ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15k05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479151.1| Oryza sativa (japonica cultivar-group), mRNA 196 7e-47
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 196 7e-47
3dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic D... 196 7e-47
4dbj|AK111336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 7e-47
5gb|AY104391.1| Zea mays PCO073745 mRNA sequence 139 1e-29
6gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 92 3e-15
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 92 3e-15
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
9dbj|AK062571.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
10emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L... 46 0.15
11gb|AF419981.1|AF419981 Drosophila yakuba defective chorion-1 fc1... 44 0.61
12gb|AF419980.1|AF419980 Drosophila yakuba defective chorion-1 fc1... 44 0.61
13gb|AF419979.1|AF419979 Drosophila yakuba defective chorion-1 fc1... 44 0.61
14emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 i... 44 0.61
15emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 i... 42 2.4
16ref|XM_677758.1| PREDICTED: Danio rerio similar to trinucleotide... 42 2.4
17gb|AY702083.1| Oikopleura dioica homeodomain protein NK2a (NK2a)... 42 2.4
18gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 40 9.5
19gb|AE006423.1| Lactococcus lactis subsp. lactis IL1403 section 1... 40 9.5
20gb|AF154094.1| Uncultured hydrocarbon seep bacterium BPC065 16S ... 40 9.5
21gb|AY484743.1| Uncultured bacterium clone 99917 16S ribosomal RN... 40 9.5
22gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosom... 40 9.5
23gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, com... 40 9.5
24gb|CP000088.1| Thermobifida fusca YX, complete genome 40 9.5
25emb|AL589744.18| Mouse DNA sequence from clone RP23-80C18 on chr... 40 9.5
26gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, comple... 40 9.5
27gb|DQ394922.1| Uncultured bacterium clone VHS-B1-47 16S ribosoma... 40 9.5
28gb|DQ394901.1| Uncultured delta proteobacterium clone VHS-B1-26 ... 40 9.5
29gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, co... 40 9.5
30gb|AC083814.17|AC083814 Mus musculus 7 BAC RP23-129J16 (Roswell ... 40 9.5
31gb|AC080015.15|AC080015 Mus musculus 7 BAC RP23-163B17 (RPCI Mou... 40 9.5
32emb|AJ582703.1|UDE582703 Uncultured Desulfobacteraceae bacterium... 40 9.5
33gb|AE000657.1| Aquifex aeolicus VF5, complete genome 40 9.5
34gb|AC005242.1|AC005242 Homo sapiens chromosome 17, clone hRPK.11... 40 9.5
35gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, comple... 40 9.5
36gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome... 40 9.5 
>ref|XM_479151.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1362

 Score =  196 bits (99), Expect = 7e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311
            |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982

                                                                        
Query: 312  atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371
            |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 981  atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922

                                                                        
Query: 372  aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431
            |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 921  aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862

                                                           
Query: 432  agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478
            || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 861  agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 89/105 (84%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 591 gtttgaagtacaaccatgctttgtgtactctgaaagaacactattctctatgcttaattt 650
           ||||||||||  ||||||||  |||||||||||| |||  ||||| |  ||||||| |||
Sbjct: 696 gtttgaagtaggaccatgctc-gtgtactctgaaggaatgctattttgaatgcttagttt 638

                                                        
Query: 651 tatcacctttctctccagttgtttgtctgcagaaagccatgcctt 695
            | |||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 637 caccacctttctctccagttgcttgtcagaagaaagccatgcctt 593



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 543 ttgtgtcctttcggtttctgcttgactttttgtgctgc 580
           ||||| |||||| ||||||||||||| |||||||||||
Sbjct: 750 ttgtgacctttcagtttctgcttgaccttttgtgctgc 713
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  196 bits (99), Expect = 7e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                            
Query: 252      cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311
                |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 25251774 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 25251715

                                                                            
Query: 312      atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371
                |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 25251714 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 25251655

                                                                            
Query: 372      aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431
                |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 25251654 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 25251595

