ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
2gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, comple... 168 2e-38
3gb|AY104704.1| Zea mays PCO133361 mRNA sequence 141 4e-30
4gb|BT017489.1| Zea mays clone EL01N0413B02.c mRNA sequence 139 1e-29
5gb|AY105502.1| Zea mays PCO135520 mRNA sequence 129 1e-26
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
7dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
8gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete se... 44 0.63
9emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 o... 44 0.63
10ref|XM_481520.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
11gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.5
12ref|XM_359981.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 2.5
13gb|BT014353.1| Lycopersicon esculentum clone 133630F, mRNA sequence 42 2.5
14emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chro... 42 2.5
15emb|BX248391.22| Zebrafish DNA sequence from clone CH211-212M14 ... 42 2.5
16emb|BX539349.17| Zebrafish DNA sequence from clone DKEY-74L17 in... 42 2.5
17emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 ... 42 2.5
18gb|AC132949.4| Mus musculus BAC clone RP24-547H18 from chromosom... 42 2.5
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
20dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
21dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
22ref|NM_174370.2| Bos taurus inositol 1,4,5-triphosphate receptor... 40 9.8
23ref|XM_391186.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 9.8
24ref|XM_858469.1| PREDICTED: Canis familiaris similar to Inositol... 40 9.8
25ref|XM_538867.2| PREDICTED: Canis familiaris similar to Inositol... 40 9.8
26emb|CR705766.2|CNS0G7IQ Tetraodon nigroviridis full-length cDNA 40 9.8
27gb|AY358456.1| Homo sapiens clone DNA40571 EDTP308 (UNQ308) mRNA... 40 9.8
28emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on ch... 40 9.8
29ref|NM_002224.1| Homo sapiens inositol 1,4,5-triphosphate recept... 40 9.8
30dbj|AK093524.1| Homo sapiens cDNA FLJ36205 fis, clone TESTI20286... 40 9.8
31gb|AF402601.1| Bos taurus inositol 1,4,5-trisphosphate receptor ... 40 9.8
32ref|XM_686252.1| PREDICTED: Danio rerio similar to solute carrie... 40 9.8
33ref|NM_001039503.1| Homo sapiens polyserase 3 (LOC339105), mRNA 40 9.8
34gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 9.8
35gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 9.8
36gb|AC108028.4| Homo sapiens BAC clone RP11-72E18 from 4, complet... 40 9.8
37gb|AC135050.3| Homo sapiens chromosome 16 clone RP11-196G11, com... 40 9.8
38gb|AC079395.6| Homo sapiens BAC clone RP11-219H23 from 2, comple... 40 9.8
39gb|AC087591.2| Homo sapiens chromosome 3 clone RP11-95M5 map 3p,... 40 9.8
40gb|AC090957.1| Homo sapiens chromosome 3 clone RP11-708D1 map 3p... 40 9.8
41dbj|AK131087.1| Homo sapiens mRNA for FLJ00289 protein 40 9.8
42ref|XM_311006.2| Anopheles gambiae str. PEST ENSANGP00000008130 ... 40 9.8
43emb|CR318601.8| Zebrafish DNA sequence from clone CH211-274E20 i... 40 9.8
44dbj|D26351.1|HUMHT3I Homo sapiens mRNA for type 3 inositol 1,4,5... 40 9.8
45emb|AJ627035.1| Homo sapiens mRNA for polyserase-3 40 9.8
46gb|U01062.1|HUMIP3R3 Human type 3 inositol 1,4,5-trisphosphate r... 40 9.8
47dbj|AB209739.1| Homo sapiens mRNA for Inositol 1,4,5-trisphospha... 40 9.8
48emb|AL832807.1|HSM804118 Homo sapiens mRNA; cDNA DKFZp667O0323 (... 40 9.8

>dbj|AK073896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G12, full
            insert sequence
          Length = 1456

 Score =  202 bits (102), Expect = 1e-48
 Identities = 330/406 (81%)
 Strand = Plus / Minus

                                                                        
Query: 267  tagaagacgtccgggttgtagcgcccgggcatggagctgctctgctgggcctgcttcaga 326
            ||||||||||| || ||| || ||||||| |||||| || ||||||| ||||||||||||
Sbjct: 1028 tagaagacgtcaggattgaagtgcccggggatggagttgttctgctgagcctgcttcaga 969

