ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15l05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M74077.1|WHTUBICP T.aestivum ubiquitin carrier protein mRNA 117 5e-24

>gb|M74077.1|WHTUBICP T.aestivum ubiquitin carrier protein mRNA
          Length = 802

 Score =  117 bits (59), Expect = 5e-24
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                       
Query: 13  aatggaaaatntacaggggagaagngaaattgctagtgtcggatggacattcggagatcg 72
           |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| 
Sbjct: 678 aatggaaaatatacaggggagaagtgaaattgctagtgtcggatggacatttggagatca 619

                              
Query: 73  acagcananccctccacac 91
           |||||| | ||||||||||
Sbjct: 618 acagcaaaaccctccacac 600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,337
Number of Sequences: 3902068
Number of extensions: 202337
Number of successful extensions: 7509
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7508
Number of HSP's gapped (non-prelim): 1
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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