| Clone Name | rbags16a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB181484.1| Bromus inermis BiGP mRNA for glycoprotein, complete cds Length = 639 Score = 686 bits (346), Expect = 0.0 Identities = 417/440 (94%), Gaps = 2/440 (0%) Strand = Plus / Minus Query: 8 atatgaaatagtttcctgaaaacagttgtactaactctggctttaagaacactggaacat 67 |||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 576 atataaaataggttcctgaaaacagttgtactaattctgtctttaagaacactggaacat 517 Query: 68 agagcagatccaacttggaacaaaaaactcaacatgcaacatccactaaggtattctaag 127 ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 516 agagcagatccaacttggaacaaaaaactcaacatgc--catccaataagatattctaag 459 Query: 128 cagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatct 187 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 cagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcc 399 Query: 188 tagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaa 247 |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct: 398 tagccaacatgaccttgaacctatcaaagtcattcagggatgctcttctcttctggacaa 339 Query: 248 taagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcctccatgg 307 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 338 taagcttcttgccccatgagctgttctcccatttggttttaacatcagcttcctccatgg 279 Query: 308 ccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcagtcagtg 367 ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| | Sbjct: 278 ccttgatcaaagttgacttcttagggatacgcttgatgtcaatcttgatgtcagtcagcg 219 Query: 368 aaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtgcccggt 427 |||||||||||||||||||||||||||||| ||||||| |||| || || |||||||||| Sbjct: 218 aaagacgcttgaagttcatctggcacctgaccatatcaggagcatccacaagtgcccggt 159 Query: 428 tctggtcgacgacgtcgacg 447 |||||||||||||||||||| Sbjct: 158 tctggtcgacgacgtcgacg 139
>gb|U91834.1|TAU91834 Triticum aestivum root abundant protein mRNA, complete cds Length = 484 Score = 618 bits (312), Expect = e-174 Identities = 397/422 (94%), Gaps = 4/422 (0%) Strand = Plus / Plus Query: 23 ctgaaaacagttgtactaactctggctttaagaacactggaacatagagcagatccaact 82 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || Sbjct: 15 ctgaaaacagttgtactaattctggcttcaagaacactggaacatagagcagatcca-ct 73 Query: 83 tggaacaaaaaactcaacatgcaacatccactaaggtattctaagcagcaacctccttct 142 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 74 tggaacaaaaaactcaacatgt--catccactaagatattctaagcagcaacctccttct 131 Query: 143 tgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgacct 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 tgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgacct 191 Query: 203 tgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgcccc 262 |||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| Sbjct: 192 tgaacctgtcaaagtcattcagcgatgctcttctcttctggacaacaagcttcttacccc 251 Query: 263 aggagctgttctcccatttggttttcacatcagcttcctccatggccttgatcaaagttg 322 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 252 atgagctgttctcccatttggttttcacatcagcttcctccatggccttgatcaaagtgg 311 Query: 323 cctttttggggatacgcttgat-gtcaatcttgatgtcagtcagtgaaagacgcttgaag 381 |||| || ||||||||||||| ||||||||||||||| ||||| ||||||||||||||| Sbjct: 312 ccttcttaaggatacgcttgatagtcaatcttgatgtcggtcagcgaaagacgcttgaag 371 Query: 382 ttcatctggcacctgatcatatcangagcgtcgacgagtgcccggttctggtcgacgacg 441 |||||||||||||||| |||||| |||| || || |||||||||||||||||||| ||| Sbjct: 372 ttcatctggcacctgaccatatcgggagcatccacaagtgcccggttctggtcgacaacg 431 Query: 442 tc 443 || Sbjct: 432 tc 433
>ref|XM_466813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 405 Score = 325 bits (164), Expect = 7e-86 Identities = 268/303 (88%) Strand = Plus / Minus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacat 197 |||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 390 cttcttgagcttcgcaagctcttgcctgatagcacctcccctcttgatcttggccaacat 331 Query: 198 gaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttctt 257 ||||||||||||||||||||||| || || ||||| |||||||| ||||| |||||||| Sbjct: 330 aaccttgaacctgtcaaagtcattgagtgacgctctcctcttctggacaattagcttctt 271 Query: 258 gccccaggagctgttctcccatttggttttcacatcagcttcctccatggccttgatcaa 317 |||||| ||||| |||||||| ||| | || |||||||| |||||||| ||||| ||||| Sbjct: 270 gccccatgagctattctcccacttgttcttaacatcagcctcctccatagccttaatcaa 211 Query: 318 agttgcctttttggggatacgcttgatgtcaatcttgatgtcagtcagtgaaagacgctt 377 ||||| ||| || |||| ||| |||||||||||||||||||||||||| ||||| | ||| Sbjct: 210 agttgtcttcttcgggacacgtttgatgtcaatcttgatgtcagtcagggaaagcctctt 151 Query: 378 gaagttcatctggcacctgatcatatcangagcgtcgacgagtgcccggttctggtcgac 437 |||||| ||||||||||||| ||| ||| |||| || || |||||||||||||||||||| Sbjct: 150 gaagttgatctggcacctgaccatgtcaggagcatccacaagtgcccggttctggtcgac 91 Query: 438 gac 440 ||| Sbjct: 90 gac 88