                                                                        
Query: 327  tgcatctgcagcgcgtagttgttgatctcaagagtcctcagctgctcctggtactgcagg 386
            ||||||  |||||| |||||||| ||||| || |||||||| ||||||||||||||||  
Sbjct: 968  tgcatcgtcagcgcatagttgtttatctctagggtcctcagttgctcctggtactgcaca 909

                                                                        
Query: 387  acgagctgcttcaggccctgcacctcgtggctgcgctcgtcgaactccttctgtcgctca 446
            || || |||||||  | ||| ||||| ||||| | ||||||||||||||| || ||||||
Sbjct: 908  acaagttgcttcaaactctgaacctcctggctcctctcgtcgaactccttttggcgctca 849

                                                                        
Query: 447  tgctggattgccaccgcgcgcttcaggaccgcgttctgcgacaggacggccgtcatctgc 506
            || || || || ||||| ||||| ||||| |||||||    ||| ||| | ||||  |||
Sbjct: 848  tgttgaatggcgaccgctcgcttgaggacagcgttctctcgcagcacgacggtcaattgc 789

                                                                        
Query: 507  tccttgagcatcatgttctcctgatgcaagctctgcgctgcttcagctcctgcaccctcc 566
            ||||| |||||||| || ||||  |||||| | || ||||| |||||||||| || ||||
Sbjct: 788  tccttaagcatcatattttccttttgcaagttttgtgctgcatcagctcctgtacgctcc 729

                                                                        
Query: 567  agtatggacttcgtcaaggcttccagagctcttgatgcacgggcccgtgcatcgtccatg 626
            |  || ||||||  |||  |||| | ||||||||| || || || || |||||| |||||
Sbjct: 728  acgattgacttctccaaaacttctaaagctcttgaggcgcgagcacgcgcatcgcccatg 669

                                                          
Query: 627  tcagaagcatttgacatctctctcacaaaaagatcgacccattcag 672
            ||||| ||||||| ||||||||| ||||| || || ||||||||||
Sbjct: 668  tcagatgcatttgtcatctctctgacaaatagctcaacccattcag 623



to top

>gb|AY596558.1| Saccharum officinarum clone SCVPRT2074F10, complete sequence
          Length = 1366

 Score =  168 bits (85), Expect = 2e-38
 Identities = 337/421 (80%)
 Strand = Plus / Plus

                                                                       
Query: 267 tagaagacgtccgggttgtagcgcccgggcatggagctgctctgctgggcctgcttcaga 326
           |||||||| ||||||||| | ||||| || ||||||||| ||||||| |||||||| || 
Sbjct: 236 tagaagacatccgggttgaaacgcccaggtatggagctgttctgctgagcctgcttgagg 295

                                                                       
Query: 327 tgcatctgcagcgcgtagttgttgatctcaagagtcctcagctgctcctggtactgcagg 386
           |||||    || || |||||||| ||||| || ||||| || ||||||||||||||||  
Sbjct: 296 tgcattgtgagggcatagttgtttatctctagggtcctaagttgctcctggtactgcaaa 355

                                                                       
Query: 387 acgagctgcttcaggccctgcacctcgtggctgcgctcgtcgaactccttctgtcgctca 446
           || || ||||||| || ||| ||||||||    | |||||| |||||||| || ||||||
Sbjct: 356 acaagttgcttcaagctctggacctcgtgagacctctcgtcaaactccttttggcgctca 415

                                                                       
Query: 447 tgctggattgccaccgcgcgcttcaggaccgcgttctgcgacaggacggccgtcatctgc 506
           || || || || || || |||||||| || || ||||    ||| ||  | ||||  |||
Sbjct: 416 tgttgaatggcaactgcccgcttcagcacagcattctctcgcagaacaacagtcagttgc 475

                                                                       
Query: 507 tccttgagcatcatgttctcctgatgcaagctctgcgctgcttcagctcctgcaccctcc 566
           ||||||||||||||||| |||| ||||| | |||| |  |||||||||||||||| ||| 
Sbjct: 476 tccttgagcatcatgttttccttatgcaggttctgtgtagcttcagctcctgcacgctct 535

