Clone Information

BLAST Search Result

Clone Name	rbags15i15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK070571.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	222	1e-54
2	gb\|AC099404.2\| Oryza sativa (japonica cultivar-group) chromosome...	135	2e-28
3	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	135	2e-28
4	gb\|AY109025.1\| Zea mays PCO084350 mRNA sequence	115	2e-22
5	gb\|AY107701.1\| Zea mays PCO084347 mRNA sequence	52	0.002
6	gb\|AY596297.1\| Haloarcula marismortui ATCC 43049 chromosome I, c...	48	0.038
7	gb\|AC163667.3\| Mus musculus BAC clone RP23-53N20 from chromosome...	42	2.3
8	gb\|BC028265.1\| Mus musculus cDNA sequence BC028265, mRNA (cDNA c...	42	2.3
9	gb\|AC159820.2\| Mus musculus BAC clone RP23-158K20 from chromosom...	42	2.3
10	ref\|NM_172392.2\| Mus musculus cDNA sequence BC028265 (BC028265),...	42	2.3
11	tpg\|BK001631.1\| TPA: TPA_exp: Mus musculus regulator of sex-limi...	42	2.3
12	gb\|AC159264.3\| Mus musculus BAC clone RP24-67G10 from chromosome...	42	2.3
13	gb\|AC149366.2\| Phakopsora pachyrhizi clone JGIAFNA-53G14, comple...	40	9.3
14	gb\|AY835586.1\| Homo sapiens calpain 2, (m/II) large subunit (CAP...	40	9.3
15	ref\|XM_629611.1\| Dictyostelium discoideum hypothetical protein (...	40	9.3
16	ref\|XM_514224.1\| PREDICTED: Pan troglodytes similar to Calpain 2...	40	9.3
17	gb\|AC091246.8\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.3
18	gb\|AC154760.2\| Mus musculus BAC clone RP24-414E6 from chromosome...	40	9.3
19	gb\|CP000003.1\| Streptococcus pyogenes MGAS10394, complete genome	40	9.3
20	ref\|XM_459390.1\| Debaryomyces hansenii CBS767 hypothetical prote...	40	9.3
21	gb\|AC183544.3\| Pan troglodytes BAC clone CH251-284N17 from chrom...	40	9.3
22	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	9.3
23	emb\|Z71183.2\|HSN28H9 Human DNA sequence from clone LL22NC03-28H9...	40	9.3
24	emb\|AL360233.21\| Human DNA sequence from clone RP11-198D23 on ch...	40	9.3
25	gb\|AC067746.7\| Homo sapiens chromosome 10 clone RP11-408L20, com...	40	9.3
26	emb\|AL121755.23\|HSDJ680N4 Human DNA sequence from clone RP4-680N...	40	9.3
27	emb\|AL109753.9\|HSJ875J14 Human DNA sequence from clone RP5-875J1...	40	9.3
28	emb\|CR382137.1\| Debaryomyces hansenii chromosome E of strain CBS...	40	9.3
29	emb\|CR391928.7\| Zebrafish DNA sequence from clone DKEYP-21F4 in ...	40	9.3
30	gb\|AC099065.2\| Homo sapiens chromosome 1 clone RP11-105I12, comp...	40	9.3
31	gb\|AC145335.15\| Pan troglodytes clone rp43-26k12, complete sequence	40	9.3
32	ref\|XM_931032.1\| PREDICTED: Homo sapiens similar to transcriptio...	40	9.3
33	gb\|AC091165.15\| Homo sapiens chromosome 8, clone RP11-366G13, co...	40	9.3
34	emb\|AL773587.11\| Mouse DNA sequence from clone RP23-38J2 on chro...	40	9.3
35	gb\|AC159214.2\| Pan troglodytes BAC clone CH251-522M3 from chromo...	40	9.3
36	emb\|CR376864.1\| Pan troglodytes chromosome X BAC PTB-045G22, com...	40	9.3
37	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
38	gb\|AC131254.5\| Homo sapiens chromosome 8, clone RP11-94H18, comp...	40	9.3
39	gb\|AC005883.14\|AC005883 Homo sapiens chromosome 17, clone RP11-9...	40	9.3
40	dbj\|AP001894.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	9.3
41	emb\|CR847844.6\| Zebrafish DNA sequence from clone DKEY-181C13 in...	40	9.3
42	emb\|AL365333.13\| Mouse DNA sequence from clone RP21-490L20 on ch...	40	9.3