>gb|AY104552.1| Zea mays PCO072862 mRNA sequence Length = 706 Score = 293 bits (148), Expect = 2e-76 Identities = 270/311 (86%) Strand = Plus / Minus Query: 137 ccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaaca 196 ||||||| |||||||| ||||||||||||||||||||||||||||| ||| | |||| || Sbjct: 465 ccttcttcagcttggcgagctcttgcctgatagcaccacccctcttgatccttgccagca 406 Query: 197 tgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttct 256 ||||||||||||||||||||||| | |||| || || |||||||| ||||| ||||||| Sbjct: 405 tgaccttgaacctgtcaaagtcactgagcgcagccctcctcttctggacaatcagcttct 346 Query: 257 tgccccaggagctgttctcccatttggttttcacatcagcttcctccatggccttgatca 316 ||||||| |||||||| ||||| || || |||||||||||||||||||| |||||||||| Sbjct: 345 tgccccatgagctgttttcccacttcgtcttcacatcagcttcctccatagccttgatca 286 Query: 317 aagttgcctttttggggatacgcttgatgtcaatcttgatgtcagtcagtgaaagacgct 376 |||| ||| ||||| | || ||||||||||||||||||||||| ||||| || || | Sbjct: 285 gggttgacttcttgggaacgcgtttgatgtcaatcttgatgtcagtaagtgagagccgtt 226 Query: 377 tgaagttcatctggcacctgatcatatcangagcgtcgacgagtgcccggttctggtcga 436 ||||||| ||||||||||||| ||||||| | ||||| || ||||||| ||||||||||| Sbjct: 225 tgaagttaatctggcacctgaccatatcaggggcgtccacaagtgccctgttctggtcga 166 Query: 437 cgacgtcgacg 447 | || |||||| Sbjct: 165 ccacatcgacg 155
>gb|AY108941.1| Zea mays PCO132326 mRNA sequence Length = 745 Score = 291 bits (147), Expect = 1e-75 Identities = 278/322 (86%) Strand = Plus / Minus Query: 126 agcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaat 185 ||||||| || |||| || ||||| |||||||||||||| || ||||| |||||||| || Sbjct: 542 agcagcagccacctttttaagcttagcaagctcttgcctaatggcaccgcccctcttgat 483 Query: 186 cttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaac 245 ||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| Sbjct: 482 cttcgccaacatgaccttgaacctgtcaaagtcattgagtgatgctctcctcttctgaac 423 Query: 246 aataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcctccat 305 ||| |||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||| Sbjct: 422 aatcagcttcttgccccatgagctattctcccacttgcttttcacatcagcttcctccat 363 Query: 306 ggccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcagtcag 365 |||||||||| || | ||| || |||| ||| || ||||||||||||||||||||||| Sbjct: 362 tgccttgatcagtgtagtcttctttgggacacgtttaatgtcaatcttgatgtcagtcag 303 Query: 366 tgaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtgcccg 425 ||||| |||||||||||||| ||||| | | ||| || | || || || || |||| Sbjct: 302 ggaaagccgcttgaagttcatttggcaacgaaccatgtcgggggcatcaacaagagccct 243 Query: 426 gttctggtcgacgacgtcgacg 447 |||||||||||||||||||||| Sbjct: 242 gttctggtcgacgacgtcgacg 221
>dbj|AK121631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050G01, full insert sequence Length = 677 Score = 274 bits (138), Expect = 2e-70 Identities = 278/325 (85%) Strand = Plus / Minus Query: 122 tctaagcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||| |||||| |||||||||| ||||| |||||||| || |||||||| || || | || Sbjct: 496 tctacgcagcagcctccttcttaagcttagcaagctcctgtctgatagcgccgccacgct 437 Query: 182 taatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttct 241 | ||||| |||||||| |||||||||||||||||||| || || |||||||| ||||||| Sbjct: 436 tgatcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttct 377 Query: 242 gaacaataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcct 301 | ||||| || ||||| ||||| |||||||||||||| ||| | |||||||||||||||| Sbjct: 376 ggacaatcagtttcttaccccatgagctgttctcccacttgttcttcacatcagcttcct 317 Query: 302 ccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcag 361 |||| ||||| ||||| || | ||| || |||| |||||||||||||||||| ||||||| Sbjct: 316 ccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatcttaatgtcag 257 Query: 362 tcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtg 421 |||| ||||| ||||||||||| |||||||| | || ||||||| | || || || |||| Sbjct: 256 tcagagaaagccgcttgaagtttatctggcagcggaccatatcaggggcatccacaagtg 197 Query: 422 cccggttctggtcgacgacgtcgac 446 ||| ||||||||||||||| ||||| Sbjct: 196 ccctgttctggtcgacgacatcgac 172
>dbj|AK109517.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-109-A02, full insert sequence Length = 2796 Score = 274 bits (138), Expect = 2e-70 Identities = 278/325 (85%) Strand = Plus / Minus Query: 122 tctaagcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||| |||||| |||||||||| ||||| |||||||| || |||||||| || || | || Sbjct: 495 tctacgcagcagcctccttcttaagcttagcaagctcctgtctgatagcgccgccacgct 436 Query: 182 taatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttct 241 | ||||| |||||||| |||||||||||||||||||| || || |||||||| ||||||| Sbjct: 435 tgatcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttct 376 Query: 242 gaacaataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcct 301 | ||||| || ||||| ||||| |||||||||||||| ||| | |||||||||||||||| Sbjct: 375 ggacaatcagtttcttaccccatgagctgttctcccacttgttcttcacatcagcttcct 316 Query: 302 ccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcag 361 |||| ||||| ||||| || | ||| || |||| |||||||||||||||||| ||||||| Sbjct: 315 ccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatcttaatgtcag 256 Query: 362 tcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtg 421 |||| ||||| ||||||||||| |||||||| | || ||||||| | || || || |||| Sbjct: 255 tcagagaaagccgcttgaagtttatctggcagcggaccatatcaggggcatccacaagtg 196 Query: 422 cccggttctggtcgacgacgtcgac 446 ||| ||||||||||||||| ||||| Sbjct: 195 ccctgttctggtcgacgacatcgac 171
