RP11-38L8, complete sequence Length = 181025 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gaaagggagaacaaaagaggg 176 ||||||||||||||||||||| Sbjct: 174301 gaaagggagaacaaaagaggg 174321
>gb|AC083943.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence Length = 169270 Score = 42.1 bits (21), Expect = 2.4 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 645 gtccatggtcgacatgaggtctgacagccggtcgctgaaggtcgtccac 693 ||||||||||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 162611 gtccatggtcgccatgagctccgacagccgctcgct-caggtcgtccac 162658
>gb|AC104834.4| Mus Musculus Strain C57BL6/J Chromosome 15 RP23-274F23, complete sequence Length = 215113 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 aagaggggaagaggcagacag 190 ||||||||||||||||||||| Sbjct: 139400 aagaggggaagaggcagacag 139420
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 tcctcgccgacctgccggcac 582 ||||||||||||||||||||| Sbjct: 2146175 tcctcgccgacctgccggcac 2146155
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.4 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 645 gtccatggtcgacatgaggtctgacagccggtcgctgaaggtcgtccac 693 ||||||||||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 13207092 gtccatggtcgccatgagctccgacagccgctcgct-caggtcgtccac 13207139
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.4 Identities = 43/49 (87%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 645 gtccatggtcgacatgaggtctgacagccggtcgctgaaggtcgtccac 693 ||||||||||| |||||| || |||||||| ||||| ||||||||||| Sbjct: 13214432 gtccatggtcgccatgagctccgacagccgctcgct-caggtcgtccac 13214479
>gb|AC002403.1|AC002403 Human Chromosome 11p15.5 pac pDJ608b4, complete sequence Length = 132960 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gaaagggagaacaaaagaggg 176 ||||||||||||||||||||| Sbjct: 45289 gaaagggagaacaaaagaggg 45309
>gb|U90095.1|U90095 Human Chromosome 11p15.5 pac pDJ74k15, complete sequence Length = 120229 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 gaaagggagaacaaaagaggg 176 ||||||||||||||||||||| Sbjct: 113873 gaaagggagaacaaaagaggg 113893
>gb|AC009391.16| Drosophila melanogaster clone BACR21I23, complete sequence Length = 189254 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cagaaagggagcaggaaaga 434 |||||||||||||||||||| Sbjct: 151230 cagaaagggagcaggaaaga 151211
>gb|AC137902.10| Mus musculus chromosome 15, clone RP23-372O9, complete sequence Length = 196712 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 agaaagggagaacaaaagag 174 |||||||||||||||||||| Sbjct: 101729 agaaagggagaacaaaagag 101748
>gb|AC140339.4| Mus musculus BAC clone RP24-64N14 from chromosome 17, complete sequence Length = 229599 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 gagccatctatccagctccgagct 225 ||||||||| |||||||||||||| Sbjct: 54472 gagccatctctccagctccgagct 54449
>gb|AC044807.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-412F2, complete sequence Length = 182150 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gacaggaggaggaacggagc 205 |||||||||||||||||||| Sbjct: 163956 gacaggaggaggaacggagc 163937
>gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete sequence Length = 40150 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 ctcaagcggcagccagcgcg 288 |||||||||||||||||||| Sbjct: 12789 ctcaagcggcagccagcgcg 12770
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gacaggaggaggaacggagc 205 |||||||||||||||||||| Sbjct: 12636 gacaggaggaggaacggagc 12617
>gb|AC114423.16| Mus musculus chromosome 6, clone RP23-461C23, complete sequence Length = 205074 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 416 agaaagggagcaggaaagagatacatat 443 |||||||||| |||||||||||| |||| Sbjct: 85759 agaaagggagtaggaaagagatagatat 85786
>gb|AC127694.3| Mus musculus BAC clone RP23-235J3 from chromosome 7, complete sequence Length = 225732 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 acggagccatctatccagctccga 222 |||||||||||| ||||||||||| Sbjct: 133874 acggagccatctctccagctccga 133897
>emb|CR723470.2|CNS0GL6C Tetraodon nigroviridis full-length cDNA Length = 1442 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatg 621 |||||||||||||||||||| Sbjct: 98 agcggaggatgctgcggatg 79