                                                                       
Query: 567 agtatggacttcgtcaaggcttccagagctcttgatgcacgggcccgtgcatcgtccatg 626
           |  || || |||  ||| || |||| ||||||||| ||||| ||||||||||| || |||
Sbjct: 536 acaatcgatttctccaaagcctccaaagctcttgacgcacgagcccgtgcatcatctatg 595

                                                                       
Query: 627 tcagaagcatttgacatctctctcacaaaaagatcgacccattcagggccactgttactt 686
           ||||||||||||||||||||||| ||||| || || |||||||| | |||| | ||||||
Sbjct: 596 tcagaagcatttgacatctctctgacaaatagctcaacccattcggagccattattactt 655

            
Query: 687 g 687
           |
Sbjct: 656 g 656



to top

>gb|AY104704.1| Zea mays PCO133361 mRNA sequence
          Length = 1333

 Score =  141 bits (71), Expect = 4e-30
 Identities = 317/399 (79%)
 Strand = Plus / Minus

                                                                        
Query: 279  gggttgtagcgcccgggcatggagctgctctgctgggcctgcttcagatgcatctgcagc 338
            |||||| | ||||| || ||||||||| |||| || |||||||| ||||||||    || 
Sbjct: 1106 gggttgaaacgcccaggtatggagctgttctgttgagcctgcttgagatgcattgtgagg 1047

                                                                        
Query: 339  gcgtagttgttgatctcaagagtcctcagctgctcctggtactgcaggacgagctgcttc 398
            ||||||||||| ||||| |||||||| |  ||||||||||||||||| || || ||||||
Sbjct: 1046 gcgtagttgttcatctctagagtcctaacttgctcctggtactgcagaacaagttgcttc 987

                                                                        
Query: 399  aggccctgcacctcgtggctgcgctcgtcgaactccttctgtcgctcatgctggattgcc 458
            | |  ||| ||||||||    | ||||||||||||||| || ||||| ||||| || || 
Sbjct: 986  aagttctggacctcgtgagacctctcgtcgaactccttttggcgctcgtgctgaatggcg 927

                                                                        
Query: 459  accgcgcgcttcaggaccgcgttctgcgacaggacggccgtcatctgctccttgagcatc 518
            || || |||||||| || | |||||    ||| ||  | |||| ||||||||||||||||
Sbjct: 926  actgcccgcttcagcacggagttctctcgcagaacaacagtcaactgctccttgagcatc 867

                                                                        
Query: 519  atgttctcctgatgcaagctctgcgctgcttcagctcctgcaccctccagtatggacttc 578
            ||||| |||| ||||| | | || |  |||||||||||||||| ||| |  || |  |||
Sbjct: 866  atgttttccttatgcaggttttgtgtagcttcagctcctgcacgctctacaatcgttttc 807

                                                                        
Query: 579  gtcaaggcttccagagctcttgatgcacgggcccgtgcatcgtccatgtcagaagcattt 638
              ||| || |||||||||||||| ||||| |||||||||||||  |||||||||||||||
Sbjct: 806  tccaaagcctccagagctcttgacgcacgagcccgtgcatcgtttatgtcagaagcattt 747

                                                   
Query: 639  gacatctctctcacaaaaagatcgacccattcagggcca 677
              ||||||| | || || || || |||||||||| ||||
Sbjct: 746  ctcatctctgtgactaatagctcaacccattcagagcca 708



to top

>gb|BT017489.1| Zea mays clone EL01N0413B02.c mRNA sequence
          Length = 1134

 Score =  139 bits (70), Expect = 1e-29
 Identities = 310/390 (79%)
 Strand = Plus / Minus

                                                                       
Query: 288 cgcccgggcatggagctgctctgctgggcctgcttcagatgcatctgcagcgcgtagttg 347
           ||||| || ||||||||| |||| || |||||||| ||||||||    || |||||||||
Sbjct: 895 cgcccaggtatggagctgttctgttgagcctgcttgagatgcattgtgagggcgtagttg 836