>dbj|AK062092.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H03, full insert sequence Length = 661 Score = 274 bits (138), Expect = 2e-70 Identities = 278/325 (85%) Strand = Plus / Minus Query: 122 tctaagcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||| |||||| |||||||||| ||||| |||||||| || |||||||| || || | || Sbjct: 492 tctacgcagcagcctccttcttaagcttagcaagctcctgtctgatagcgccgccacgct 433 Query: 182 taatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttct 241 | ||||| |||||||| |||||||||||||||||||| || || |||||||| ||||||| Sbjct: 432 tgatcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttct 373 Query: 242 gaacaataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcct 301 | ||||| || ||||| ||||| |||||||||||||| ||| | |||||||||||||||| Sbjct: 372 ggacaatcagtttcttaccccatgagctgttctcccacttgttcttcacatcagcttcct 313 Query: 302 ccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcag 361 |||| ||||| ||||| || | ||| || |||| |||||||||||||||||| ||||||| Sbjct: 312 ccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatcttaatgtcag 253 Query: 362 tcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtg 421 |||| ||||| ||||||||||| |||||||| | || ||||||| | || || || |||| Sbjct: 252 tcagagaaagccgcttgaagtttatctggcagcggaccatatcaggggcatccacaagtg 193 Query: 422 cccggttctggtcgacgacgtcgac 446 ||| ||||||||||||||| ||||| Sbjct: 192 ccctgttctggtcgacgacatcgac 168
>ref|XM_473172.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 405 Score = 272 bits (137), Expect = 9e-70 Identities = 274/320 (85%) Strand = Plus / Minus Query: 127 gcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatc 186 |||||| |||||||||| ||||| |||||||| || |||||||| || || | ||| ||| Sbjct: 401 gcagcagcctccttcttaagcttagcaagctcctgtctgatagcgccgccacgcttgatc 342 Query: 187 ttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaaca 246 || |||||||| |||||||||||||||||||| || || |||||||| |||||||| ||| Sbjct: 341 ttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttctggaca 282 Query: 247 ataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcctccatg 306 || || ||||| ||||| |||||||||||||| ||| | |||||||||||||||||||| Sbjct: 281 atcagtttcttaccccatgagctgttctcccacttgttcttcacatcagcttcctccatt 222 Query: 307 gccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcagtcagt 366 ||||| ||||| || | ||| || |||| |||||||||||||||||| ||||||||||| Sbjct: 221 gccttaatcaaggtggtcttcttagggacacgcttgatgtcaatcttaatgtcagtcaga 162 Query: 367 gaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtgcccgg 426 ||||| ||||||||||| |||||||| | || ||||||| | || || || ||||||| | Sbjct: 161 gaaagccgcttgaagtttatctggcagcggaccatatcaggggcatccacaagtgccctg 102 Query: 427 ttctggtcgacgacgtcgac 446 |||||||||||||| ||||| Sbjct: 101 ttctggtcgacgacatcgac 82
>dbj|AK119791.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A03, full insert sequence Length = 617 Score = 252 bits (127), Expect = 8e-64 Identities = 276/325 (84%), Gaps = 2/325 (0%) Strand = Plus / Minus Query: 122 tctaagcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||| |||||| |||||||||| ||||| |||||||| || |||||||| || || | || Sbjct: 493 tctacgcagcagcctccttcttaagcttagcaagctcctgtctgatagcgccgccacgct 434 Query: 182 taatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttct 241 | ||||| |||||||| |||||||||||||||||||| || || |||||||| ||||||| Sbjct: 433 tgatcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttct 374 Query: 242 gaacaataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcct 301 | ||||| || ||||| ||||| |||||||||||||| ||| | |||||||||||||||| Sbjct: 373 ggacaatcagtttcttaccccatgagctgttctcccacttgttcttcacatcagcttcct 314 Query: 302 ccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatcttgatgtcag 361 |||| ||||| ||||| || | ||| || |||| |||||||||||||||||| ||||| Sbjct: 313 ccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatcttaatgtc-- 256 Query: 362 tcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgtcgacgagtg 421 |||| ||||| ||||||||||| |||||||| | || ||||||| | || || || |||| Sbjct: 255 tcagagaaagccgcttgaagtttatctggcagcggaccatatcaggggcatccacaagtg 196 Query: 422 cccggttctggtcgacgacgtcgac 446 ||| ||||||||||||||| ||||| Sbjct: 195 ccctgttctggtcgacgacatcgac 171
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 |||| |||||||| ||||| |||||||||| ||| || |||| ||| ||||||||||||| Sbjct: 24797814 cagcctcctccatagccttaatcaaagttgtcttcttcgggacacgtttgatgtcaatct 24797873 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgt 412 ||||||||||||| ||||| | ||||||||| ||||||||||||| ||| ||| |||| | Sbjct: 24797874 tgatgtcagtcagggaaagcctcttgaagttgatctggcacctgaccatgtcaggagcat 24797933 Query: 413 cgacgagtgcc 423 | || |||||| Sbjct: 24797934 ccacaagtgcc 24797944 Score = 109 bits (55), Expect = 8e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| Sbjct: 24797618 atcttggccaacataaccttgaacctgtcaaagtcattgagtgacgctctcctcttctgg 24797677 Query: 244 acaataagcttcttgccccaggagctgttctccca 278 ||||| |||||||||||||| ||||| |||||||| Sbjct: 24797678 acaattagcttcttgccccatgagctattctccca 24797712 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 8 atatgaaatagtttcctgaaaacagttgtactaactctggctttaagaacactggaacat 67 ||||||||||| |||| ||||||| ||||||| ||||||| ||||| || || ||||| Sbjct: 24797375 atatgaaataggttccattaaacagtagtactaattctggctctaagaccattgaaacat 24797434 Query: 68 agagcagatccaacttggaacaaaaaactcaacatg 103 | || ||||||||||||||| |||||||||||||| Sbjct: 24797435 attgctgatccaacttggaaccaaaaactcaacatg 24797470 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 24797492 cttcttgagcttcgcaagctcttgcctgatagcacctcccctct 24797535 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttggaacaaaaaactcaaca 101 |||||||||||||||||||| Sbjct: 16045222 ttggaacaaaaaactcaaca 16045241