>dbj|AK070571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058K10, full
            insert sequence
          Length = 1719

 Score =  222 bits (112), Expect = 1e-54
 Identities = 215/248 (86%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                        
Query: 421  gtcaggcctgacgcgatcctcctaccggccacatttccatagaacatgccggggatggca 480
            ||||||||||  ||||||||| ||||||| |||| ||| ||||||| |||||||||||||
Sbjct: 1283 gtcaggcctgcagcgatcctcttaccggcgacatgtccgtagaacaggccggggatggca 1224

                                                                        
Query: 481  gggacgaaaacgtcgctctgcgagcagacctcaaggtccagggcccttgctaggtctgaa 540
            |||||||| |||||||||| ||||||||  |  |||||||| || ||||| |||| ||||
Sbjct: 1223 gggacgaacacgtcgctctccgagcagattttgaggtccagtgctcttgcaaggtatgaa 1164

                                                                        
Query: 541  tcgccagagttcaggaactctcctttcttctcagccggcattatgtcatccttggtataa 600
            || || || ||||||||||| ||||| ||  | ||||||||||| |||||||||||||||
Sbjct: 1163 tccccggatttcaggaactcgcctttgttagcggccggcattatatcatccttggtataa 1104

                                                                        
Query: 601  gtgtgtggaaatgccttcttcagattattcaggccctttgtgccaccatgtctctgtcaa 660
            |||| ||||||||||| ||||||| ||| |||| | |||||||||||||||||| |||||
Sbjct: 1103 gtgtttggaaatgcctccttcagagtatccagg-cttttgtgccaccatgtctccgtcaa 1045

                    
Query: 661  gtagatgg 668
            ||||||||
Sbjct: 1044 gtagatgg 1037



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 311  actagcagtagcacgagtaggcgaagtggctcttcttggtgatgtatgtggagacgaagt 370
            |||||||||| || |||||||| |  |||||||||||||  | ||||||||||||||| |
Sbjct: 1393 actagcagtaacatgagtaggcaagatggctcttcttggacacgtatgtggagacgaact 1334

                             
Query: 371  ctgaggcctgcgctgaa 387
            |||| ||| | ||||||
Sbjct: 1333 ctgaagccagagctgaa 1317

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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0019D02, complete sequence
          Length = 154692

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                         
Query: 421   gtcaggcctgacgcgatcctcctaccggccacatttccatagaacatgccggggatggca 480
             ||||||||||  ||||||||| ||||||| |||| ||| ||||||| |||||||||||||
Sbjct: 47195 gtcaggcctgcagcgatcctcttaccggcgacatgtccgtagaacaggccggggatggca 47254

                                                                         
Query: 481   gggacgaaaacgtcgctctgcgagcagacctcaaggtccagggcccttgctaggtctgaa 540
             |||||||| |||||||||| ||||||||  |  |||||||| || ||||| |||| ||||
Sbjct: 47255 gggacgaacacgtcgctctccgagcagattttgaggtccagtgctcttgcaaggtatgaa 47314

                                                                 
Query: 541   tcgccagagttcaggaactctcctttcttctcagccggcattatgtcatcct 592
             || || || ||||||||||| ||||| ||  | ||||||||||| |||||||
Sbjct: 47315 tccccggatttcaggaactcgcctttgttagcggccggcattatatcatcct 47366



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 72/79 (91%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                         
Query: 590   ccttggtataagtgtgtggaaatgccttcttcagattattcaggccctttgtgccaccat 649
             ||||||||||||||| ||||||||||| ||||||| ||| |||| | |||||||||||||
Sbjct: 47599 ccttggtataagtgtttggaaatgcctccttcagagtatccagg-cttttgtgccaccat 47657

                                
Query: 650   gtctctgtcaagtagatgg 668
             ||||| |||||||||||||
Sbjct: 47658 gtctccgtcaagtagatgg 47676



