ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15k20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPDA_PSEPK (Q88FC9) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 30 1.6
2CASC5_MOUSE (Q66JQ7) Protein CASC5 (Cancer susceptibility candid... 29 2.7
3Y661_METJA (Q58075) Hypothetical protein MJ0661 29 3.5
4GPDA_PSESM (Q883Y4) Glycerol-3-phosphate dehydrogenase [NAD(P)+]... 29 3.5
5TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic li... 28 7.8
6PQQF_PSESM (Q88A79) Coenzyme PQQ synthesis protein F (EC 3.4.99.... 28 7.8

>GPDA_PSEPK (Q88FC9) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 341

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 32  QVLHQLSPTKRREVHTPPNCTAKLTSHAFSSTVXAS 139
           Q+L +++P  R  V + PN   ++  HA ++TV AS
Sbjct: 120 QILEEIAPEARIGVLSGPNLAREIAEHALTATVVAS 155



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>CASC5_MOUSE (Q66JQ7) Protein CASC5 (Cancer susceptibility candidate gene 5|
            protein homolog)
          Length = 1612

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = -1

Query: 197  LGFRRXEDAESVNRSSDKVTKQXPLKRKRER*AWRYSLGEYEPPCASSAIVGAAPVDNIE 18
            LG R   D ES    ++  T   PLK   +    R SLG + P   S        VD++E
Sbjct: 1428 LGSRNDRDEESKTFCNEAETTSVPLKTAVKDKTRRCSLGIFLPKLPSKRSCSITGVDDLE 1487

Query: 17   SML 9
             +L
Sbjct: 1488 QIL 1490



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>Y661_METJA (Q58075) Hypothetical protein MJ0661|
          Length = 182

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 278 YCAGRYITDIGVRKDVAKVXVENLPSHLGFRRXEDAESVNRSSDKVTKQXPLKRKRE 108
           YC G Y+ D  V  +  K   E +  +LGF    D E   R+ +++ ++    RK++
Sbjct: 126 YCRGLYLGDGKVEDEYFKYA-ELVLKYLGFEEGVDEEEFKRAKERLLEESLKYRKKK 181



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>GPDA_PSESM (Q883Y4) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)|
           (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)
          Length = 341

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 32  QVLHQLSPTKRREVHTPPNCTAKLTSHAFSSTVXAS 139
           Q+L ++ P  R  V + PN   ++  HA ++TV AS
Sbjct: 120 QILEEIVPQARIGVLSGPNLAREIAEHALTATVVAS 155



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>TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic lineage switch|
           protein 5)
          Length = 493

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 93  PPSSPLTLSLQRXLLRHLV*ASVHRFRIFRTAETEVRWQVFHLHFGHILSYSYVG 257
           P +SPL L++ R L   L          F  AE       FH  FG +  Y Y+G
Sbjct: 415 PATSPLVLAIPRRLRVEL--ECEEGELSFYDAERHCHLYTFHARFGEVRPYFYLG 467



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>PQQF_PSESM (Q88A79) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)|
           (Pyrroloquinoline quinone biosynthesis protein F)
          Length = 779

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 89  SLGEYEPPCASSAIVGAAPVDNIESML 9
           +L E      S+A++G+APVDN++S L
Sbjct: 381 ALRELLEQLTSNALIGSAPVDNLDSTL 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,821,887
Number of Sequences: 219361
Number of extensions: 606241
Number of successful extensions: 1736
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1736
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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