ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15k20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
2dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
3dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
4dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
5dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
6gb|AY110920.1| Zea mays CL34388_1 mRNA sequence 54 3e-04
7ref|XM_483638.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.016
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
9dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
10dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.016
11gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, co... 40 3.9
12gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosom... 40 3.9
13gb|AE006024.1| Caulobacter crescentus CB15 section 350 of 359 of... 40 3.9
14dbj|AK053698.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 3.9 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                     
Query: 229      gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
                |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 20305004 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacat 20305056



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 102      tcacctctcacgctttctcttca 124
                |||||||||||||||||||||||
Sbjct: 20304877 tcacctctcacgctttctcttca 20304899
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1439_F07
          Length = 153743

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                  
Query: 229   gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
             |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 84131 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacat 84183



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 102   tcacctctcacgctttctcttca 124
             |||||||||||||||||||||||
Sbjct: 84004 tcacctctcacgctttctcttca 84026
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>dbj|AK105121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-B12, full
           insert sequence
          Length = 1099

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                
Query: 229 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
           |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 762 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacat 710



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 102 tcacctctcacgctttctcttca 124
           |||||||||||||||||||||||
Sbjct: 889 tcacctctcacgctttctcttca 867
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>dbj|AK072174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135P13, full
            insert sequence
          Length = 3195

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                 
Query: 229  gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 2668 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacat 2616



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 102  tcacctctcacgctttctcttca 124
            |||||||||||||||||||||||
Sbjct: 2795 tcacctctcacgctttctcttca 2773
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>dbj|AK060048.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H07, full
           insert sequence
          Length = 1044

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                
Query: 229 gccacatcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
           |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 758 gccacatcctttcttactcctatgtcagtgatgtatctaccagcacagtacat 706



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 102 tcacctctcacgctttctcttca 124
           |||||||||||||||||||||||
Sbjct: 885 tcacctctcacgctttctcttca 863
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>gb|AY110920.1| Zea mays CL34388_1 mRNA sequence
          Length = 598

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 235 tcctttcttactcctatgtcggtgatgtatctaccggcacagtacat 281
           ||||| |||||||||||||| || |||||||| || |||||||||||
Sbjct: 221 tccttccttactcctatgtcagtaatgtatctgccagcacagtacat 175
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>ref|XM_483638.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                       
Query: 207 caggttttccacctncactttggccacatcctttcttactcctatgtcggtgatgtatct 266
           |||||| ||||||| ||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 759 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 700

                          
Query: 267 accggcacagtacat 281
            ||||| ||||||||
Sbjct: 699 gccggcgcagtacat 685
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                            
Query: 207      caggttttccacctncactttggccacatcctttcttactcctatgtcggtgatgtatct 266
                |||||| ||||||| ||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 27386430 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 27386489

                               
Query: 267      accggcacagtacat 281
                 ||||| ||||||||
Sbjct: 27386490 gccggcgcagtacat 27386504
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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 207   caggttttccacctncactttggccacatcctttcttactcctatgtcggtgatgtatct 266
             |||||| ||||||| ||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 13225 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 13284

                            
Query: 267   accggcacagtacat 281
              ||||| ||||||||
Sbjct: 13285 gccggcgcagtacat 13299
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 207   caggttttccacctncactttggccacatcctttcttactcctatgtcggtgatgtatct 266
             |||||| ||||||| ||| ||| | || ||||| || || || |||||||||||||| ||
Sbjct: 87957 caggttctccacctccaccttgacgacgtccttcctcaccccgatgtcggtgatgtacct 88016

                            
Query: 267   accggcacagtacat 281
              ||||| ||||||||
Sbjct: 88017 gccggcgcagtacat 88031
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>gb|AC113977.16| Mus musculus chromosome 1, clone RP23-161E13, complete sequence
          Length = 235738

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tcaccttgtctgagcttctg 159
              ||||||||||||||||||||
Sbjct: 154420 tcaccttgtctgagcttctg 154401
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>gb|AC122411.4| Mus musculus BAC clone RP24-143P19 from chromosome 1, complete
            sequence
          Length = 182658

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  tcaccttgtctgagcttctg 159
            ||||||||||||||||||||
Sbjct: 4796 tcaccttgtctgagcttctg 4777
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>gb|AE006024.1| Caulobacter crescentus CB15 section 350 of 359 of the complete genome
          Length = 11264

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   atcgccgacgaagcgcaggg 68
            ||||||||||||||||||||
Sbjct: 4438 atcgccgacgaagcgcaggg 4457
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>dbj|AK053698.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130208O22 product:unclassifiable, full
            insert sequence
          Length = 2993

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  tcaccttgtctgagcttctg 159
            ||||||||||||||||||||
Sbjct: 1210 tcaccttgtctgagcttctg 1191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,532,392
Number of Sequences: 3902068
Number of extensions: 1532392
Number of successful extensions: 22760
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22724
Number of HSP's gapped (non-prelim): 36
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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