| Clone Name | rbags15i07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 gggcaagaacacatcaatcaaaata 181 ||||||||||||||||||| ||||| Sbjct: 67495 gggcaagaacacatcaatctaaata 67471
>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence Length = 212061 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 193 aacccagccagccaaccaaca 213 ||||||||||||||||||||| Sbjct: 80204 aacccagccagccaaccaaca 80224
>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence Length = 204108 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 caacccagccagccaaccaac 212 ||||||||||||||||||||| Sbjct: 128872 caacccagccagccaaccaac 128852
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 gggcaagaacacatcaatcaaaata 181 ||||||||||||||||||| ||||| Sbjct: 6396101 gggcaagaacacatcaatctaaata 6396077
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 157 gggcaagaacacatcaatcaaaata 181 ||||||||||||||||||| ||||| Sbjct: 6462568 gggcaagaacacatcaatctaaata 6462544
>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence Length = 165774 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 aacccagccagccaaccaac 212 |||||||||||||||||||| Sbjct: 119896 aacccagccagccaaccaac 119915
>emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12 on chromosome 1q24-25 Contains a glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)(GOT2) pseudogene, a novel gene and the TNFSF4 gene for tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa), complete sequence Length = 147724 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tcccttccctcaggctcagg 84 |||||||||||||||||||| Sbjct: 53007 tcccttccctcaggctcagg 53026
>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence Length = 228458 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 aacccagccagccaaccaac 212 |||||||||||||||||||| Sbjct: 219039 aacccagccagccaaccaac 219058
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 caagaacacatcaatcaaaa 179 |||||||||||||||||||| Sbjct: 38831836 caagaacacatcaatcaaaa 38831855
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 caagaacacatcaatcaaaa 179 |||||||||||||||||||| Sbjct: 104718 caagaacacatcaatcaaaa 104737
>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence Length = 195204 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ccagcgtaactgatagtctc 153 |||||||||||||||||||| Sbjct: 159773 ccagcgtaactgatagtctc 159792
>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence Length = 176340 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 acatagataatagataggta 123 |||||||||||||||||||| Sbjct: 35152 acatagataatagataggta 35133
>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence Length = 217265 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ccagcgtaactgatagtctc 153 |||||||||||||||||||| Sbjct: 89435 ccagcgtaactgatagtctc 89454
>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10, complete sequence Length = 148044 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tcaacccagccagccaacca 210 |||||||||||||||||||| Sbjct: 140787 tcaacccagccagccaacca 140768
>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ccagcgtaactgatagtctc 153 |||||||||||||||||||| Sbjct: 130306 ccagcgtaactgatagtctc 130287 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,012,836 Number of Sequences: 3902068 Number of extensions: 2012836 Number of successful extensions: 63091 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63006 Number of HSP's gapped (non-prelim): 85 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)