                                                               
Query: 432      agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478
                || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 25251594 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 25251548



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 653      tcacctttctctccagttgtttgtctgcagaaagccatgcctt 695
                ||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 25250214 tcacctttctctccagttgcttgtcagaagaaagccatgcctt 25250172
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>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0616D06
          Length = 153800

 Score =  196 bits (99), Expect = 7e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                         
Query: 252   cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311
             |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 68445 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 68386

                                                                         
Query: 312   atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371
             |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 68385 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 68326

                                                                         
Query: 372   aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431
             |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 68325 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 68266

                                                            
Query: 432   agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478
             || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 68265 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 68219



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 653   tcacctttctctccagttgtttgtctgcagaaagccatgcctt 695
             ||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 66885 tcacctttctctccagttgcttgtcagaagaaagccatgcctt 66843
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>dbj|AK111336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F03, full
            insert sequence
          Length = 1362

 Score =  196 bits (99), Expect = 7e-47
 Identities = 195/227 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311
            |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| |
Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982

                                                                        
Query: 312  atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371
            |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 981  atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922

                                                                        
Query: 372  aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431
            |||||||| || | |||||||||||| ||  | ||||| ||||  ||||  |||||||||
Sbjct: 921  aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862

                                                           
Query: 432  agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478
            || || ||| | ||||| ||||| |||| |||||| ||| |||||||
Sbjct: 861  agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 89/105 (84%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 591 gtttgaagtacaaccatgctttgtgtactctgaaagaacactattctctatgcttaattt 650
           ||||||||||  ||||||||  |||||||||||| |||  ||||| |  ||||||| |||
Sbjct: 696 gtttgaagtaggaccatgctc-gtgtactctgaaggaatgctattttgaatgcttagttt 638

                                                        
Query: 651 tatcacctttctctccagttgtttgtctgcagaaagccatgcctt 695
            | |||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 637 caccacctttctctccagttgcttgtcagaagaaagccatgcctt 593



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 543 ttgtgtcctttcggtttctgcttgactttttgtgctgc 580
           ||||| |||||| ||||||||||||| |||||||||||
Sbjct: 750 ttgtgacctttcagtttctgcttgaccttttgtgctgc 713
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>gb|AY104391.1| Zea mays PCO073745 mRNA sequence
          Length = 1301

 Score =  139 bits (70), Expect = 1e-29
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                        
Query: 264  cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323
            ||||||||| |||| || ||||||| ||  ||||||||| |||||||||| | |||||||
Sbjct: 1075 cagcactcgaagcatcccaggcacgcgatggcggcgcaggcctgcgccatgacgatggcg 1016

                                                                        
Query: 324  cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383
            ||||||||||||||| || |||||||||||||| ||||||||||||||  ||||||||| 
Sbjct: 1015 cactggtcgttcatcttgctgcacgccttgatgaagcacatgcagcagcagcagtccgcc 956

                          
Query: 384  acgcggctgcagca 397
            | ||||||||||||
Sbjct: 955  atgcggctgcagca 942
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>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete
             sequence
          Length = 145714

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                         
Query: 264   cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323
             ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 73616 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 73557

                                                                         
Query: 324   cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383
             ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 73556 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 73497

                           
Query: 384   acgcggctgcagca 397
             | ||||||||||||
Sbjct: 73496 aggcggctgcagca 73483
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                            
Query: 264      cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323
                ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 16510717 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16510776

                                                                            
Query: 324      cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383
                ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 16510777 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16510836

                              
Query: 384      acgcggctgcagca 397
                | ||||||||||||
Sbjct: 16510837 aggcggctgcagca 16510850
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Plus

                                                                            
Query: 264      cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323
                ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 16504350 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16504409

                                                                            
Query: 324      cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383
                ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 16504410 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16504469

                              
Query: 384      acgcggctgcagca 397
                | ||||||||||||
Sbjct: 16504470 aggcggctgcagca 16504483
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>dbj|AK062571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C06, full
            insert sequence
          Length = 1289