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 |||| |||||||| ||||| |||||||||| ||| || |||| ||| ||||||||||||| Sbjct: 97462 cagcctcctccatagccttaatcaaagttgtcttcttcgggacacgtttgatgtcaatct 97521 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgt 412 ||||||||||||| ||||| | ||||||||| ||||||||||||| ||| ||| |||| | Sbjct: 97522 tgatgtcagtcagggaaagcctcttgaagttgatctggcacctgaccatgtcaggagcat 97581 Query: 413 cgacgagtgcc 423 | || |||||| Sbjct: 97582 ccacaagtgcc 97592 Score = 109 bits (55), Expect = 8e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| Sbjct: 97266 atcttggccaacataaccttgaacctgtcaaagtcattgagtgacgctctcctcttctgg 97325 Query: 244 acaataagcttcttgccccaggagctgttctccca 278 ||||| |||||||||||||| ||||| |||||||| Sbjct: 97326 acaattagcttcttgccccatgagctattctccca 97360 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 8 atatgaaatagtttcctgaaaacagttgtactaactctggctttaagaacactggaacat 67 ||||||||||| |||| ||||||| ||||||| ||||||| ||||| || || ||||| Sbjct: 97023 atatgaaataggttccattaaacagtagtactaattctggctctaagaccattgaaacat 97082 Query: 68 agagcagatccaacttggaacaaaaaactcaacatg 103 | || ||||||||||||||| |||||||||||||| Sbjct: 97083 attgctgatccaacttggaaccaaaaactcaacatg 97118 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 97140 cttcttgagcttcgcaagctcttgcctgatagcacctcccctct 97183
>dbj|AP006846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, fosmid clone:OSJNOa283G08 Length = 38265 Score = 119 bits (60), Expect = 8e-24 Identities = 113/131 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 |||| |||||||| ||||| |||||||||| ||| || |||| ||| ||||||||||||| Sbjct: 1178 cagcctcctccatagccttaatcaaagttgtcttcttcgggacacgtttgatgtcaatct 1237 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatcangagcgt 412 ||||||||||||| ||||| | ||||||||| ||||||||||||| ||| ||| |||| | Sbjct: 1238 tgatgtcagtcagggaaagcctcttgaagttgatctggcacctgaccatgtcaggagcat 1297 Query: 413 cgacgagtgcc 423 | || |||||| Sbjct: 1298 ccacaagtgcc 1308 Score = 109 bits (55), Expect = 8e-21 Identities = 85/95 (89%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| Sbjct: 982 atcttggccaacataaccttgaacctgtcaaagtcattgagtgacgctctcctcttctgg 1041 Query: 244 acaataagcttcttgccccaggagctgttctccca 278 ||||| |||||||||||||| ||||| |||||||| Sbjct: 1042 acaattagcttcttgccccatgagctattctccca 1076 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 8 atatgaaatagtttcctgaaaacagttgtactaactctggctttaagaacactggaacat 67 ||||||||||| |||| ||||||| ||||||| ||||||| ||||| || || ||||| Sbjct: 739 atatgaaataggttccattaaacagtagtactaattctggctctaagaccattgaaacat 798 Query: 68 agagcagatccaacttggaacaaaaaactcaacatg 103 | || ||||||||||||||| |||||||||||||| Sbjct: 799 attgctgatccaacttggaaccaaaaactcaacatg 834 Score = 71.9 bits (36), Expect = 2e-09 Identities = 42/44 (95%) Strand = Plus / Plus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctct 181 |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 856 cttcttgagcttcgcaagctcttgcctgatagcacctcccctct 899
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| |||||||||||||||||||| || || |||||||| |||||||| Sbjct: 104856 atcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttctgg 104915 Query: 244 acaataagcttcttgccccaggagctgttctcccatttggttttcacatc 293 ||||| || ||||| ||||| |||||||||||||| ||| | |||||||| Sbjct: 104916 acaatcagtttcttaccccatgagctgttctcccacttgttcttcacatc 104965 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 ||||||||||||| ||||| ||||| || | ||| || |||| ||||||||||||||||| Sbjct: 105043 cagcttcctccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatct 105102 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatca 405 | ||||||||||| ||||| ||||||||||| |||||||| | || ||||||| Sbjct: 105103 taatgtcagtcagagaaagccgcttgaagtttatctggcagcggaccatatca 105155
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| |||||||||||||||||||| || || |||||||| |||||||| Sbjct: 25725129 atcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttctgg 25725188 Query: 244 acaataagcttcttgccccaggagctgttctcccatttggttttcacatc 293 ||||| || ||||| ||||| |||||||||||||| ||| | |||||||| Sbjct: 25725189 acaatcagtttcttaccccatgagctgttctcccacttgttcttcacatc 25725238 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 ||||||||||||| ||||| ||||| || | ||| || |||| ||||||||||||||||| Sbjct: 25725316 cagcttcctccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatct 25725375 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatca 405 | ||||||||||| ||||| ||||||||||| |||||||| | || ||||||| Sbjct: 25725376 taatgtcagtcagagaaagccgcttgaagtttatctggcagcggaccatatca 25725428
>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence Length = 127712 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||| |||||||||||||||||||| || || |||||||| |||||||| Sbjct: 48056 atcttcgccaacataaccttgaacctgtcaaagtcgttgagggatgctctcctcttctgg 48115 Query: 244 acaataagcttcttgccccaggagctgttctcccatttggttttcacatc 293 ||||| || ||||| ||||| |||||||||||||| ||| | |||||||| Sbjct: 48116 acaatcagtttcttaccccatgagctgttctcccacttgttcttcacatc 48165 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Plus Query: 293 cagcttcctccatggccttgatcaaagttgcctttttggggatacgcttgatgtcaatct 352 ||||||||||||| ||||| ||||| || | ||| || |||| ||||||||||||||||| Sbjct: 48243 cagcttcctccattgccttaatcaaggtggtcttcttagggacacgcttgatgtcaatct 48302 Query: 353 tgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgatcatatca 405 | ||||||||||| ||||| ||||||||||| |||||||| | || ||||||| Sbjct: 48303 taatgtcagtcagagaaagccgcttgaagtttatctggcagcggaccatatca 48355
