ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
2gb|AY110754.1| Zea mays CL19491_1 mRNA sequence 178 1e-41
3emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 163 9e-37
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
5gb|AY510454.1| Aspergillus nomius isolate AN13137 aflatoxin bios... 44 0.55
6gb|AY389454.1| Danio rerio toll-like receptor 9 (tlr9) mRNA, par... 42 2.2
7gb|AE004301.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 2.2
8ref|XM_685911.1| PREDICTED: Danio rerio toll-like receptor 9 (tl... 42 2.2
9gb|AC161148.7| Mus musculus BAC clone RP23-358L5 from chromosome... 42 2.2
10gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, com... 40 8.6
11gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, c... 40 8.6
12emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chrom... 40 8.6
13emb|AL137841.9| Human DNA sequence from clone RP11-42J13 on chro... 40 8.6
14emb|AL022344.3|HSY214H10 Human DNA sequence from clone XX-Y214H1... 40 8.6
15gb|AC125391.10| Pan troglodytes clone rp43-115b1, complete sequence 40 8.6
16gb|AC104664.2| Homo sapiens BAC clone RP11-724H6 from 4, complet... 40 8.6
17gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Canc... 40 8.6
18emb|CT574567.3| Pan troglodytes chromosome X clone PTB-059K09 ma... 40 8.6
19emb|CR855314.5| Zebrafish DNA sequence from clone CH211-262O5 in... 40 8.6 
>dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D05, full
            insert sequence
          Length = 3158

 Score =  281 bits (142), Expect = 1e-72
 Identities = 251/286 (87%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 346  catctttggttatgcccacgtctacgtctgggtctacgacagacatccgtgtcaacgtgt 405
            ||||| ||||| ||||| | |||| ||| || ||||| ||||||||||| ||||| ||||
Sbjct: 2568 catctctggttgtgccctcatctatgtccggatctacaacagacatccgggtcaaggtgt 2509

                                                                        
Query: 406  agtccagcaaaaatgtgctgcgtacaagtctgtcgactctgctgaagtgcctttgcgaat 465
            | ||||  ||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||
Sbjct: 2508 aatccaataaaaatgtgcttcgtactagtctatcaactctgctgaaatgcctctgtgaat 2449

                                                                        
Query: 466  atgggatgaggccctcgaggagctcactgatgccttttatctccaggatatcagtgggag 525
            |||| || || ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2448 atggaataagtccctcaaggagctcactgatgccctttatctccaggatatcagtgggag 2389

                                                                        
Query: 526  gcaagctccgcaacacccgaaaaagcacaaactgtgcaacatgacaaaacttgggctttg 585
            ||||||||| ||| |||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct: 2388 gcaagctcctcaatacccgaaaaagcacaaactgtgcaacatgacaaagcttaggttttg 2329

                                                          
Query: 586  tattccatttcacgtatatactcaagaagcacgcgaagcccttcct 631
            | ||||| ||| || |||||||||||||| ||||||||||||||||
Sbjct: 2328 tgttcca-ttcccggatatactcaagaagtacgcgaagcccttcct 2284



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 55   gcaaagaatacattctgtacagtg 78
            ||||||||| ||||||||||||||
Sbjct: 2880 gcaaagaatgcattctgtacagtg 2857
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>gb|AY110754.1| Zea mays CL19491_1 mRNA sequence
          Length = 1005

 Score =  178 bits (90), Expect = 1e-41
 Identities = 193/229 (84%)
 Strand = Plus / Plus

                                                                       
Query: 366 tctacgtctgggtctacgacagacatccgtgtcaacgtgtagtccagcaaaaatgtgctg 425
           ||||| ||||| ||||| || ||||| ||  ||| ||| ||||||| || ||| ||||| 
Sbjct: 480 tctacatctggatctaccacggacattcgcatcagcgtatagtccaacagaaacgtgctt 539

                                                                       
Query: 426 cgtacaagtctgtcgactctgctgaagtgcctttgcgaatatgggatgaggccctcgagg 485
           || || ||||| || ||||||||||| ||||| |||||||| || || ||||||||||||
Sbjct: 540 cggactagtctatccactctgctgaaatgcctctgcgaatacggaataaggccctcgagg 599

                                                                       
Query: 486 agctcactgatgccttttatctccaggatatcagtgggaggcaagctccgcaacacccga 545
           |||||||||||||| |||||||||||||||||||||||||  || |||| ||| ||||| 
Sbjct: 600 agctcactgatgccctttatctccaggatatcagtgggagagaaactcctcaatacccgn 659