>emb|CR690956.2|CNS0FW3C Tetraodon nigroviridis full-length cDNA Length = 1648 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatg 621 |||||||||||||||||||| Sbjct: 123 agcggaggatgctgcggatg 104
>emb|CR681972.2|CNS0FP5S Tetraodon nigroviridis full-length cDNA Length = 1630 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 agcggaggatgctgcggatg 621 |||||||||||||||||||| Sbjct: 115 agcggaggatgctgcggatg 96
>emb|AL607067.17| Human DNA sequence from clone RP11-201K10 on chromosome 1 Contains a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene and the KRTCAP2 gene for keratinocyte associated protein 2, complete sequence Length = 32360 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 agatacatatttaaatatgt 453 |||||||||||||||||||| Sbjct: 5573 agatacatatttaaatatgt 5554 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 agatacatatttaaatatgt 453 |||||||||||||||||||| Sbjct: 5550 agatacatatttaaatatgt 5569 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 agatacatatttaaatatgt 453 |||||||||||||||||||| Sbjct: 5542 agatacatatttaaatatgt 5523
>emb|AL645821.1| Human DNA sequence from clone RP3-465G10 on chromosome Xq21.1 Contains the 5' end of the gene for a novel protein similar to phosphoglycerate mutase 3 (LOC349441)(possible pseudogene) and the ATP7A gene for Cu++ transporting ATPase alpha polypeptide (Menkes syndrome), complete sequence Length = 84163 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 agagatacatatttaaatat 451 |||||||||||||||||||| Sbjct: 33217 agagatacatatttaaatat 33236
>emb|AL592166.16| Human DNA sequence from clone RP11-269F19 on chromosome 1 Contains the KIF2C gene for kinesin family member 2C, a novel gene, the RPS8 gene for ribosomal protein S8, a ribosomal protein S15a (RPS15A) pseudogene, the VMD2L2 gene for vitelliform macular dystrophy-like 2, the CNK gene for cytokine-inducible kinase, the gene for a novel protein, a novel gene (FLJ31588), the 3' end of the PTCH2 gene for patched homolog 2 (Drosophila) and seven CpG islands, complete sequence Length = 90550 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 gagaaagggagaacaaaagagggg 177 |||||| ||||||||||||||||| Sbjct: 55077 gagaaatggagaacaaaagagggg 55054
>emb|AL606468.8| Human DNA sequence from clone RP11-15I11 on chromosome 1 Contains the 3' end of the RAMP gene for RA-regulated nuclear matrix-associated protein, a novel gene and the 3' end of a novel gene, complete sequence Length = 160200 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 158 aagggagaacaaaagaggggaagaggcagaca 189 ||||||||||||||||||| || |||||||| Sbjct: 147708 aagggagaacaaaagagggcaaagggcagaca 147739
>ref|XM_783711.1| PREDICTED: Strongylocentrotus purpuratus similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) (LOC583818), mRNA Length = 717 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 atttaaatatgtggaggaca 461 |||||||||||||||||||| Sbjct: 680 atttaaatatgtggaggaca 661
>emb|AL121900.26|HSBA379J5 Human DNA sequence from clone RP11-379J5 on chromosome 20 Contains the 3' end of the SEC23B gene for Sec23 (S. cerevisiae) homolog B, two novel genes, the 5' end of the HARS2 gene for histidyl-tRNA synthetase 2, a pseudogene similar to part of homeobox proteins and two CpG islands, complete sequence Length = 149933 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 aggcagaaagggagcaggaa 431 |||||||||||||||||||| Sbjct: 123368 aggcagaaagggagcaggaa 123349
>emb|AL118513.17|HSDJ685L9 Human DNA sequence from clone RP4-685L9 on chromosome 20 Contains the gene for a novel protein (FLJ90166), the 5' end of a nove genel (LOC149773) and two CpG islands, complete sequence Length = 92835 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 agaaggagtgaagcttaggg 370 |||||||||||||||||||| Sbjct: 76829 agaaggagtgaagcttaggg 76848
>emb|Z94801.1|HS465G10B Human DNA sequence from PAC 465G10 on chromosome X contains Menkes Disease (ATP7A) putative Cu++-transporting P-type ATPase exons 2 to 21, PGAM-B, ESTs Length = 74432 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 agagatacatatttaaatat 451 |||||||||||||||||||| Sbjct: 41216 agagatacatatttaaatat 41197
