ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags15i20 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_ORYSA (P49661) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 518 Score = 273 bits (698), Expect = 3e-73 Identities = 130/153 (84%), Positives = 143/153 (93%) Frame = -3 Query: 660 TPLVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREA 481 TPLVKWRIQ +NES+LPL+VNCWPSVSGNETYVNIEYEASEMFDL+NVVISIPLPALREA Sbjct: 366 TPLVKWRIQELNESSLPLAVNCWPSVSGNETYVNIEYEASEMFDLHNVVISIPLPALREA 425 Query: 480 PTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTF 301 P V+QIDGEW+YDSRNSVLEWSIIL+DQSNRSGS+EF VP ADPSTFFPIS+GF ASNTF Sbjct: 426 PGVRQIDGEWRYDSRNSVLEWSIILVDQSNRSGSLEFTVPAADPSTFFPISVGFSASNTF 485 Query: 300 SDLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 SDLKVT I PL+EG+PPK+SQR RLV NYQ+V Sbjct: 486 SDLKVTAIRPLREGSPPKFSQRNRLVTYNYQVV 518
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 137 bits (344), Expect = 4e-32 Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR + LEW + +ID N+SGS+EF + P P+ FFP+ + F + + Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYC 479 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 480 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 137 bits (344), Expect = 4e-32 Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR + LEW + +ID N+SGS+EF + P P+ FFP+ + F + + Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYC 479 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 480 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 134 bits (338), Expect = 2e-31 Identities = 63/152 (41%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI IPLP+ AP Sbjct: 360 VLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESLELNDVVIMIPLPSGVGAP 419 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR ++LEW + +ID N+SGS+EF + P+ FFP+ + F + + Sbjct: 420 VIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYC 478 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 479 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 510
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 134 bits (337), Expect = 2e-31 Identities = 63/152 (41%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYC 479 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 480 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 134 bits (337), Expect = 2e-31 Identities = 63/152 (41%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYC 479 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 480 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 134 bits (336), Expect = 3e-31 Identities = 63/152 (41%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEASE-MFDLNNVVISIPLPALREAP 478 ++KWR+Q ES +PL++NCWPS SGN VNIEYE E +LN+VVI+IPLP+ AP Sbjct: 361 VLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP 420 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 + +IDGE+++DSR + LEW + +ID N+SGS+EF + P+ FFP+ + F + + Sbjct: 421 VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYC 479 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 +++VT + + +P ++S + Y+I+ Sbjct: 480 NIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL 511
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 115 bits (289), Expect = 9e-26 Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 1/152 (0%) Frame = -3 Query: 654 LVKWRIQGMNESNLPLSVNCWPSVSGNETYVNIEYEAS-EMFDLNNVVISIPLPALREAP 478 ++KW++ E LP+S NCWP S + VNIEY E LNNV I +PLP AP Sbjct: 366 ILKWKMALSEEEQLPISFNCWPQESSDGVQVNIEYTLQREDITLNNVRIIVPLPTAT-AP 424 Query: 477 TVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIVPPADPSTFFPISIGFGASNTFS 298 +V + DGE++Y +V+ WS+ +ID SN SG++EF VP FFP+S+GF + N F Sbjct: 425 SVGECDGEYEYHKTKNVIVWSLAVIDSSNSSGTLEFSVPNGHCDHFFPVSVGFTSENLFV 484 Query: 297 DLKVTGIHPLKEGNPPKYSQRVRLVAANYQIV 202 + V + +G+P YS + N++IV Sbjct: 485 PITVQKV-VKNDGSPVTYSVETTFNSENFEIV 515
>BCSA2_ACEXY (O82859) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 756 Score = 32.7 bits (73), Expect = 1.00 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -3 Query: 624 ESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQI----DG 457 E+++P++V P+ TY N + ++ + V + IPLP + P K+I DG Sbjct: 584 EAHIPVTVYDAPAEGQPHTYYNATHGMTQDVSMGGVAVHIPLPDVTTGPVKKRIHAVLDG 643 Query: 456 E 454 E Sbjct: 644 E 644
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 513 ISIPLPALREAPTVKQIDGEWKYDSRNSV 427 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -3 Query: 513 ISIPLPALREAPTVKQIDGEWKYDSRNSV 427 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 588 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 427 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 426 LEWSI 412 + WSI Sbjct: 340 IVWSI 344
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -3 Query: 525 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 364 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -3 Query: 588 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 427 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 426 LEWSI 412 + WS+ Sbjct: 340 IVWSV 344
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 525 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 412 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSI 345
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -3 Query: 525 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 412 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSI 345
>MFD_ECOLI (P30958) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1148 Score = 30.0 bits (66), Expect = 6.5 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 61 IHAFICQWCDTLHMEQDKSHIFKQVS 138 I F QW DT +++D HI++QVS Sbjct: 224 IELFRSQWRDTFEVKRDPEHIYQQVS 249
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 522 NVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 412 NV I IP+P + PT K G KY S + W I Sbjct: 348 NVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKI 384
>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 561 Score = 29.6 bits (65), Expect = 8.4 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 548 RPQRCLT*TMLSYQFLCLHFGRLQPLNRLMESGSMTLETLYWNGPLSLLIS 396 + Q C +L + L H P++ + + S+ + L W GP+S L+S Sbjct: 401 KQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVS 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,579,412 Number of Sequences: 219361 Number of extensions: 2163716 Number of successful extensions: 4820 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4812 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