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 112/134 (83%)
 Strand = Plus / Minus

                                                                        
Query: 264  cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323
            ||||||||| ||||  | ||||||||||||||| |||| | |||| |||| | |||||||
Sbjct: 1057 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 998

                                                                        
Query: 324  cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383
            ||| ||||||||||| || |||| |  |||||| ||||||||||||||  ||||||||  
Sbjct: 997  caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 938

                          
Query: 384  acgcggctgcagca 397
            | ||||||||||||
Sbjct: 937  aggcggctgcagca 924
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>emb|AL117329.8|HSBA191L9 Human DNA sequence from clone RP11-191L9 on chromosome 22, complete
             sequence
          Length = 146438

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 569   tttttgtgctgcgtccaaattgg 591
             |||||||||||||||||||||||
Sbjct: 44078 tttttgtgctgcgtccaaattgg 44100
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>gb|AF419981.1|AF419981 Drosophila yakuba defective chorion-1 fc125 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 3898

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 353  gatgcagcacatgcagcagaggcagt 378
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>gb|AF419980.1|AF419980 Drosophila yakuba defective chorion-1 fc106 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 3911

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 353  gatgcagcacatgcagcagaggcagt 378
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>gb|AF419979.1|AF419979 Drosophila yakuba defective chorion-1 fc177 protein precursor (dec-1)
            mRNA, complete cds, alternatively spliced
          Length = 5926

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 353  gatgcagcacatgcagcagaggcagt 378
            ||||||||| ||||||||||||||||
Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
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>emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 in linkage group 1,
             complete sequence
          Length = 153682

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 589   tggtttgaagtacaaccatgct 610
             ||||||||||||||||||||||
Sbjct: 30588 tggtttgaagtacaaccatgct 30567
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>emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 in linkage group 7,
             complete sequence
          Length = 50326

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 353   gatgcagcacatgcagcagaggcag 377
             |||||||||||||||||||| ||||
Sbjct: 14896 gatgcagcacatgcagcagatgcag 14920
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>ref|XM_677758.1| PREDICTED: Danio rerio similar to trinucleotide repeat containing 9
            (LOC555286), partial mRNA
          Length = 2115

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 353  gatgcagcacatgcagcagaggcag 377
            |||||||||||||||||||| ||||
Sbjct: 1254 gatgcagcacatgcagcagatgcag 1278
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>gb|AY702083.1| Oikopleura dioica homeodomain protein NK2a (NK2a) gene, partial cds
          Length = 2380

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 558  ttctgcttgactttttgtgct 578
            |||||||||||||||||||||
Sbjct: 1545 ttctgcttgactttttgtgct 1565
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 660    tctctccagttgtttgtctgcaga 683
              ||||||||||||| ||||||||||
Sbjct: 119195 tctctccagttgtgtgtctgcaga 119172
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>gb|AE006423.1| Lactococcus lactis subsp. lactis IL1403 section 185 of 218 of the
            complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 637  tctatgcttaattttatcac 656
            ||||||||||||||||||||
Sbjct: 7326 tctatgcttaattttatcac 7345
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>gb|AF154094.1| Uncultured hydrocarbon seep bacterium BPC065 16S ribosomal RNA gene,
            partial sequence
          Length = 1521

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  agaccatgaagctggaatcg 523
            ||||||||||||||||||||
Sbjct: 1334 agaccatgaagctggaatcg 1353
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>gb|AY484743.1| Uncultured bacterium clone 99917 16S ribosomal RNA gene, partial
           sequence
          Length = 365

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 agaccatgaagctggaatcg 523
           ||||||||||||||||||||
Sbjct: 206 agaccatgaagctggaatcg 225
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>gb|AC122332.4| Mus musculus BAC clone RP23-346G14 from chromosome 10, complete
             sequence
          Length = 214728

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   ttgtgtcctttcggtttctg 562
             ||||||||||||||||||||
Sbjct: 44452 ttgtgtcctttcggtttctg 44433
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>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence
          Length = 141868