                                                                       
Query: 348 ttgatctcaagagtcctcagctgctcctggtactgcaggacgagctgcttcaggccctgc 407
           || ||||| |||||||| |  ||||||||||||||||| || || ||||||| |  ||| 
Sbjct: 835 ttcatctctagagtcctaacttgctcctggtactgcagaacaagttgcttcaagttctgg 776

                                                                       
Query: 408 acctcgtggctgcgctcgtcgaactccttctgtcgctcatgctggattgccaccgcgcgc 467
           ||||||||    | ||||||||||||||| || ||||| ||||| || || || || |||
Sbjct: 775 acctcgtgagacctctcgtcgaactccttttggcgctcgtgctgaatggcgactgcccgc 716

                                                                       
Query: 468 ttcaggaccgcgttctgcgacaggacggccgtcatctgctccttgagcatcatgttctcc 527
           ||||| || | |||||    ||| ||  | |||| ||||||||||||||||||||| |||
Sbjct: 715 ttcagcacggagttctctcgcagaacaacagtcaactgctccttgagcatcatgttttcc 656

                                                                       
Query: 528 tgatgcaagctctgcgctgcttcagctcctgcaccctccagtatggacttcgtcaaggct 587
           | ||||| | | || |  |||||||||||||||| ||| |  || |  |||  ||| || 
Sbjct: 655 ttatgcagggtttgtgtagcttcagctcctgcacgctctacaatcgttttctccaaagcc 596

                                                                       
Query: 588 tccagagctcttgatgcacgggcccgtgcatcgtccatgtcagaagcatttgacatctct 647
           |||||||||||||| ||||| |||||||||||||  |||||||||||||||  |||||||
Sbjct: 595 tccagagctcttgacgcacgagcccgtgcatcgtttatgtcagaagcatttctcatctct 536

                                         
Query: 648 ctcacaaaaagatcgacccattcagggcca 677
            | || || || || |||||||||| ||||
Sbjct: 535 gtgactaatagctcaacccattcagagcca 506



to top

>gb|AY105502.1| Zea mays PCO135520 mRNA sequence
          Length = 835

 Score =  129 bits (65), Expect = 1e-26
 Identities = 323/409 (78%)
 Strand = Plus / Minus

                                                                       
Query: 279 gggttgtagcgcccgggcatggagctgctctgctgggcctgcttcagatgcatctgcagc 338
           |||||| | ||||| || ||||||||||||||||| |||||||| || |||||    || 
Sbjct: 533 gggttgaaacgcccaggaatggagctgctctgctgagcctgcttgaggtgcattgtgagg 474

                                                                       
Query: 339 gcgtagttgttgatctcaagagtcctcagctgctcctggtactgcaggacgagctgcttc 398
           || |||||||| ||||| || ||||| |  ||||||||||||||||  || || ||||||
Sbjct: 473 gcatagttgtttatctctagtgtcctaacttgctcctggtactgcaaaacaagttgcttc 414

                                                                       
Query: 399 aggccctgcacctcgtggctgcgctcgtcgaactccttctgtcgctcatgctggattgcc 458
           | || ||| ||||||||    | |||||| |||||||| || |||||||| || || || 
Sbjct: 413 aagctctggacctcgtgagacctctcgtcaaactccttttggcgctcatgttgaatggca 354

                                                                       
Query: 459 accgcgcgcttcaggaccgcgttctgcgacaggacggccgtcatctgctccttgagcatc 518
           ||||| |||||||| || || ||||    ||| ||  | ||||  ||||| |||||||||
Sbjct: 353 accgcccgcttcagcacagcattctctcgcagaacaacagtcagttgctctttgagcatc 294

                                                                       
Query: 519 atgttctcctgatgcaagctctgcgctgcttcagctcctgcaccctccagtatggacttc 578
           ||||| |||| ||| | | |||| |  |||||||||||||||| ||| |  || || |||
Sbjct: 293 atgttttccttatgaaggttctgtgtagcttcagctcctgcacgctctacaattgatttc 234

                                                                       
Query: 579 gtcaaggcttccagagctcttgatgcacgggcccgtgcatcgtccatgtcagaagcattt 638
             ||| || |||| |||||| || ||||| ||||||||||| || |||||||||||||||
Sbjct: 233 tccaaagcctccaaagctctggacgcacgagcccgtgcatcatctatgtcagaagcattt 174