>ref|NM_127604.2| Arabidopsis thaliana structural constituent of ribosome AT2G20450 mRNA, complete cds Length = 642 Score = 99.6 bits (50), Expect = 8e-18 Identities = 137/166 (82%) Strand = Plus / Minus Query: 145 agcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgaccttg 204 ||||| |||||||| ||||| | | |||| ||||||| || || |||||||||| |||| Sbjct: 440 agcttagcaagctcctgcctcacaataccagccctcttgattttggccaacatgatcttg 381 Query: 205 aacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgccccag 264 ||||||||||| ||||| || | |||||||||||||| |||||||| ||| | ||||| Sbjct: 380 aacctgtcaaaatcattgagggcagctcttctcttctgcacaataagtttcctaccccat 321 Query: 265 gagctgttctcccatttggttttcacatcagcttcctccatggcct 310 || || |||||||| ||| | ||||||||||| | |||||| |||| Sbjct: 320 gaactcttctcccacttgttcttcacatcagccttctccattgcct 275
>gb|AY096618.1| Arabidopsis thaliana putative 60S ribosomal protein L14 (At2g20450) mRNA, complete cds Length = 436 Score = 99.6 bits (50), Expect = 8e-18 Identities = 137/166 (82%) Strand = Plus / Minus Query: 145 agcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgaccttg 204 ||||| |||||||| ||||| | | |||| ||||||| || || |||||||||| |||| Sbjct: 383 agcttagcaagctcctgcctcacaataccagccctcttgattttggccaacatgatcttg 324 Query: 205 aacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgccccag 264 ||||||||||| ||||| || | |||||||||||||| |||||||| ||| | ||||| Sbjct: 323 aacctgtcaaaatcattgagggcagctcttctcttctgcacaataagtttcctaccccat 264 Query: 265 gagctgttctcccatttggttttcacatcagcttcctccatggcct 310 || || |||||||| ||| | ||||||||||| | |||||| |||| Sbjct: 263 gaactcttctcccacttgttcttcacatcagccttctccattgcct 218
>gb|AY065368.1| Arabidopsis thaliana putative 60S ribosomal protein L14 (At2g20450) mRNA, complete cds Length = 672 Score = 99.6 bits (50), Expect = 8e-18 Identities = 137/166 (82%) Strand = Plus / Minus Query: 145 agcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgaccttg 204 ||||| |||||||| ||||| | | |||| ||||||| || || |||||||||| |||| Sbjct: 440 agcttagcaagctcctgcctcacaataccagccctcttgattttggccaacatgatcttg 381 Query: 205 aacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgccccag 264 ||||||||||| ||||| || | |||||||||||||| |||||||| ||| | ||||| Sbjct: 380 aacctgtcaaaatcattgagggcagctcttctcttctgcacaataagtttcctaccccat 321 Query: 265 gagctgttctcccatttggttttcacatcagcttcctccatggcct 310 || || |||||||| ||| | ||||||||||| | |||||| |||| Sbjct: 320 gaactcttctcccacttgttcttcacatcagccttctccattgcct 275
>emb|BX820403.1|CNS0A7WW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH2ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 580 Score = 99.6 bits (50), Expect = 8e-18 Identities = 137/166 (82%) Strand = Plus / Minus Query: 145 agcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgaccttg 204 ||||| |||||||| ||||| | | |||| ||||||| || || |||||||||| |||| Sbjct: 414 agcttagcaagctcctgcctcacaataccagccctcttgattttggccaacatgatcttg 355 Query: 205 aacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgccccag 264 ||||||||||| ||||| || | |||||||||||||| |||||||| ||| | ||||| Sbjct: 354 aacctgtcaaaatcattgagggcagctcttctcttctgcacaataagtttcctaccccat 295 Query: 265 gagctgttctcccatttggttttcacatcagcttcctccatggcct 310 || || |||||||| ||| | ||||||||||| | |||||| |||| Sbjct: 294 gaactcttctcccacttgttcttcacatcagccttctccattgcct 249
>gb|AY085447.1| Arabidopsis thaliana clone 15198 mRNA, complete sequence Length = 628 Score = 99.6 bits (50), Expect = 8e-18 Identities = 137/166 (82%) Strand = Plus / Minus Query: 145 agcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacatgaccttg 204 ||||| |||||||| ||||| | | |||| ||||||| || || |||||||||| |||| Sbjct: 440 agcttagcaagctcctgcctcacaataccagccctcttgattttggccaacatgatcttg 381 Query: 205 aacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttcttgccccag 264 ||||||||||| ||||| || | |||||||||||||| |||||||| ||| | ||||| Sbjct: 380 aacctgtcaaaatcattgagggcagctcttctcttctgcacaataagtttcctaccccat 321 Query: 265 gagctgttctcccatttggttttcacatcagcttcctccatggcct 310 || || |||||||| ||| | ||||||||||| | |||||| |||| Sbjct: 320 gaactcttctcccacttgttcttcacatcagccttctccattgcct 275
>ref|NM_118843.2| Arabidopsis thaliana structural constituent of ribosome AT4G27090 mRNA, complete cds Length = 668 Score = 89.7 bits (45), Expect = 7e-15 Identities = 150/185 (81%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaa 194 |||||||||||| || |||||||||||||||| | ||||| | |||| ||||| ||||| Sbjct: 457 ctccttcttgagttttgcaagctcttgcctgacaacaccagctttcttgatcttggccaa 398 Query: 195 catgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagctt 254 ||||| ||||||||| |||||||| || || || || | ||||| || |||||||| Sbjct: 397 catgatcttgaacctatcaaagtcgttaaggttagccctacgtttctgcacgataagctt 338 Query: 255 cttgccccaggagctgttctcccatttggttttcacatcagcttcctccatggccttgat 314 | | ||||| ||||| |||||||| ||| | ||||||||||| | ||||| |||| ||| Sbjct: 337 cctaccccatgagcttttctcccacttgttcttcacatcagccttttccattgcctcgat 278 Query: 315 caaag 319 ||||| Sbjct: 277 caaag 273