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 311   actagcagtagcacgagtaggcgaagtggctcttcttggtgatgtatgtggagacgaagt 370
             |||||||||| || |||||||| |  |||||||||||||  | ||||||||||||||| |
Sbjct: 47085 actagcagtaacatgagtaggcaagatggctcttcttggacacgtatgtggagacgaact 47144

                              
Query: 371   ctgaggcctgcgctgaa 387
             |||| ||| | ||||||
Sbjct: 47145 ctgaagccagagctgaa 47161

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  135 bits (68), Expect = 2e-28
 Identities = 146/172 (84%)
 Strand = Plus / Plus

                                                                            
Query: 421      gtcaggcctgacgcgatcctcctaccggccacatttccatagaacatgccggggatggca 480
                ||||||||||  ||||||||| ||||||| |||| ||| ||||||| |||||||||||||
Sbjct: 19001930 gtcaggcctgcagcgatcctcttaccggcgacatgtccgtagaacaggccggggatggca 19001989

                                                                            
Query: 481      gggacgaaaacgtcgctctgcgagcagacctcaaggtccagggcccttgctaggtctgaa 540
                |||||||| |||||||||| ||||||||  |  |||||||| || ||||| |||| ||||
Sbjct: 19001990 gggacgaacacgtcgctctccgagcagattttgaggtccagtgctcttgcaaggtatgaa 19002049

                                                                    
Query: 541      tcgccagagttcaggaactctcctttcttctcagccggcattatgtcatcct 592
                || || || ||||||||||| ||||| ||  | ||||||||||| |||||||
Sbjct: 19002050 tccccggatttcaggaactcgcctttgttagcggccggcattatatcatcct 19002101



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 72/79 (91%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                            
Query: 590      ccttggtataagtgtgtggaaatgccttcttcagattattcaggccctttgtgccaccat 649
                ||||||||||||||| ||||||||||| ||||||| ||| |||| | |||||||||||||
Sbjct: 19002334 ccttggtataagtgtttggaaatgcctccttcagagtatccagg-cttttgtgccaccat 19002392

                                   
Query: 650      gtctctgtcaagtagatgg 668
                ||||| |||||||||||||
Sbjct: 19002393 gtctccgtcaagtagatgg 19002411



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                            
Query: 311      actagcagtagcacgagtaggcgaagtggctcttcttggtgatgtatgtggagacgaagt 370
                |||||||||| || |||||||| |  |||||||||||||  | ||||||||||||||| |
Sbjct: 19001820 actagcagtaacatgagtaggcaagatggctcttcttggacacgtatgtggagacgaact 19001879

                                 
Query: 371      ctgaggcctgcgctgaa 387
                |||| ||| | ||||||
Sbjct: 19001880 ctgaagccagagctgaa 19001896

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>gb|AY109025.1| Zea mays PCO084350 mRNA sequence
          Length = 1113

 Score =  115 bits (58), Expect = 2e-22
 Identities = 219/270 (81%), Gaps = 2/270 (0%)
 Strand = Plus / Minus

                                                                       
Query: 409 acaaggatctgggtcaggcctgacgcgatcctcctaccggccacatttccatagaacatg 468
           |||| |||||||||  | || |||||||||||| |||| |  ||||  || ||||||| |
Sbjct: 780 acaacgatctgggtgcgtccggacgcgatcctcttacccgtgacatgcccgtagaacagg 721

                                                                       
Query: 469 ccggggatggcagggacgaaaacgtcgctctgcgagcagacctcaaggtccagggccctt 528
           || | || |||||||||||| |||||||||||||| |||| |||||||||||| ||||||
Sbjct: 720 ccagcgacggcagggacgaacacgtcgctctgcgaacagatctcaaggtccagagccctt 661

                                                                       
Query: 529 gctaggtctgaatcgccagagttcaggaactctcctttcttctcagccggcattatgtca 588
           |||||||||| || ||  || |||||||| ||  |||| ||||| || ||||| ||||||
Sbjct: 660 gctaggtctgcattgctggatttcaggaattcagctttgttctcggctggcataatgtca 601