>emb|CR352431.1| Gallus gallus finished cDNA, clone ChEST325l16 Length = 1124 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 agaaagggagcaggaaagag 435 |||||||||||||||||||| Sbjct: 584 agaaagggagcaggaaagag 565
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 ccatggcgccgccgccgctt 542 |||||||||||||||||||| Sbjct: 13835854 ccatggcgccgccgccgctt 13835835
>gb|AC008028.3|AC008028 Drosophila melanogaster, chromosome 3R, region 98C-98D, BAC clone BACR14L13, complete sequence Length = 197348 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 434 agatacatatttaaatatgtggag 457 |||||||||| ||||||||||||| Sbjct: 129169 agatacatatataaatatgtggag 129146
>gb|AC011308.8| Homo sapiens BAC clone RP11-522N18 from 2, complete sequence Length = 124740 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 caaaagaggggaagaggcag 186 |||||||||||||||||||| Sbjct: 95284 caaaagaggggaagaggcag 95265
>gb|AC153613.9| Mus musculus 10 BAC RP23-23C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214432 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 agaggggaagaggcagacag 190 |||||||||||||||||||| Sbjct: 13046 agaggggaagaggcagacag 13065
>gb|AC153842.9| Mus musculus 6 BAC RP23-348K12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 174100 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 agaggggaagaggcagacag 190 |||||||||||||||||||| Sbjct: 137142 agaggggaagaggcagacag 137161
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 ccatggcgccgccgccgctt 542 |||||||||||||||||||| Sbjct: 85338 ccatggcgccgccgccgctt 85319
>emb|Z23494.1|HS199ZB12 H. sapiens (D1S421) DNA segment containing (CA) repeat; clone AFM199zb12; single read Length = 327 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 gagaaagggagaacaaaagagggg 177 |||||| ||||||||||||||||| Sbjct: 250 gagaaatggagaacaaaagagggg 273
>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5, complete sequence Length = 209796 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 agaaagggagaacaaaagag 174 |||||||||||||||||||| Sbjct: 197914 agaaagggagaacaaaagag 197895
>gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 103 of 118 of the complete sequence Length = 239049 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 434 agatacatatttaaatatgtggag 457 |||||||||| ||||||||||||| Sbjct: 104848 agatacatatataaatatgtggag 104825
>gb|AE003780.4| Drosophila melanogaster chromosome 3R, section 118 of 118 of the complete sequence Length = 256818 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cagaaagggagcaggaaaga 434 |||||||||||||||||||| Sbjct: 218794 cagaaagggagcaggaaaga 218775
>gb|U40367.1|HSGPDM16 Human glycerol-3-phosphate dehydrogenase (GPD2) gene, nuclear gene encoding mitochondrial protein, exon 17, and complete cds Length = 687 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 caaaagaggggaagaggcag 186 |||||||||||||||||||| Sbjct: 83 caaaagaggggaagaggcag 64
>emb|CT025633.3| Pan troglodytes chromosome X clone RP43-007L03 map Xq28, complete sequence Length = 205943 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 agagatacatatttaaatat 451 |||||||||||||||||||| Sbjct: 22845 agagatacatatttaaatat 22864
>emb|AL845503.5| Mouse DNA sequence from clone RP23-292G16 on chromosome 2, complete sequence Length = 148491 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 gaggggaagaggcagacaggaggaggaa 199 |||||||||||| ||| ||||||||||| Sbjct: 7565 gaggggaagaggaagaaaggaggaggaa 7592
>emb|AL672251.10| Mouse DNA sequence from clone RP23-16O15 on chromosome 2, complete sequence Length = 204214 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 aagggagcaggaaagagata 438 |||||||||||||||||||| Sbjct: 134146 aagggagcaggaaagagata 134165
>emb|AL928689.7| Mouse DNA sequence from clone RP23-35P3 on chromosome 2, complete sequence Length = 182529 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 ttaaatatgtggaggacaaa 463 |||||||||||||||||||| Sbjct: 17564 ttaaatatgtggaggacaaa 17545 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,765,558 Number of Sequences: 3902068 Number of extensions: 5765558 Number of successful extensions: 112464 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111579 Number of HSP's gapped (non-prelim): 879 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
