ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase i... 41 6e-04
2PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS) 32 0.48
3LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late en... 30 1.8
4ZPBP1_HUMAN (Q9BS86) Zona pellucida-binding protein 1 precursor ... 30 1.8
5TNR16_HUMAN (P08138) Tumor necrosis factor receptor superfamily ... 28 4.0
6RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) ... 28 4.0
7POMT1_DROME (Q9VTK2) Protein O-mannosyltransferase 1 (EC 2.4.1.1... 28 4.0
8KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-as... 28 5.3
9YL_DROME (P98163) Putative vitellogenin receptor precursor (Prot... 28 6.9
10PNS1_KLULA (Q6CY85) Protein PNS1 28 6.9
11FER8_METJA (Q57619) Putative ferredoxin MJ0155 27 9.0
12FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 ac... 27 9.0
13FBX38_HUMAN (Q6PIJ6) F-box only protein 38 (Modulator of KLF7 ac... 27 9.0

>IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1|
           precursor
          Length = 102

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = -1

Query: 394 KCCNXCR-SFSGVDVCDDAHPKCPKGCSACRV---VTPSPHKTFXCADMKSTVDGTCGGP 227
           KCC  C  SFSG+  CDD    C   C  C V    + S +  F C D   T  G CG  
Sbjct: 45  KCCTNCNFSFSGLYTCDDVKKDCDPVCKKCVVAVHASYSGNNKFRCTD---TFLGMCGPK 101

Query: 226 C 224
           C
Sbjct: 102 C 102



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>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)|
          Length = 5045

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 237  QVPSTVLFMSAQXNVL*GL--GVTTRXAEQPLGHLGWASSQTST 362
            Q+P T +FMSA  N    L    TT   E P G++ W  +Q+ T
Sbjct: 1869 QIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGT 1912



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>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein|
           18) (Small proline-rich-like epidermal differentiation
           complex protein 5A)
          Length = 118

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 29/92 (31%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
 Frame = -1

Query: 397 PKCCNXCRSFSGVDVCDDAHPKCPKGCSACRVVTPSPHKTFXCADMKSTVDGTC----GG 230
           PKC   C             PKCP  CSA     P P     C    S+  G C    GG
Sbjct: 14  PKCTPKCPPKCTPKCPPKCPPKCPPQCSA-----PCPPPVSSCCG--SSSGGCCSSEGGG 66

Query: 229 PCKKH*SLQGFRLXXGVPPRIKLR*DEQSSCC 134
            C  H             PR  LR   QSS C
Sbjct: 67  CCLSH-----------HRPRQSLRRRPQSSSC 87



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>ZPBP1_HUMAN (Q9BS86) Zona pellucida-binding protein 1 precursor (Sp38)|
          Length = 351

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 376 RSFSGVDVCDDAHPKCPKGCSACRVVTPSPHKTFXCADMKSTV 248
           R F G  +    HPKCP+ C  C   + +P     C    S++
Sbjct: 301 RCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSL 343



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>TNR16_HUMAN (P08138) Tumor necrosis factor receptor superfamily member 16|
           precursor (Low-affinity nerve growth factor receptor)
           (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity
           neurotrophin receptor p75NTR) (CD271 antigen)
          Length = 427

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
 Frame = -1

Query: 394 KCCNXCRSFSGVDV----CDDAHPKCPKG---------CSACRVVTPSPHKTFXCADMKS 254
           K C  C     +       DDA  +C  G         C ACRV        F C D ++
Sbjct: 84  KPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCEAGSGLVFSCQDKQN 143

Query: 253 TVDGTC 236
           TV   C
Sbjct: 144 TVCEEC 149



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>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ|
           protein-like 5) (RecQ5)
          Length = 991

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 379 CRSFSGVDVCDDAHPKCPKGCSACRVVTPSPHKTFXCADMKSTVDGTCGGP 227
           CR  +      DA P C KGC  C+  T +  +     +  S+   TC GP
Sbjct: 411 CRHAAIAKYFGDALPACAKGCDHCQNPT-AVRRRLEALERSSSWSKTCIGP 460