                                                                       
Query: 589 tccttggtataagtgtgtggaaatgccttcttcagattattcaggccctttgtgccacca 648
            ||||     |||||| ||| ||| | | |||||||  || |||| ||||||| |||| |
Sbjct: 600 cccttataccaagtgtttgggaattcttccttcagaacatccagg-cctttgtaccacga 542

                                         
Query: 649 tgtctctgtcaagtagatgggttgtgttag 678
            ||||||||||||||||| |||||||||||
Sbjct: 541 cgtctctgtcaagtagat-ggttgtgttag 513



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 313 tagcagtagcacgagtaggcgaagtggctcttcttggtgatgtatgtggagacgaagtct 372
           ||||||||||||| |||||| | |||| |||| |||| |||||| ||||||| |||||||
Sbjct: 873 tagcagtagcacgcgtaggcaaggtggttcttgttggagatgtaggtggagatgaagtct 814

             
Query: 373 ga 374
           ||
Sbjct: 813 ga 812

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>gb|AY107701.1| Zea mays PCO084347 mRNA sequence
          Length = 530

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 72/86 (83%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 497 tctgcgagcagacctcaaggtcc-agggcccttgctaggtctgaatcgccagagttcagg 555
           |||||||||||| |||||||||| | | | ||||||||||||| || ||  || ||||||
Sbjct: 90  tctgcgagcagatctcaaggtccaaagtcgcttgctaggtctgcattgctggatttcagg 31

                                     
Query: 556 aactctcctttcttctcagccggcat 581
           || || ||||| |||||||| |||||
Sbjct: 30  aattcacctttgttctcagctggcat 5

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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 303     gcggcagaactagcagtagcacgagtag 330
               ||||||||||||||||||||| ||||||
Sbjct: 2072599 gcggcagaactagcagtagcaagagtag 2072626

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>gb|AC163667.3| Mus musculus BAC clone RP23-53N20 from chromosome 13, complete sequence
          Length = 220804

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 599   aagtgtgtggaaatgccttct 619
             |||||||||||||||||||||
Sbjct: 98536 aagtgtgtggaaatgccttct 98556

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>gb|BC028265.1| Mus musculus cDNA sequence BC028265, mRNA (cDNA clone MGC:40747
            IMAGE:5365910), complete cds
          Length = 3480

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 599  aagtgtgtggaaatgccttct 619
            |||||||||||||||||||||
Sbjct: 1651 aagtgtgtggaaatgccttct 1671

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>gb|AC159820.2| Mus musculus BAC clone RP23-158K20 from chromosome 9, complete sequence
          Length = 215017

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   aaacctaaatcagtaataata 217
             |||||||||||||||||||||
Sbjct: 72355 aaacctaaatcagtaataata 72335

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>ref|NM_172392.2| Mus musculus cDNA sequence BC028265 (BC028265), mRNA
          Length = 3480

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 599  aagtgtgtggaaatgccttct 619
            |||||||||||||||||||||
Sbjct: 1651 aagtgtgtggaaatgccttct 1671

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>tpg|BK001631.1| TPA: TPA_exp: Mus musculus regulator of sex-limitation candidate 8
            (Rslcan8) mRNA, complete cds
          Length = 3482

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 599  aagtgtgtggaaatgccttct 619
            |||||||||||||||||||||
Sbjct: 1667 aagtgtgtggaaatgccttct 1687

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>gb|AC159264.3| Mus musculus BAC clone RP24-67G10 from chromosome 13, complete
            sequence
          Length = 164748

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 599  aagtgtgtggaaatgccttct 619
            |||||||||||||||||||||
Sbjct: 4412 aagtgtgtggaaatgccttct 4432

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>gb|AC149366.2| Phakopsora pachyrhizi clone JGIAFNA-53G14, complete sequence
          Length = 30830

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 597  ataagtgtgtggaaatgcct 616
            ||||||||||||||||||||
Sbjct: 8679 ataagtgtgtggaaatgcct 8660

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>gb|AY835586.1| Homo sapiens calpain 2, (m/II) large subunit (CAPN2) gene, complete cds
          Length = 66744