>gb|AY050473.1| Arabidopsis thaliana AT4g27090/T24A18_40 mRNA, complete cds Length = 405 Score = 89.7 bits (45), Expect = 7e-15 Identities = 150/185 (81%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaa 194 |||||||||||| || |||||||||||||||| | ||||| | |||| ||||| ||||| Sbjct: 393 ctccttcttgagttttgcaagctcttgcctgacaacaccagctttcttgatcttggccaa 334 Query: 195 catgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagctt 254 ||||| ||||||||| |||||||| || || || || | ||||| || |||||||| Sbjct: 333 catgatcttgaacctatcaaagtcgttaaggttagccctacgtttctgcacgataagctt 274 Query: 255 cttgccccaggagctgttctcccatttggttttcacatcagcttcctccatggccttgat 314 | | ||||| ||||| |||||||| ||| | ||||||||||| | ||||| |||| ||| Sbjct: 273 cctaccccatgagcttttctcccacttgttcttcacatcagccttttccattgcctcgat 214 Query: 315 caaag 319 ||||| Sbjct: 213 caaag 209
>gb|AF378869.1|AF378869 Arabidopsis thaliana AT4g27090/T24A18_40 mRNA, complete cds Length = 619 Score = 89.7 bits (45), Expect = 7e-15 Identities = 150/185 (81%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaa 194 |||||||||||| || |||||||||||||||| | ||||| | |||| ||||| ||||| Sbjct: 456 ctccttcttgagttttgcaagctcttgcctgacaacaccagctttcttgatcttggccaa 397 Query: 195 catgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagctt 254 ||||| ||||||||| |||||||| || || || || | ||||| || |||||||| Sbjct: 396 catgatcttgaacctatcaaagtcgttaaggttagccctacgtttctgcacgataagctt 337 Query: 255 cttgccccaggagctgttctcccatttggttttcacatcagcttcctccatggccttgat 314 | | ||||| ||||| |||||||| ||| | ||||||||||| | ||||| |||| ||| Sbjct: 336 cctaccccatgagcttttctcccacttgttcttcacatcagccttttccattgcctcgat 277 Query: 315 caaag 319 ||||| Sbjct: 276 caaag 272
>gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map mi148, complete sequence Length = 52784 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/104 (84%) Strand = Plus / Minus Query: 190 gccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaata 249 |||||||||| ||||||||||||||| ||||| || | |||||||||||||| |||||| Sbjct: 8195 gccaacatgatcttgaacctgtcaaaatcattgagggcagctcttctcttctgcacaata 8136 Query: 250 agcttcttgccccaggagctgttctcccatttggttttcacatc 293 || ||| | ||||| || || |||||||| ||| | |||||||| Sbjct: 8135 agtttcctaccccatgaactcttctcccacttgttcttcacatc 8092
>emb|BX826370.1|CNS0A41L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB1ZE11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 583 Score = 79.8 bits (40), Expect = 7e-12 Identities = 73/84 (86%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaa 194 |||||||||||| || |||||||||||||||| | ||||| | |||| ||||| ||||| Sbjct: 458 ctccttcttgagttttgcaagctcttgcctgacaacaccagctttcttgatcttggccaa 399 Query: 195 catgaccttgaacctgtcaaagtc 218 ||||| ||||||||| |||||||| Sbjct: 398 catgatcttgaacctatcaaagtc 375
>gb|BT014554.1| Lycopersicon esculentum clone 133982F, mRNA sequence Length = 580 Score = 77.8 bits (39), Expect = 3e-11 Identities = 129/159 (81%) Strand = Plus / Minus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacat 197 |||||||||||| |||||||| || || | | | ||| | ||||||||||| |||| ||| Sbjct: 422 cttcttgagcttagcaagctcctgtctcacaactccagctctcttaatctttgccagcat 363 Query: 198 gaccttgaacctgtcaaagtcattcagcgatgctcttctcttctgaacaataagcttctt 257 | ||||||||||||||| || || || | ||||| |||||||| || || | |||| | Sbjct: 362 aagcttgaacctgtcaaaatcgttaagtgcagctctcctcttctgcactatcaacttcct 303 Query: 258 gccccaggagctgttctcccatttggttttcacatcagc 296 ||||| || ||||||||||| ||||| ||||||||||| Sbjct: 302 tccccatgaactgttctcccacttggtcttcacatcagc 264 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 340 ttgatgtcaatcttgatgtcagtcagtgaaagacgcttgaagttcatctggc 391 ||||||||||| ||||| || || |||||||| | ||||||||||||||||| Sbjct: 220 ttgatgtcaattttgatatctgtaagtgaaagcctcttgaagttcatctggc 169
>gb|DQ191666.1| Solanum tuberosum glycoprotein-like protein mRNA, complete cds Length = 628 Score = 75.8 bits (38), Expect = 1e-10 Identities = 146/182 (80%) Strand = Plus / Minus Query: 124 taagcagcaacctccttcttgagcttggcaagctcttgcctgatagcaccacccctctta 183 ||||| ||||||||||| || ||||| |||||||| || || | ||||| ||||||| Sbjct: 431 taagctgcaacctcctttttaagctttgcaagctcctgtctcaccacaccagccctcttg 372 Query: 184 atcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctcttctga 243 ||||| |||||||||| ||| ||||| ||||| ||||| || || || || || ||||| Sbjct: 371 atctttgccaacatgagcttaaacctatcaaaatcattgagtgaggccctccttttctgc 312 Query: 244 acaataagcttcttgccccaggagctgttctcccatttggttttcacatcagcttcctcc 303 || || | |||| | |||||||| ||| |||||| ||||| ||||||||||| ||||| Sbjct: 311 acgatcaacttccttccccaggaactggactcccacttggtcttcacatcagcagcctcc 252 Query: 304 at 305 || Sbjct: 251 at 250 Score = 61.9 bits (31), Expect = 2e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 339 cttgatgtcaatcttgatgtcagtcagtgaaagacgcttgaagttcatctggcacctgat 398 ||||||||| |||||||| || || |||||||| | ||||||||||||||||| ||| | Sbjct: 216 cttgatgtcgatcttgatatctgtgagtgaaagcctcttgaagttcatctggctcctcac 157 Query: 399 catatcangagcgtcgacgagtgcccggttctggtcga 436 ||| ||| |||| || || || |||| ||| ||||||| Sbjct: 156 catgtcaggagcatcaacaagagccctgttttggtcga 119