                                                            
Query: 639 gacatctctctcacaaaaagatcgacccattcagggccactgttacttg 687
           | |||||| || ||||| || || |||||||||| |||| | |||||||
Sbjct: 173 gtcatctccctgacaaatagctcaacccattcagagccatttttacttg 125



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 103/124 (83%)
 Strand = Plus / Plus

                                                                            
Query: 360      gtcctcagctgctcctggtactgcaggacgagctgcttcaggccctgcacctcgtggctg 419
                |||||||| ||||||||||||||||  || || |||||||  | ||| ||||| ||||| 
Sbjct: 25800508 gtcctcagttgctcctggtactgcacaacaagttgcttcaaactctgaacctcctggctc 25800567

                                                                            
Query: 420      cgctcgtcgaactccttctgtcgctcatgctggattgccaccgcgcgcttcaggaccgcg 479
                | ||||||||||||||| || |||||||| || || || ||||| ||||| ||||| |||
Sbjct: 25800568 ctctcgtcgaactccttttggcgctcatgttgaatggcgaccgctcgcttgaggacagcg 25800627

                    
Query: 480      ttct 483
                ||||
Sbjct: 25800628 ttct 25800631



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 267      tagaagacgtccgggttgtagcgcccgggcatggagctgctctgctgggcctgcttcaga 326
                ||||||||||| || ||| || ||||||| |||||| || ||||||| ||||||||||||
Sbjct: 25800318 tagaagacgtcaggattgaagtgcccggggatggagttgttctgctgagcctgcttcaga 25800377

                                            
Query: 327      tgcatctgcagcgcgtagttgttgatct 354
                ||||||  |||||| |||||||| ||||
Sbjct: 25800378 tgcatcgtcagcgcatagttgtttatct 25800405



to top

>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0416A11
          Length = 171519

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 103/124 (83%)
 Strand = Plus / Plus

                                                                         
Query: 360   gtcctcagctgctcctggtactgcaggacgagctgcttcaggccctgcacctcgtggctg 419
             |||||||| ||||||||||||||||  || || |||||||  | ||| ||||| ||||| 
Sbjct: 82712 gtcctcagttgctcctggtactgcacaacaagttgcttcaaactctgaacctcctggctc 82771

                                                                         
Query: 420   cgctcgtcgaactccttctgtcgctcatgctggattgccaccgcgcgcttcaggaccgcg 479
             | ||||||||||||||| || |||||||| || || || ||||| ||||| ||||| |||
Sbjct: 82772 ctctcgtcgaactccttttggcgctcatgttgaatggcgaccgctcgcttgaggacagcg 82831

                 
Query: 480   ttct 483
             ||||
Sbjct: 82832 ttct 82835



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 267   tagaagacgtccgggttgtagcgcccgggcatggagctgctctgctgggcctgcttcaga 326
             ||||||||||| || ||| || ||||||| |||||| || ||||||| ||||||||||||
Sbjct: 82522 tagaagacgtcaggattgaagtgcccggggatggagttgttctgctgagcctgcttcaga 82581

                                         
Query: 327   tgcatctgcagcgcgtagttgttgatct 354
             ||||||  |||||| |||||||| ||||
Sbjct: 82582 tgcatcgtcagcgcatagttgtttatct 82609



to top

>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence
          Length = 136410

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 164    caacattttctagtcatcttca 185
              ||||||||||||||||||||||
Sbjct: 130219 caacattttctagtcatcttca 130198



to top

>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3,
             complete sequence
          Length = 116999

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 164   caacattttctagtcatcttca 185
             ||||||||||||||||||||||
Sbjct: 13601 caacattttctagtcatcttca 13580



to top

>ref|XM_481520.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 570

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 614 tgcatcgtccatgtcagaagcatttgacatctctctcacaaaaagatcgacccattc 670
           |||||| ||||||| ||||||| ||| ||||||  ||||||  || |||||||||||
Sbjct: 303 tgcatcatccatgttagaagcagttgtcatctcattcacaagtagctcgacccattc 247



to top

>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13,
              complete sequence
          Length = 161902

