ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2 30 5.3

>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2|
          Length = 525

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = -2

Query: 423 LEDKEGEHMTKEVQREVESAVKRKTNGKAPKIILD*LIQSESRTMVLCKPVGLKSSHSCP 244
           L   E E + KE++R  E   KRK +  A K       +     +VLCK   L S+ SCP
Sbjct: 299 LHPNEDEELMKEMERTREEFQKRKADLLAAKR------KPVQTGIVLCKFGALCSNPSCP 352

Query: 243 F 241
           F
Sbjct: 353 F 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,538,035
Number of Sequences: 219361
Number of extensions: 1550179
Number of successful extensions: 4283
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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