>dbj|AB008846.1| Cucumis sativus Csf-1 mRNA, partial cds Length = 678 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Minus Query: 176 ccctcttaatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttc 235 ||||||||||||| |||||||| | ||||||||| || |||||||| || || ||||||| Sbjct: 367 ccctcttaatcttcgccaacataagcttgaacctatcgaagtcattgagtgaggctcttc 308 Query: 236 tcttctgaacaataagcttcttgccccaggagctgttctcccattt 281 |||||| ||| || | || ||||||| ||||| ||||||||||| Sbjct: 307 tcttcttaacgatcaattttctgccccaagagctattctcccattt 262
>emb|BX818834.1|CNS0A8VC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB17ZH01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 586 Score = 71.9 bits (36), Expect = 2e-09 Identities = 114/140 (81%) Strand = Plus / Minus Query: 171 accacccctcttaatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgc 230 |||| ||||||| || || |||||||||| ||||||||||||||| ||||| || | || Sbjct: 355 accagccctcttgattttggccaacatgatcttgaacctgtcaaaatcattgagggcagc 296 Query: 231 tcttctcttctgaacaataagcttcttgccccaggagctgttctcccatttggttttcac 290 |||| ||||||||| |||||| ||| | ||||| || || || ||||| ||| | || || Sbjct: 295 tcttttcttctgaaaaataagtttcctaccccatgaactcttttcccacttgttcttaac 236 Query: 291 atcagcttcctccatggcct 310 |||||| | |||||| |||| Sbjct: 235 atcagccttctccattgcct 216
>dbj|AB182935.1| Citrullus lanatus mRNA for Csf-1 protein, partial cds Length = 536 Score = 61.9 bits (31), Expect = 2e-06 Identities = 90/107 (84%), Gaps = 2/107 (1%) Strand = Plus / Minus Query: 176 ccctcttaatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttc 235 ||||||||||||| |||||||| | |||||||| ||| |||||||| || || ||||||| Sbjct: 230 ccctcttaatcttcgccaacataagcttgaaccggtcgaagtcattgagtgaggctcttc 171 Query: 236 tcttctgaacaat-aagcttcttgccccaggagctgttctcccattt 281 | | || |||||| || ||||| ||||| ||||| ||||||||||| Sbjct: 170 tttgcttaacaatcaattttctt-ccccaagagctattctcccattt 125
>gb|U78952.1|PSU78952 Pisum sativum hydroxyproline rich glycoprotein PsHRGP1 mRNA, partial cds Length = 1013 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Minus Query: 138 cttcttgagcttggcaagctcttgcctgatagcaccacccctcttaatcttagccaacat 197 |||||| ||||| |||||||||||||| | | || | ||||||| ||||| |||||||| Sbjct: 784 cttcttcagcttagcaagctcttgcctaacaccagctgccctcttgatctttgccaacat 725 Query: 198 gaccttgaacctgtcaaagtcatt 221 | ||||||||| ||||| ||||| Sbjct: 724 tatcttgaacctatcaaaatcatt 701
>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence Length = 127189 Score = 52.0 bits (26), Expect = 0.002 Identities = 92/114 (80%) Strand = Plus / Plus Query: 180 cttaatcttagccaacatgaccttgaacctgtcaaagtcattcagcgatgctcttctctt 239 ||||||||| |||||||| | ||||||||| ||||| || || || | || || ||||| Sbjct: 5855 cttaatctttgccaacataatcttgaacctatcaaaatcgttaagggcagccctcctctt 5914 Query: 240 ctgaacaataagcttcttgccccaggagctgttctcccatttggttttcacatc 293 || |||||| | ||| | ||||||||||| |||||||| ||| | |||||||| Sbjct: 5915 cttaacaatcaatttccttccccaggagctcttctcccacttgttcttcacatc 5968
>gb|AY519976.1| Chara globularis 60S ribosomal protein L14 mRNA, complete cds Length = 1027 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 195 catgaccttgaacctgtcaaagtc 218 |||||||||||||||||||||||| Sbjct: 422 catgaccttgaacctgtcaaagtc 399
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 135 ctccttcttgagcttggcaagctcttgcctga 166 |||||||||||| || |||||||||||||||| Sbjct: 97971 ctccttcttgagttttgcaagctcttgcctga 98002
>emb|AL035680.1|ATT24A18 Arabidopsis thaliana DNA chromosome 4, BAC clone T24A18, partial sequence (ESSA project) Length = 45980 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 135 ctccttcttgagcttggcaagctcttgcctga 166 |||||||||||| || |||||||||||||||| Sbjct: 14460 ctccttcttgagttttgcaagctcttgcctga 14491
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctctt 160 ||||||||| |||||||||||||||| Sbjct: 31098 ctccttcttcagcttggcaagctctt 31073
>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete sequence Length = 178963 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 tagccaacatgaccttgaacct 209 |||||||||||||||||||||| Sbjct: 17124 tagccaacatgaccttgaacct 17145
>gb|AC087262.2| Rattus norvegicus strain Brown Norway clone RP31-151E23, complete sequence Length = 132809 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 188 tagccaacatgaccttgaacct 209 |||||||||||||||||||||| Sbjct: 102852 tagccaacatgaccttgaacct 102873
>ref|XM_762138.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_113_8886_10016) partial mRNA Length = 1131 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 ctccatggccttgatcaaagt 320 ||||||||||||||||||||| Sbjct: 438 ctccatggccttgatcaaagt 418
>gb|AC068327.14| Homo sapiens chromosome 15, clone RP11-394G8, complete sequence Length = 177539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gatgctcttctcttctgaaca 246 ||||||||||||||||||||| Sbjct: 160039 gatgctcttctcttctgaaca 160019
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gatgctcttctcttctgaaca 246 ||||||||||||||||||||| Sbjct: 38923 gatgctcttctcttctgaaca 38903
>gb|AC150799.4| Medicago truncatula chromosome 2 BAC clone mth2-47j13, complete sequence Length = 119159 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 cttgatgtcaatcttgatgtc 359 ||||||||||||||||||||| Sbjct: 18194 cttgatgtcaatcttgatgtc 18174
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 aacaaaaaactcaacatgcaa 106 ||||||||||||||||||||| Sbjct: 16867636 aacaaaaaactcaacatgcaa 16867616
