ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15j15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475381.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1377 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Minus Query: 479 agctcgaattcctcttcccggagcaccatctccgcggcctcttcctcgttgtcgtcgaga 538 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||| Sbjct: 1373 agctcgaattcctcttcccggagcaccatctcagcagcctcctcctcatcttcgtcgaac 1314 Query: 539 gagaagtacttgctcctctcggccggcctgaatgtgtagaacatgaa 585 || ||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 1313 gaaaagtatctgctcctctcggccggtctgaatgtgtagaacatgaa 1267
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Minus Query: 479 agctcgaattcctcttcccggagcaccatctccgcggcctcttcctcgttgtcgtcgaga 538 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||| Sbjct: 70613 agctcgaattcctcttcccggagcaccatctcagcagcctcctcctcatcttcgtcgaac 70554 Query: 539 gagaagtacttgctcctctcggccggcctgaatgtgtagaacatgaa 585 || ||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 70553 gaaaagtatctgctcctctcggccggtctgaatgtgtagaacatgaa 70507
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Minus Query: 479 agctcgaattcctcttcccggagcaccatctccgcggcctcttcctcgttgtcgtcgaga 538 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||| Sbjct: 22575563 agctcgaattcctcttcccggagcaccatctcagcagcctcctcctcatcttcgtcgaac 22575504 Query: 539 gagaagtacttgctcctctcggccggcctgaatgtgtagaacatgaa 585 || ||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 22575503 gaaaagtatctgctcctctcggccggtctgaatgtgtagaacatgaa 22575457
>dbj|AK064348.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A01, full insert sequence Length = 1746 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Minus Query: 479 agctcgaattcctcttcccggagcaccatctccgcggcctcttcctcgttgtcgtcgaga 538 |||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||| Sbjct: 1447 agctcgaattcctcttcccggagcaccatctcagcagcctcctcctcatcttcgtcgaac 1388 Query: 539 gagaagtacttgctcctctcggccggcctgaatgtgtagaacatgaa 585 || ||||| |||||||||||||||| |||||||||||||||||||| Sbjct: 1387 gaaaagtatctgctcctctcggccggtctgaatgtgtagaacatgaa 1341
>gb|AY110073.1| Zea mays CL26733_1 mRNA sequence Length = 731 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 497 cggagcaccatctccgcggcctcttcctcgttgtcgtcgagagagaagtacttgctcctc 556 |||||||||||||| ||||| || || || | ||||| || | ||||||| | ||||| Sbjct: 240 cggagcaccatctctgcggcttcctcatcatcctcgtcaagtgcaaagtactggttcctc 299 Query: 557 tcggccggcctgaatgtgtagaacatgaacatgtaga 593 || || |||||||| ||||||||||||||||||||| Sbjct: 300 tcagctggcctgaacatgtagaacatgaacatgtaga 336
>ref|NM_190492.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1273 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1232
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 35865123 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 35865164
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 129581 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 129622
>dbj|AK119783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F04, full insert sequence Length = 1678 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1334 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1293
>dbj|AK106145.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H02, full insert sequence Length = 1599 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1295 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1254
>dbj|AK098958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063N02, full insert sequence Length = 1656 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1335 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1294
>dbj|AK066629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A10, full insert sequence Length = 1745 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1336 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1295
>dbj|AK061720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A01, full insert sequence Length = 1599 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Minus Query: 552 tcctctcggccggcctgaatgtgtagaacatgaacatgtaga 593 ||||||| || |||||||| ||||||||||||||| ||||| Sbjct: 1295 tcctctctgctggcctgaacatgtagaacatgaacaggtaga 1254
>ref|XM_569195.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB03620) partial mRNA Length = 2337 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 tgaagctactgtgaaagagga 289 ||||||||||||||||||||| Sbjct: 1629 tgaagctactgtgaaagagga 1649
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 tgaagctactgtgaaagagga 289 ||||||||||||||||||||| Sbjct: 1071216 tgaagctactgtgaaagagga 1071196
>gb|AC010711.5| Drosophila melanogaster 3L BAC RP98-22D12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187438 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 aattcctcttcccggagcacc 505 ||||||||||||||||||||| Sbjct: 89388 aattcctcttcccggagcacc 89368
>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170465 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 aattcctcttcccggagcacc 505 ||||||||||||||||||||| Sbjct: 9057 aattcctcttcccggagcacc 9037
>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete sequence Length = 318699 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 aattcctcttcccggagcacc 505 ||||||||||||||||||||| Sbjct: 213936 aattcctcttcccggagcacc 213916
>ref|XM_450781.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 489 cctcttcccggagcaccatctccgcggc 516 |||||||||||| |||||||||| |||| Sbjct: 113 cctcttcccggaccaccatctccccggc 140
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 acttacggcaacttccaatg 23 |||||||||||||||||||| Sbjct: 448476 acttacggcaacttccaatg 448457
>gb|AC161808.8| Mus musculus chromosome 5, clone RP24-386J15, complete sequence Length = 184815 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 atttgaagctactgtgaaag 285 |||||||||||||||||||| Sbjct: 176304 atttgaagctactgtgaaag 176323