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttcaggaactctcctttctt 569
             ||||||||||||||||||||
Sbjct: 15636 ttcaggaactctcctttctt 15617

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>ref|XM_629611.1| Dictyostelium discoideum hypothetical protein (DDB0219750), partial
            mRNA
          Length = 2967

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 208  agtaataatacaacaacagc 227
            ||||||||||||||||||||
Sbjct: 2038 agtaataatacaacaacagc 2057

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>ref|XM_514224.1| PREDICTED: Pan troglodytes similar to Calpain 2, large subunit
           (LOC457765), mRNA
          Length = 3093

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 550 ttcaggaactctcctttctt 569
           ||||||||||||||||||||
Sbjct: 332 ttcaggaactctcctttctt 313

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>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03
             map E1419S, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   cctaaatcagtaataataca 219
             ||||||||||||||||||||
Sbjct: 51505 cctaaatcagtaataataca 51486

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>gb|AC154760.2| Mus musculus BAC clone RP24-414E6 from chromosome 14, complete sequence
          Length = 163089

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tcacacaacaaaacctaaat 206
              ||||||||||||||||||||
Sbjct: 117712 tcacacaacaaaacctaaat 117731

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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     aacagcgcttgcatatctac 241
               ||||||||||||||||||||
Sbjct: 1562160 aacagcgcttgcatatctac 1562179

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>ref|XM_459390.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E02002g)
           partial mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 277 cttattactgacaataaacg 296
           ||||||||||||||||||||
Sbjct: 270 cttattactgacaataaacg 251

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>gb|AC183544.3| Pan troglodytes BAC clone CH251-284N17 from chromosome x, complete
             sequence
          Length = 161059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 557   actctcctttcttctcagcc 576
             ||||||||||||||||||||
Sbjct: 90049 actctcctttcttctcagcc 90068

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      cctaaatcagtaataataca 219
                ||||||||||||||||||||
Sbjct: 23603422 cctaaatcagtaataataca 23603403

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>emb|Z71183.2|HSN28H9 Human DNA sequence from clone LL22NC03-28H9 on chromosome 22 Contains
             the 3' end of the FBXO7 gene for F-box protein 7 and the
             3' end of the SYN3 gene for Synapsin III, complete
             sequence
          Length = 28900

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   actgtgcttcacacaacaaa 198
             ||||||||||||||||||||
Sbjct: 14453 actgtgcttcacacaacaaa 14434

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>emb|AL360233.21| Human DNA sequence from clone RP11-198D23 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans) and a transcription elongation factor
             B(SIII) (TCEB2) pseudogene, complete sequence
          Length = 109816

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 557   actctcctttcttctcagcc 576
             ||||||||||||||||||||
Sbjct: 80143 actctcctttcttctcagcc 80124

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>gb|AC067746.7| Homo sapiens chromosome 10 clone RP11-408L20, complete sequence
          Length = 189545

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   caaggtccagggcccttgct 531
             ||||||||||||||||||||
Sbjct: 92870 caaggtccagggcccttgct 92889

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>emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N4 on chromosome 20 Contains the 3'
              end of the CDS2 gene for CDP-diacylglycerol synthase
              (phosphatidate cytidylyltransferase) 2, the gene for a
              novel protein similar to ubiquitin-conjugating enzyme E2D 3
              (UBC4/5 homolog, yeast) (UBE2D3), the GPR73L1 gene for G
              protein-coupled receptor 73-like 1 (prokineticin receptor
              2, PKR2, GPR73b) and a CpG island, complete sequence
          Length = 143892

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 558    ctctcctttcttctcagccggcat 581
              ||||||||||||||||||| ||||
Sbjct: 139271 ctctcctttcttctcagcctgcat 139294

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>emb|AL109753.9|HSJ875J14 Human DNA sequence from clone RP5-875J14 on chromosome Xq13.1-21.1
              Contains the 3' end of the ATRX gene for alpha
              thalassemia/mental retardation syndrome X-linked (RAD54
              homolog, S. cerevisiae), complete sequence
          Length = 148423

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    cttcacacaacaaaacctaa 204
              ||||||||||||||||||||
Sbjct: 117547 cttcacacaacaaaacctaa 117528