                                                            
Query: 546 aaaagcacaaactgtgcaacatgacaaaacttgggctttgtattccatt 594
               |||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 660 nnnngcacaaactgcgcaacatgacagaacttgggcttcgtattccatt 708
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score =  163 bits (82), Expect = 9e-37
 Identities = 116/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                         
Query: 506   ctccaggatatcagtgggaggcaagctccgcaacacccgaaaaagcacaaactgtgcaac 565
             ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 92391 ctccaggatatcagtgggaggcaagctcctcaatacccgaaaaagcacaaactgtgcaac 92450

                                                                         
Query: 566   atgacaaaacttgggctttgtattccatttcacgtatatactcaagaagcacgcgaagcc 625
             |||||||| ||| || ||||| ||||| ||| || |||||||||||||| ||||||||||
Sbjct: 92451 atgacaaagcttaggttttgtgttcca-ttcccggatatactcaagaagtacgcgaagcc 92509

                   
Query: 626   cttcct 631
             ||||||
Sbjct: 92510 cttcct 92515



 Score =  123 bits (62), Expect = 7e-25
 Identities = 137/162 (84%)
 Strand = Plus / Plus

                                                                         
Query: 346   catctttggttatgcccacgtctacgtctgggtctacgacagacatccgtgtcaacgtgt 405
             ||||| ||||| ||||| | |||| ||| || ||||| ||||||||||| ||||| ||||
Sbjct: 92144 catctctggttgtgccctcatctatgtccggatctacaacagacatccgggtcaaggtgt 92203

                                                                         
Query: 406   agtccagcaaaaatgtgctgcgtacaagtctgtcgactctgctgaagtgcctttgcgaat 465
             | ||||  ||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||
Sbjct: 92204 aatccaataaaaatgtgcttcgtactagtctatcaactctgctgaaatgcctctgtgaat 92263

                                                       
Query: 466   atgggatgaggccctcgaggagctcactgatgccttttatct 507
             |||| || || ||||| ||||||||||||||||| |||||||
Sbjct: 92264 atggaataagtccctcaaggagctcactgatgccctttatct 92305



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    gcaaagaatacattctgtacagtg 78
             ||||||||| ||||||||||||||
Sbjct: 91832 gcaaagaatgcattctgtacagtg 91855
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  163 bits (82), Expect = 9e-37
 Identities = 116/126 (92%), Gaps = 1/126 (0%)
 Strand = Plus / Plus

                                                                            
Query: 506      ctccaggatatcagtgggaggcaagctccgcaacacccgaaaaagcacaaactgtgcaac 565
                ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 29955639 ctccaggatatcagtgggaggcaagctcctcaatacccgaaaaagcacaaactgtgcaac 29955698

                                                                            
Query: 566      atgacaaaacttgggctttgtattccatttcacgtatatactcaagaagcacgcgaagcc 625
                |||||||| ||| || ||||| ||||| ||| || |||||||||||||| ||||||||||
Sbjct: 29955699 atgacaaagcttaggttttgtgttcca-ttcccggatatactcaagaagtacgcgaagcc 29955757

                      
Query: 626      cttcct 631
                ||||||
Sbjct: 29955758 cttcct 29955763



 Score =  123 bits (62), Expect = 7e-25
 Identities = 137/162 (84%)
 Strand = Plus / Plus

                                                                            
Query: 346      catctttggttatgcccacgtctacgtctgggtctacgacagacatccgtgtcaacgtgt 405
                ||||| ||||| ||||| | |||| ||| || ||||| ||||||||||| ||||| ||||
Sbjct: 29955392 catctctggttgtgccctcatctatgtccggatctacaacagacatccgggtcaaggtgt 29955451

                                                                            
Query: 406      agtccagcaaaaatgtgctgcgtacaagtctgtcgactctgctgaagtgcctttgcgaat 465
                | ||||  ||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||
Sbjct: 29955452 aatccaataaaaatgtgcttcgtactagtctatcaactctgctgaaatgcctctgtgaat 29955511

                                                          
Query: 466      atgggatgaggccctcgaggagctcactgatgccttttatct 507
                |||| || || ||||| ||||||||||||||||| |||||||
Sbjct: 29955512 atggaataagtccctcaaggagctcactgatgccctttatct 29955553



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 55       gcaaagaatacattctgtacagtg 78
                ||||||||| ||||||||||||||
Sbjct: 29955080 gcaaagaatgcattctgtacagtg 29955103
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>gb|AY510454.1| Aspergillus nomius isolate AN13137 aflatoxin biosynthesis gene cluster,
             complete sequence
          Length = 75352