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 614    tgcatcgtccatgtcagaagcatttgacatctctctcacaaaaagatcgacccattc 670
              |||||| ||||||| ||||||| ||| ||||||  ||||||  || |||||||||||
Sbjct: 111132 tgcatcatccatgttagaagcagttgtcatctcattcacaagtagctcgacccattc 111188



to top

>ref|XM_359981.1| Magnaporthe grisea 70-15 hypothetical protein (MG05356.4) partial
            mRNA
          Length = 3288

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 386  gacgagctgcttcaggccctg 406
            |||||||||||||||||||||
Sbjct: 2346 gacgagctgcttcaggccctg 2326



to top

>gb|BT014353.1| Lycopersicon esculentum clone 133630F, mRNA sequence
          Length = 1423

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 342  tagttgttgatctcaagagtcctcagctgctcctggtactg 382
            ||||| |||| |||||| || || |||||||||||||||||
Sbjct: 1015 tagttattgacctcaagggttctaagctgctcctggtactg 975



to top

>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the
              Vamp2 gene for vesicle-associated membrane 2, the Per1 gene
              for period homolog 1 (Drosophila), the Hes7 gene for hairy
              and enhancer of split 7 (Drosophila), the Aloxe3 gene for
              arachidonate lipoxygenase 3, the Alox12b gene for
              arachidonate 12-lipoxygenase 12R type, the Alox15b gene for
              arachidonate 15-lipoxygenase second type, the Gucy2e gene
              for guanylate cyclase 2e, a novel gene, the gene for
              LYST-interacting protein LIP8 (Lip8-pending), the gene for
              the likely ortholog of H. sapiens trafficking protein
              particle complex 1 (TRAPPC1)), the Kcnab3 gene for
              potassium voltage-gated channel shaker-related subfamily
              beta member 3, a novel gene, the 3' end of the Chd3 gene
              for chromodomain helicase DNA binding protein 3 and six CpG
              islands, complete sequence
          Length = 261224

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     attgttttgtgtatatattaa 34
              |||||||||||||||||||||
Sbjct: 139537 attgttttgtgtatatattaa 139517



to top

>emb|BX248391.22| Zebrafish DNA sequence from clone CH211-212M14 in linkage group 17,
              complete sequence
          Length = 202287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     ttttgtgtatatattaaatac 38
              |||||||||||||||||||||
Sbjct: 161433 ttttgtgtatatattaaatac 161453



to top

>emb|BX539349.17| Zebrafish DNA sequence from clone DKEY-74L17 in linkage group 17,
             complete sequence
          Length = 140881

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttttgtgtatatattaaatac 38
             |||||||||||||||||||||
Sbjct: 59818 ttttgtgtatatattaaatac 59798



to top

>emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 in linkage group 13,
             complete sequence
          Length = 194184

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   aacattttctagtcatcttca 185
             |||||||||||||||||||||
Sbjct: 29610 aacattttctagtcatcttca 29590



to top

>gb|AC132949.4| Mus musculus BAC clone RP24-547H18 from chromosome 7, complete sequence
          Length = 206116

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   agggccagggctcatcaacat 250
             |||||||||||||||||||||
Sbjct: 76677 agggccagggctcatcaacat 76657



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                         
Query: 614      tgcatcgtccatgtcagaagcatttgacatctctctcacaaaaagatcgacccattc 670
                |||||| ||||||| ||||||| ||| ||||||  ||||||  || |||||||||||
Sbjct: 13386659 tgcatcatccatgttagaagcagttgtcatctcattcacaagtagctcgacccattc 13386715



to top

>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1136D08
          Length = 176635

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 614    tgcatcgtccatgtcagaagcatttgacatctctctcacaaaaagatcgacccattc 670
              |||||| ||||||| ||||||| ||| ||||||  ||||||  || |||||||||||
Sbjct: 138128 tgcatcatccatgttagaagcagttgtcatctcattcacaagtagctcgacccattc 138184



to top

>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_B07
          Length = 118763