>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete sequence Length = 147452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 aacaaaaaactcaacatgcaa 106 ||||||||||||||||||||| Sbjct: 52088 aacaaaaaactcaacatgcaa 52068
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 aacaaaaaactcaacatgcaa 106 ||||||||||||||||||||| Sbjct: 16876676 aacaaaaaactcaacatgcaa 16876656
>gb|BC088134.1| Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 2, mRNA (cDNA clone MGC:108672 IMAGE:7326035), complete cds Length = 1297 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttggcaagctcttgcctgat 167 |||||||||||||||||||| Sbjct: 795 ttggcaagctcttgcctgat 776
>ref|XM_465573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 12573 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ttggaacaaaaaactcaaca 101 |||||||||||||||||||| Sbjct: 5239 ttggaacaaaaaactcaaca 5220
>ref|NM_012910.1| Rattus norvegicus arrestin, beta 1 (Arrb1), mRNA Length = 1357 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 catcagcttcctccatggcc 309 |||||||||||||||||||| Sbjct: 813 catcagcttcctccatggcc 794
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 gatccaacttggaacaaaaa 93 |||||||||||||||||||| Sbjct: 327121 gatccaacttggaacaaaaa 327140
>emb|CR392366.4| Zebrafish DNA sequence from clone DKEY-51D17 in linkage group 9, complete sequence Length = 125898 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aaatagtttcctgaaaacag 32 |||||||||||||||||||| Sbjct: 114591 aaatagtttcctgaaaacag 114610
>ref|XM_775639.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC575222 (LOC575222), mRNA Length = 9627 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 caacatgaccttgaacctgt 211 |||||||||||||||||||| Sbjct: 684 caacatgaccttgaacctgt 703
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tgccccaggagctgttctcc 276 |||||||||||||||||||| Sbjct: 4775331 tgccccaggagctgttctcc 4775312
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 ctccttcttgagcttggcaagctc 158 ||||||||| |||||||||||||| Sbjct: 1772928 ctccttcttcagcttggcaagctc 1772905
>ref|NM_060259.2| Caenorhabditis elegans MUTator family member (mut-16) (mut-16) mRNA, complete cds Length = 3096 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tctaagcagcaacctccttc 141 |||||||||||||||||||| Sbjct: 1702 tctaagcagcaacctccttc 1721
>ref|NM_060260.4| Caenorhabditis elegans MUTator family member (mut-16) (mut-16) mRNA, complete cds Length = 3270 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tctaagcagcaacctccttc 141 |||||||||||||||||||| Sbjct: 1693 tctaagcagcaacctccttc 1712
>ref|XM_392767.2| PREDICTED: Apis mellifera similar to CG15385-PA (LOC409244), mRNA Length = 1557 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 tttggttttcacatcagctt 298 |||||||||||||||||||| Sbjct: 207 tttggttttcacatcagctt 188
>ref|NM_024391.1| Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 2 (Hsd17b2), mRNA Length = 1289 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttggcaagctcttgcctgat 167 |||||||||||||||||||| Sbjct: 804 ttggcaagctcttgcctgat 785
>gb|DQ212782.1| Leptospira interrogans insertion sequences IS1500E and IS1501C ORFAB (orfAB) and ORFA (orfA) genes, complete cds; and disrupted leucine repeat protein (lrr) gene, partial sequence Length = 6536 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 ctcttctcttctgaacaataagct 253 |||||||||| ||||||||||||| Sbjct: 4609 ctcttctcttttgaacaataagct 4586
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ctgtcaaagtcattcagcga 227 |||||||||||||||||||| Sbjct: 618119 ctgtcaaagtcattcagcga 618138
>dbj|AP004852.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1371_D04 Length = 105468 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttggaacaaaaaactcaaca 101 |||||||||||||||||||| Sbjct: 76157 ttggaacaaaaaactcaaca 76176
>dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0403C01 Length = 145635 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ttggaacaaaaaactcaaca 101 |||||||||||||||||||| Sbjct: 43456 ttggaacaaaaaactcaaca 43475
>emb|X91234.1|RN17BHDT2 R.norvegicus mRNA for 17-beta hydroxysteroid dehydrogenase type 2 Length = 1289 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ttggcaagctcttgcctgat 167 |||||||||||||||||||| Sbjct: 804 ttggcaagctcttgcctgat 785
>emb|Z83316.1|CEB0379 Caenorhabditis elegans Cosmid B0379, complete sequence Length = 40339 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tctaagcagcaacctccttc 141 |||||||||||||||||||| Sbjct: 15926 tctaagcagcaacctccttc 15945
>gb|M91589.1|RATBARRES1 Rat beta-arrestin1 mRNA, complete cds Length = 1357 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 catcagcttcctccatggcc 309 |||||||||||||||||||| Sbjct: 813 catcagcttcctccatggcc 794
>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete sequence Length = 209914 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 tggctttaagaacactggaacata 68 ||||||||||||||||| |||||| Sbjct: 76463 tggctttaagaacactgtaacata 76440 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,440,614 Number of Sequences: 3902068 Number of extensions: 4440614 Number of successful extensions: 91467 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 91132 Number of HSP's gapped (non-prelim): 328 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)