ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RG84C_DROME (P40809) GTPase-activating protein RacGAP84C (Protei... 28 4.2
2MAGB1_HUMAN (P43366) Melanoma-associated antigen B1 (MAGE-B1 ant... 28 5.5

>RG84C_DROME (P40809) GTPase-activating protein RacGAP84C (Protein rotund|
           RacGAP)
          Length = 384

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 277 AMRCRCSPLRTAARCCRERXLPC 345
           ++RCR  PLR    CCR+  + C
Sbjct: 114 SLRCRACPLRCHIGCCRQLTVNC 136



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>MAGB1_HUMAN (P43366) Melanoma-associated antigen B1 (MAGE-B1 antigen) (MAGE-XP|
           antigen) (DSS-AHC critical interval MAGE superfamily 10)
           (DAM10)
          Length = 347

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 353 RVXQGXLRSRQQRAAVRKGEQRHRIANQTAAAKEE 249
           R  +  LR+R++R   R+  Q  ++A+ TAA KEE
Sbjct: 3   RGQKSKLRAREKRRKAREETQGLKVAHATAAEKEE 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,499,122
Number of Sequences: 219361
Number of extensions: 529448
Number of successful extensions: 1061
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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