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 476   gccctcgaggagctcactgatg 497
             ||||||||||||||||||||||
Sbjct: 15659 gccctcgaggagctcactgatg 15638
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>gb|AY389454.1| Danio rerio toll-like receptor 9 (tlr9) mRNA, partial cds
          Length = 332

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 246 gttttgctggattttctcttc 266
           |||||||||||||||||||||
Sbjct: 219 gttttgctggattttctcttc 239
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>gb|AE004301.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 209
            of 251 of the complete chromosome
          Length = 10786

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 545  aaaaagcacaaactgtgcaac 565
            |||||||||||||||||||||
Sbjct: 1572 aaaaagcacaaactgtgcaac 1592
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>ref|XM_685911.1| PREDICTED: Danio rerio toll-like receptor 9 (tlr9), mRNA
          Length = 3198

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 246  gttttgctggattttctcttc 266
            |||||||||||||||||||||
Sbjct: 3010 gttttgctggattttctcttc 3030
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>gb|AC161148.7| Mus musculus BAC clone RP23-358L5 from chromosome 1, complete sequence
          Length = 181120

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 250   tgctggattttctcttcttgc 270
             |||||||||||||||||||||
Sbjct: 89075 tgctggattttctcttcttgc 89055
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>gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, complete sequence
          Length = 190857

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   gggctttgtattccatttca 597
             ||||||||||||||||||||
Sbjct: 92516 gggctttgtattccatttca 92497
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>gb|AC101709.11| Mus musculus chromosome 10, clone RP23-271A21, complete sequence
          Length = 143875

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    aaaaagcacaaactgtgcaa 564
              ||||||||||||||||||||
Sbjct: 143707 aaaaagcacaaactgtgcaa 143726
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>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete
             sequence
          Length = 173310

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 482   gaggagctcactgatgcctt 501
             ||||||||||||||||||||
Sbjct: 45078 gaggagctcactgatgcctt 45059
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>emb|AL137841.9| Human DNA sequence from clone RP11-42J13 on chromosome Xq27.3-28,
            complete sequence
          Length = 64079

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   aagcaagataaatatggttc 107
            ||||||||||||||||||||
Sbjct: 4765 aagcaagataaatatggttc 4784
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>emb|AL022344.3|HSY214H10 Human DNA sequence from clone XX-Y214H10 on chromosome 10 Contains a
             vomeronasal receptor (V1R) pseudogene, a cubilin
             (intrinsic factor-cobalamin receptor) (CUBN) pseudogene,
             gene KIAA0187, two novel genes, the gene for a novel
             protein similar to Ras suppressor protein 1 (RSU1) and
             four CpG islands, complete sequence
          Length = 197864

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   tcaccttcttactacttttcttgc 234
             |||| |||||||||||||||||||
Sbjct: 33945 tcactttcttactacttttcttgc 33922
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>gb|AC125391.10| Pan troglodytes clone rp43-115b1, complete sequence
          Length = 155629

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    tcaccttcttactacttttcttgc 234
              |||| |||||||||||||||||||
Sbjct: 130847 tcactttcttactacttttcttgc 130870
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>gb|AC104664.2| Homo sapiens BAC clone RP11-724H6 from 4, complete sequence
          Length = 158145

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     gcaagataaatatggttcag 109
              ||||||||||||||||||||
Sbjct: 104503 gcaagataaatatggttcag 104484
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>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206425

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 545    aaaaagcacaaactgtgcaa 564
              ||||||||||||||||||||
Sbjct: 204230 aaaaagcacaaactgtgcaa 204211
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>emb|CT574567.3| Pan troglodytes chromosome X clone PTB-059K09 map Xq28, complete sequence
          Length = 163464

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aagcaagataaatatggttc 107
              ||||||||||||||||||||
Sbjct: 106797 aagcaagataaatatggttc 106816
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>emb|CR855314.5| Zebrafish DNA sequence from clone CH211-262O5 in linkage group 15,
             complete sequence
          Length = 124067

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 247   ttttgctggattttctcttcttgc 270
             |||||||||||||| |||||||||
Sbjct: 29997 ttttgctggattttttcttcttgc 30020


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,922,013
Number of Sequences: 3902068
Number of extensions: 4922013
Number of successful extensions: 115950
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115876
Number of HSP's gapped (non-prelim): 71
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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