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 614   tgcatcgtccatgtcagaagcatttgacatctctctcacaaaaagatcgacccattc 670
             |||||| ||||||| ||||||| ||| ||||||  ||||||  || |||||||||||
Sbjct: 23386 tgcatcatccatgttagaagcagttgtcatctcattcacaagtagctcgacccattc 23442



to top

>ref|NM_174370.2| Bos taurus inositol 1,4,5-triphosphate receptor, type 3 (ITPR3), mRNA
          Length = 8294

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 7947 ccgtcatctgctccttgagc 7928



to top

>ref|XM_391186.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG11010.1)
            partial mRNA
          Length = 3237

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gtcagcaaaccaacatccac 139
            ||||||||||||||||||||
Sbjct: 1612 gtcagcaaaccaacatccac 1631



to top

>ref|XM_858469.1| PREDICTED: Canis familiaris similar to Inositol 1,4,5-trisphosphate
           receptor type 3 (Type 3 inositol 1,4,5-trisphosphate
           receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform
           3) (InsP3R3), transcript variant 2 (LOC481746), mRNA
          Length = 1377

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 496 ccgtcatctgctccttgagc 515
           ||||||||||||||||||||
Sbjct: 404 ccgtcatctgctccttgagc 385



to top

>ref|XM_538867.2| PREDICTED: Canis familiaris similar to Inositol 1,4,5-trisphosphate
            receptor type 3 (Type 3 inositol 1,4,5-trisphosphate
            receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform
            3) (InsP3R3), transcript variant 1 (LOC481746), mRNA
          Length = 8855

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 7882 ccgtcatctgctccttgagc 7863



to top

>emb|CR705766.2|CNS0G7IQ Tetraodon nigroviridis full-length cDNA
          Length = 550

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 423 tcgtcgaactccttctgtcgctcatgct 450
           ||||||| ||||||||||||||| ||||
Sbjct: 543 tcgtcgatctccttctgtcgctcctgct 516



to top

>gb|AY358456.1| Homo sapiens clone DNA40571 EDTP308 (UNQ308) mRNA, complete cds
          Length = 2365

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  tgcaggacgagctgcttcaggccc 404
            ||||||| ||||||||||||||||
Sbjct: 1461 tgcaggatgagctgcttcaggccc 1438



to top

>emb|AL356095.11| Human DNA sequence from clone RP11-369J21 on chromosome 10 Contains a
              pseudogene similar to part of homeobox proteins, three
              nuclear DNA binding protein (C1D) pseudogenes, three novel
              genes, a ribosomal protein L22 (RPL22) pseudogene, the 3'
              end of the ANXA11 gene for annexin A11 and two CpG islands,
              complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     tgtgtatatattaaatacga 40
              ||||||||||||||||||||
Sbjct: 124664 tgtgtatatattaaatacga 124683



to top

>ref|NM_002224.1| Homo sapiens inositol 1,4,5-triphosphate receptor, type 3 (ITPR3),
            mRNA
          Length = 8833

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 7990 ccgtcatctgctccttgagc 7971



to top

>dbj|AK093524.1| Homo sapiens cDNA FLJ36205 fis, clone TESTI2028659, highly similar to
            Human type 3 inositol 1,4,5-trisphosphate receptor
            (ITPR3) mRNA
          Length = 1901

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 1059 ccgtcatctgctccttgagc 1040



to top

>gb|AF402601.1| Bos taurus inositol 1,4,5-trisphosphate receptor type 3 mRNA,
            complete cds
          Length = 8294

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 7947 ccgtcatctgctccttgagc 7928



to top

>ref|XM_686252.1| PREDICTED: Danio rerio similar to solute carrier family 9 isoform 3
            regulator 2 isoform A (LOC562884), mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  tcatcaacatcagcctgaag 260
            ||||||||||||||||||||
Sbjct: 1058 tcatcaacatcagcctgaag 1077



to top

>ref|NM_001039503.1| Homo sapiens polyserase 3 (LOC339105), mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  tgcaggacgagctgcttcaggccc 404
            ||||||| ||||||||||||||||
Sbjct: 1112 tgcaggatgagctgcttcaggccc 1089



to top

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     catctgctccttgagcatca 519
               ||||||||||||||||||||
Sbjct: 2574515 catctgctccttgagcatca 2574534



to top

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     gatctcaagagtcctcagct 369
               ||||||||||||||||||||
Sbjct: 5451349 gatctcaagagtcctcagct 5451368



to top

>gb|AC108028.4| Homo sapiens BAC clone RP11-72E18 from 4, complete sequence
          Length = 25320