>gb|AC166995.2| Mus musculus BAC clone RP23-255N15 from chromosome 16, complete sequence Length = 170106 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 atttgaagctactgtgaaag 285 |||||||||||||||||||| Sbjct: 145616 atttgaagctactgtgaaag 145597
>gb|AC127027.13| Mus musculus chromosome 5, clone RP23-236G19, complete sequence Length = 195654 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 atttgaagctactgtgaaag 285 |||||||||||||||||||| Sbjct: 72468 atttgaagctactgtgaaag 72487
>gb|AC140240.2| Mus musculus BAC clone RP24-281M12 from chromosome 18, complete sequence Length = 166476 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ccaagagagcaatctcagag 431 |||||||||||||||||||| Sbjct: 120174 ccaagagagcaatctcagag 120193
>gb|AE004313.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 221 of 251 of the complete chromosome Length = 10373 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gcgggtaattacagatgttc 476 |||||||||||||||||||| Sbjct: 10050 gcgggtaattacagatgttc 10031
>gb|AC095021.2| Sus scrofa clone RP44-290D23, complete sequence Length = 165901 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gaaatgcagcgaacttcaaa 157 |||||||||||||||||||| Sbjct: 6011 gaaatgcagcgaacttcaaa 6030
>emb|Z83841.1|HS323B6 Human DNA sequence from clone RP3-323B6 on chromosome Xq11-12 Contains a adaptor-related protein complex 1 (AP1M2) pseudogene, a pseudogene similar to part of TLE family (transducin-like enhancer of split (E(sp1) homolog, Drosophila)) and two CpG islands, complete sequence Length = 112762 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cagtgtgctaaaatctcaga 388 |||||||||||||||||||| Sbjct: 40344 cagtgtgctaaaatctcaga 40325
>gb|AC025265.21| Homo sapiens 12 BAC RP11-341G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180064 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tgagtggcatatcatattag 46 |||||||||||||||||||| Sbjct: 35495 tgagtggcatatcatattag 35514
>gb|AF391292.1| Branchiostoma floridae cosmid MPMGc117N2261, partial sequence Length = 45750 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 agttgtgttaacagacaaacaaaa 88 |||||| ||||||||||||||||| Sbjct: 20193 agttgtattaacagacaaacaaaa 20170
>gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosome 16, complete sequence Length = 219345 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 atttgaagctactgtgaaag 285 |||||||||||||||||||| Sbjct: 202624 atttgaagctactgtgaaag 202643
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 accatctccgcggcctcttc 522 |||||||||||||||||||| Sbjct: 27200457 accatctccgcggcctcttc 27200476
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 489 cctcttcccggagcaccatctccgcggc 516 |||||||||||| |||||||||| |||| Sbjct: 12724351 cctcttcccggaccaccatctccccggc 12724324
>gb|AC006512.13| Homo sapiens 12 PAC RP3-461F17 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 155975 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 atgatgagctatacctgata 356 |||||||||||||||||||| Sbjct: 100037 atgatgagctatacctgata 100056
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR07I18, complete sequence Length = 159413 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aatactacagtacaatctta 312 |||||||||||||||||||| Sbjct: 142458 aatactacagtacaatctta 142439
>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR48D03, complete sequence Length = 175917 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aatactacagtacaatctta 312 |||||||||||||||||||| Sbjct: 28182 aatactacagtacaatctta 28163
>gb|AC008033.9| Homo sapiens 12 BAC RP11-81H14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149136 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 564 gcctgaatgtgtagaacatgaaca 587 |||||||||||||||||| ||||| Sbjct: 77459 gcctgaatgtgtagaacaagaaca 77482
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 489 cctcttcccggagcaccatctccgcggc 516 |||||||||||| |||||||||| |||| Sbjct: 32128 cctcttcccggaccaccatctccccggc 32101
>ref|XM_318695.1| Anopheles gambiae str. PEST ENSANGP00000022666 (ENSANGG00000020547), partial mRNA Length = 444 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 tcttcctcgttgtcgtcgag 537 |||||||||||||||||||| Sbjct: 392 tcttcctcgttgtcgtcgag 373
>emb|BX465199.9| Zebrafish DNA sequence from clone DKEY-84I7 in linkage group 5, complete sequence Length = 218103 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 atgcacttatcaagtaatga 215 |||||||||||||||||||| Sbjct: 65437 atgcacttatcaagtaatga 65456
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aatactacagtacaatctta 312 |||||||||||||||||||| Sbjct: 123796 aatactacagtacaatctta 123777
>emb|AL844533.11| Mouse DNA sequence from clone RP23-299K8 on chromosome 2, complete sequence Length = 183820 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 tttgaagctactgtgaaaga 286 |||||||||||||||||||| Sbjct: 106957 tttgaagctactgtgaaaga 106976
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 accatctccgcggcctcttc 522 |||||||||||||||||||| Sbjct: 27126057 accatctccgcggcctcttc 27126076
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 accatctccgcggcctcttc 522 |||||||||||||||||||| Sbjct: 139356 accatctccgcggcctcttc 139375
>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146585 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 accatctccgcggcctcttc 522 |||||||||||||||||||| Sbjct: 13489 accatctccgcggcctcttc 13508
>emb|AL844180.6| Mouse DNA sequence from clone RP23-403A4 on chromosome 4, complete sequence Length = 213870 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 atttgaagctactgtgaaag 285 |||||||||||||||||||| Sbjct: 61514 atttgaagctactgtgaaag 61533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,745,413 Number of Sequences: 3902068 Number of extensions: 4745413 Number of successful extensions: 93731 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93487 Number of HSP's gapped (non-prelim): 243 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