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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    cttattactgacaataaacg 296
              ||||||||||||||||||||
Sbjct: 131243 cttattactgacaataaacg 131262

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>emb|CR391928.7| Zebrafish DNA sequence from clone DKEYP-21F4 in linkage group 5,
             complete sequence
          Length = 72746

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cacaacaaaacctaaatcag 209
             ||||||||||||||||||||
Sbjct: 39047 cacaacaaaacctaaatcag 39066

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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttcaggaactctcctttctt 569
             ||||||||||||||||||||
Sbjct: 90099 ttcaggaactctcctttctt 90080

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>gb|AC145335.15| Pan troglodytes clone rp43-26k12, complete sequence
          Length = 208895

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   actgtgcttcacacaacaaa 198
             ||||||||||||||||||||
Sbjct: 99031 actgtgcttcacacaacaaa 99050

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>ref|XM_931032.1| PREDICTED: Homo sapiens similar to transcriptional regulator ATRX
            isoform 1, transcript variant 5 (LOC642995), mRNA
          Length = 5669

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  cttcacacaacaaaacctaa 204
            ||||||||||||||||||||
Sbjct: 5646 cttcacacaacaaaacctaa 5665

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>gb|AC091165.15| Homo sapiens chromosome 8, clone RP11-366G13, complete sequence
          Length = 188456

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 548    agttcaggaactctcctttcttct 571
              ||||||| ||||||||||||||||
Sbjct: 140327 agttcagaaactctcctttcttct 140304

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>emb|AL773587.11| Mouse DNA sequence from clone RP23-38J2 on chromosome X, complete
            sequence
          Length = 175713

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 603  gtgtggaaatgccttcttcagatt 626
            ||||| ||||||||||||||||||
Sbjct: 8753 gtgtgcaaatgccttcttcagatt 8730

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>gb|AC159214.2| Pan troglodytes BAC clone CH251-522M3 from chromosome unknown, complete
              sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    actgtgcttcacacaacaaa 198
              ||||||||||||||||||||
Sbjct: 134923 actgtgcttcacacaacaaa 134942

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>emb|CR376864.1| Pan troglodytes chromosome X BAC PTB-045G22, complete sequence
          Length = 151492

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   cttcacacaacaaaacctaa 204
             ||||||||||||||||||||
Sbjct: 29364 cttcacacaacaaaacctaa 29383

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      cctaaatcagtaataataca 219
                ||||||||||||||||||||
Sbjct: 23596450 cctaaatcagtaataataca 23596431

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>gb|AC131254.5| Homo sapiens chromosome 8, clone RP11-94H18, complete sequence
          Length = 153000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 548   agttcaggaactctcctttcttct 571
             ||||||| ||||||||||||||||
Sbjct: 67863 agttcagaaactctcctttcttct 67886

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>gb|AC005883.14|AC005883 Homo sapiens chromosome 17, clone RP11-958E11, complete sequence
          Length = 146224

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    tgtgtctggtgtttgttccc 160
              ||||||||||||||||||||
Sbjct: 108688 tgtgtctggtgtttgttccc 108669

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>dbj|AP001894.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-606E8, complete
             sequence
          Length = 151452

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 557   actctcctttcttctcagccggca 580
             ||||||||| ||||||||||||||
Sbjct: 20790 actctccttgcttctcagccggca 20767

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>emb|CR847844.6| Zebrafish DNA sequence from clone DKEY-181C13 in linkage group 10,
             complete sequence
          Length = 121598

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   acaacaaaacctaaatcagt 210
             ||||||||||||||||||||
Sbjct: 95044 acaacaaaacctaaatcagt 95025

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>emb|AL365333.13| Mouse DNA sequence from clone RP21-490L20 on chromosome X, complete
             sequence
          Length = 151792

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 603   gtgtggaaatgccttcttcagatt 626
             ||||| ||||||||||||||||||
Sbjct: 92878 gtgtgcaaatgccttcttcagatt 92855


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,274,036
Number of Sequences: 3902068
Number of extensions: 5274036
Number of successful extensions: 103085
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102898
Number of HSP's gapped (non-prelim): 183
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result