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tctgtcgctcatgctggatt 455
             ||||||||||||||||||||
Sbjct: 14690 tctgtcgctcatgctggatt 14671



to top

>gb|AC135050.3| Homo sapiens chromosome 16 clone RP11-196G11, complete sequence
          Length = 182230

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 381    tgcaggacgagctgcttcaggccc 404
              ||||||| ||||||||||||||||
Sbjct: 140825 tgcaggatgagctgcttcaggccc 140848



to top

>gb|AC079395.6| Homo sapiens BAC clone RP11-219H23 from 2, complete sequence
          Length = 82827

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   ggccctgcacctcgtggctg 419
             ||||||||||||||||||||
Sbjct: 52238 ggccctgcacctcgtggctg 52219



to top

>gb|AC087591.2| Homo sapiens chromosome 3 clone RP11-95M5 map 3p, complete sequence
          Length = 161014

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   gagtcctcagctgctcctgg 377
             ||||||||||||||||||||
Sbjct: 55145 gagtcctcagctgctcctgg 55126



to top

>gb|AC090957.1| Homo sapiens chromosome 3 clone RP11-708D1 map 3p, complete sequence
          Length = 151677

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    gagtcctcagctgctcctgg 377
              ||||||||||||||||||||
Sbjct: 138992 gagtcctcagctgctcctgg 138973



to top

>dbj|AK131087.1| Homo sapiens mRNA for FLJ00289 protein
          Length = 5491

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  tgcaggacgagctgcttcaggccc 404
            ||||||| ||||||||||||||||
Sbjct: 3982 tgcaggatgagctgcttcaggccc 3959



to top

>ref|XM_311006.2| Anopheles gambiae str. PEST ENSANGP00000008130 (ENSANGG00000006134),
            partial mRNA
          Length = 3261

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 546  gcttcagctcctgcaccctccagt 569
            |||||||||||||||| |||||||
Sbjct: 1231 gcttcagctcctgcacgctccagt 1208



to top

>emb|CR318601.8| Zebrafish DNA sequence from clone CH211-274E20 in linkage group 7,
            complete sequence
          Length = 165501

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   attgttttgtgtatatatta 33
            ||||||||||||||||||||
Sbjct: 2986 attgttttgtgtatatatta 2967



to top

>dbj|D26351.1|HUMHT3I Homo sapiens mRNA for type 3 inositol 1,4,5-trisphosphate receptor,
            complete cds
          Length = 8404

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 8189 ccgtcatctgctccttgagc 8170



to top

>emb|AJ627035.1| Homo sapiens mRNA for polyserase-3
          Length = 1662

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  tgcaggacgagctgcttcaggccc 404
            ||||||| ||||||||||||||||
Sbjct: 1112 tgcaggatgagctgcttcaggccc 1089



to top

>gb|U01062.1|HUMIP3R3 Human type 3 inositol 1,4,5-trisphosphate receptor (ITPR3) mRNA,
            complete cds
          Length = 8833

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 7990 ccgtcatctgctccttgagc 7971



to top

>dbj|AB209739.1| Homo sapiens mRNA for Inositol 1,4,5-trisphosphate receptor type 3
            variant protein
          Length = 7807

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 6965 ccgtcatctgctccttgagc 6946



to top

>emb|AL832807.1|HSM804118 Homo sapiens mRNA; cDNA DKFZp667O0323 (from clone DKFZp667O0323)
          Length = 3697

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 496  ccgtcatctgctccttgagc 515
            ||||||||||||||||||||
Sbjct: 2819 ccgtcatctgctccttgagc 2800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,284,300
Number of Sequences: 3902068
Number of extensions: 6284300
Number of successful extensions: 132514
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132341
Number of HSP's gapped (non-prelim): 166
length of query: 719
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 696
effective length of database: 17,143,297,704
effective search space: 11931735201984
effective search space used: 11931735201984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top