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 168 cacagtatgacacccacaggcttc 191
           |||||||||||| |||||||||||
Sbjct: 730 cacagtatgacatccacaggcttc 707
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     cggctgcagcaccctccagc 406
               ||||||||||||||||||||
Sbjct: 2687473 cggctgcagcaccctccagc 2687492
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>emb|AL589744.18| Mouse DNA sequence from clone RP23-80C18 on chromosome 13 Contains a
             nove gene, a ribosomal protein large p1 (Rplp1) pseudogene
             and the Cmah gene for CMP-N-Acetylneuraminic acid
             hydroxylase, complete sequence
          Length = 216800

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   aacctgtgaggaggttttcc 470
             ||||||||||||||||||||
Sbjct: 44844 aacctgtgaggaggttttcc 44863
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>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence
          Length = 173836

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 441    tcctcgccaaaacctgtgaggagg 464
              ||||| ||||||||||||||||||
Sbjct: 128772 tcctccccaaaacctgtgaggagg 128795
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>gb|DQ394922.1| Uncultured bacterium clone VHS-B1-47 16S ribosomal RNA gene, partial
            sequence
          Length = 1532

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  agaccatgaagctggaatcg 523
            ||||||||||||||||||||
Sbjct: 1346 agaccatgaagctggaatcg 1365
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>gb|DQ394901.1| Uncultured delta proteobacterium clone VHS-B1-26 16S ribosomal RNA
            gene, partial sequence
          Length = 1513

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  agaccatgaagctggaatcg 523
            ||||||||||||||||||||
Sbjct: 1328 agaccatgaagctggaatcg 1347
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>gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, complete sequence
          Length = 149304

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    cacagtatgacacccacaggcttc 191
              |||||||||||| |||||||||||
Sbjct: 114055 cacagtatgacatccacaggcttc 114032
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>gb|AC083814.17|AC083814 Mus musculus 7 BAC RP23-129J16 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 191410

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    gatcattctttgatcaagca 158
              ||||||||||||||||||||
Sbjct: 114051 gatcattctttgatcaagca 114070
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>gb|AC080015.15|AC080015 Mus musculus 7 BAC RP23-163B17 (RPCI Mouse BAC) complete sequence
          Length = 202086

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    gatcattctttgatcaagca 158
              ||||||||||||||||||||
Sbjct: 177122 gatcattctttgatcaagca 177103
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>emb|AJ582703.1|UDE582703 Uncultured Desulfobacteraceae bacterium 16S rRNA gene, clone
           cLaKi-StA81
          Length = 1119

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 agaccatgaagctggaatcg 523
           ||||||||||||||||||||
Sbjct: 952 agaccatgaagctggaatcg 971
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 458     gaggaggttttccttggtgg 477
               ||||||||||||||||||||
Sbjct: 1533189 gaggaggttttccttggtgg 1533208
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>gb|AC005242.1|AC005242 Homo sapiens chromosome 17, clone hRPK.118_F_13, complete sequence
          Length = 160262

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 634   ttctctatgcttaattttatcacctttc 661
             |||||||||||||||||| |||| ||||
Sbjct: 38355 ttctctatgcttaattttctcacatttc 38328
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>gb|AC135469.4| Mus musculus BAC clone RP24-406G8 from 13, complete sequence
          Length = 165641

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 607   tgctttgtgtactctgaaag 626
             ||||||||||||||||||||
Sbjct: 85534 tgctttgtgtactctgaaag 85515
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>gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome 14, complete sequence
          Length = 195329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 466    tttccttggtggctgctttgtcac 489
              ||||||| ||||||||||||||||
Sbjct: 104867 tttcctttgtggctgctttgtcac 104890


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,833,040
Number of Sequences: 3902068
Number of extensions: 5833040
Number of successful extensions: 128301
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128144
Number of HSP's gapped (non-prelim): 157
length of query: 696
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 673
effective length of database: 17,143,297,704
effective search space: 11537439354792
effective search space used: 11537439354792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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