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>POMT1_DROME (Q9VTK2) Protein O-mannosyltransferase 1 (EC 2.4.1.109)|
           (Dolichyl-phosphate-mannose--protein mannosyltransferase
           1) (dPOMT1) (Protein rotated abdomen)
          Length = 886

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 397 PKCCNXCRSFSGVDVCDD--AHPKCPKGCSACRVVTPSPHKT 278
           P CCN  R+ + ++ C D   H   P   S  R  TP+P  T
Sbjct: 61  PLCCNGARALTMLNCCVDVNCHLNAPLRGSVNRHTTPTPTPT 102



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>KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-associated|
           protein 10.1) (High sulfur keratin-associated protein
           10.1) (Keratin-associated protein 18-1)
           (Keratin-associated protein 18.1)
          Length = 282

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/57 (24%), Positives = 20/57 (35%)
 Frame = -1

Query: 391 CCNXCRSFSGVDVCDDAHPKCPKGCSACRVVTPSPHKTFXCADMKSTVDGTCGGPCK 221
           C + C     VD C ++   C   C A     P+P  T  C  +       C   C+
Sbjct: 9   CSSACSDSWQVDACPESC--CEPHCCALSCCAPAPCLTLVCTPVSRVSSPCCQAACE 63



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>YL_DROME (P98163) Putative vitellogenin receptor precursor (Protein yolkless)|
            (YL)
          Length = 1984

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 397  PKCCNXCRSFSGVDVCDDAHPKCPKG 320
            PKC   CRS SG  VC       P G
Sbjct: 1373 PKCATACRSASGRQVCQHKCRATPAG 1398



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>PNS1_KLULA (Q6CY85) Protein PNS1|
          Length = 553

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 133 YACVWAALYGQQYVRCXSSLCFLSRQKAGVAC*IN 29
           YA V+ ALYG+ Y+R      ++ R+K G+   IN
Sbjct: 412 YAYVFIALYGKPYLRAAKETWYMLREK-GIDALIN 445



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>FER8_METJA (Q57619) Putative ferredoxin MJ0155|
          Length = 151

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 26/109 (23%), Positives = 40/109 (36%)
 Frame = -1

Query: 397 PKCCNXCRSFSGVDVCDDAHPKCPKGCSACRVVTPSPHKTFXCADMKSTVDGTCGGPCKK 218
           P+ C  C  +  +++C + H     G S  R V   P     C +           PCK+
Sbjct: 10  PEKCTKC--YDCINICKEIH-----GESRVRKVDGIPIFCMQCEN----------APCKE 52

Query: 217 H*SLQGFRLXXGVPPRIKLR*DEQSSCCYACVWAALYGQQYVRCXSSLC 71
              +    L  G+P   K R      C  AC   A++ +  V    +LC
Sbjct: 53  ICPVDAIYLKDGIPIVDKERCIACGMCAIACPIGAIFIKNRVAHKCTLC 101



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>FBX38_MOUSE (Q8BMI0) F-box only protein 38 (Modulator of KLF7 activity) (MoKA)|
          Length = 1194

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 307 RVVTPSPHKTFXCADMKSTVDGTCGGP 227
           R+  P P K F C  +++ V   C GP
Sbjct: 219 RLTKPQPFKDFLCISLRTFVMRNCAGP 245



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>FBX38_HUMAN (Q6PIJ6) F-box only protein 38 (Modulator of KLF7 activity homolog)|
           (MoKA)
          Length = 1188

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 307 RVVTPSPHKTFXCADMKSTVDGTCGGP 227
           R+  P P K F C  +++ V   C GP
Sbjct: 219 RLTKPQPFKDFLCISLRTFVMRNCAGP 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,093,073
Number of Sequences: 219361
Number of extensions: 783586
Number of successful extensions: 1838
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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