ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
2dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
3ref|XM_474948.1| Oryza sativa (japonica cultivar-group), predic... 64 6e-07
4emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4,... 64 6e-07
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
6ref|XM_474946.1| Oryza sativa (japonica cultivar-group), predic... 56 2e-04
7dbj|AK120831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
8dbj|AK071801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
9gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 42 2.4
10gb|L23649.2| Caenorhabditis elegans cosmid C02C2, complete sequence 42 2.4
11gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10... 42 2.4
12gb|AY803287.1| Blechnum spicant phenylalanine ammonia lyase (PAL... 42 2.4
13gb|AC124180.5| Mus musculus BAC clone RP23-200I16 from 16, compl... 42 2.4
14ref|NM_112905.1| Arabidopsis thaliana CYP705A23; heme binding / ... 40 9.4
15ref|XM_877395.1| PREDICTED: Bos taurus similar to Tubulin delta ... 40 9.4
16ref|XM_877353.1| PREDICTED: Bos taurus similar to Tubulin delta ... 40 9.4
17ref|XM_877305.1| PREDICTED: Bos taurus similar to Tubulin delta ... 40 9.4
18ref|XM_588046.2| PREDICTED: Bos taurus similar to Tubulin delta ... 40 9.4
19ref|XM_865878.1| PREDICTED: Bos taurus similar to Tubulin delta ... 40 9.4
20gb|AF537961.1| Branchiostoma floridae RNA-directed RNA polymeras... 40 9.4
21gb|AC002379.1| Homo sapiens BAC clone GS1-165I4 from 7, complete... 40 9.4
22ref|XM_387851.1| Gibberella zeae PH-1 chromosome 4 predicted pro... 40 9.4
23gb|DQ446676.1| Arabidopsis thaliana clone pENTR221-At3g20140 cyt... 40 9.4
24emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on ... 40 9.4
25emb|AL731653.1| Human DNA sequence from clone RP11-33D13 on chro... 40 9.4
26emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on ch... 40 9.4
27emb|AL136303.15| Human DNA sequence from clone RP1-177P22 on chr... 40 9.4
28gb|AF547386.1| Homo sapiens E2F transcription factor 3 (E2F3) ge... 40 9.4
29gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, comp... 40 9.4
30emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 9.4
31emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene cata... 40 9.4
32gb|AE014180.1| Mus musculus piebald deletion region section 8 of... 40 9.4
33emb|CR524824.5| Mouse DNA sequence from clone WI1-1975M18 on chr... 40 9.4
34gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell... 40 9.4
35gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 9.4
36gb|AC079310.20| Homo sapiens 12 BAC RP11-850F7 (Roswell Park Can... 40 9.4
37gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 40 9.4
38gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, comple... 40 9.4
39gb|AC109829.4| Homo sapiens BAC clone RP11-1217F14 from 2, compl... 40 9.4
40gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.84... 40 9.4
41dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.4
42gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, c... 40 9.4
43gb|AC154407.2| Mus musculus BAC clone RP24-257B4 from 14, comple... 40 9.4
44gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 ... 40 9.4
45emb|AL731766.27| Mouse DNA sequence from clone RP23-78B19 on chr... 40 9.4
46emb|AL845313.9| Mouse DNA sequence from clone RP23-202C2 on chro... 40 9.4
47gb|AC155076.17| Mus musculus chromosome 1, clone RP24-257G18, co... 40 9.4
48gb|L02354.1|PDENQOURF Paracoccus denitrificans NADH dehydrogenas... 40 9.4 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 427      tcagagtagccgatgatggccagctgtgggatcctaggatgcacgcattgcctg 480
                |||| |||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 21397525 tcagcgtagccgatgatcgccagctgtgggatcctaggatggatgcattgcctg 21397578
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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1210_A07
          Length = 131394

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 427   tcagagtagccgatgatggccagctgtgggatcctaggatgcacgcattgcctg 480
             |||| |||||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 14630 tcagcgtagccgatgatcgccagctgtgggatcctaggatggatgcattgcctg 14683
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>ref|XM_474948.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 594  atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
            ||||||||||||||||   ||||| ||||| |||| |||||||| |||||| || || ||
Sbjct: 1092 atcgctctttatcggcgaagattcgccttcaacaagcacaccttcattgcaaaagctaaa 1033

                                            
Query: 654  gctctttgctttcttgagaacaatgcttcctt 685
              |||||| |||||||||||| ||||| ||||
Sbjct: 1032 tgtctttgatttcttgagaacgatgctgcctt 1001
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>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21,
             complete sequence
          Length = 130433

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                         
Query: 594   atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
             ||||||||||||||||   ||||| ||||| |||| |||||||| |||||| || || ||
Sbjct: 33203 atcgctctttatcggcgaagattcgccttcaacaagcacaccttcattgcaaaagctaaa 33262

                                             
Query: 654   gctctttgctttcttgagaacaatgcttcctt 685
               |||||| |||||||||||| ||||| ||||
Sbjct: 33263 tgtctttgatttcttgagaacgatgctgcctt 33294



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                         
Query: 594   atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
             ||||||||||||||||   ||||  |||||||||| ||||||||  ||||| || || ||
Sbjct: 13871 atcgctctttatcggcgaagattggccttcgacaagcacaccttccttgcaaaagctaaa 13930

                                             
Query: 654   gctctttgctttcttgagaacaatgcttcctt 685
               |||||| |||||| ||||||||||| ||||
Sbjct: 13931 tgtctttgatttcttcagaacaatgctgcctt 13962



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 214   cccatgtcctggcacaactggtcattgtaccagatgtg 251
             ||||||||| |||| | ||| |||||||||||||||||
Sbjct: 13390 cccatgtcccggcatagctgatcattgtaccagatgtg 13427
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                           
Query: 594     atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
               ||||||||||||||||   ||||| ||||| |||| |||||||| |||||| || || ||
Sbjct: 8222690 atcgctctttatcggcgaagattcgccttcaacaagcacaccttcattgcaaaagctaaa 8222749

                                               
Query: 654     gctctttgctttcttgagaacaatgcttcctt 685
                 |||||| |||||||||||| ||||| ||||
Sbjct: 8222750 tgtctttgatttcttgagaacgatgctgcctt 8222781



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                           
Query: 594     atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
               ||||||||||||||||   ||||  |||||||||| ||||||||  ||||| || || ||
Sbjct: 8203358 atcgctctttatcggcgaagattggccttcgacaagcacaccttccttgcaaaagctaaa 8203417

                                               
Query: 654     gctctttgctttcttgagaacaatgcttcctt 685
                 |||||| |||||| ||||||||||| ||||
Sbjct: 8203418 tgtctttgatttcttcagaacaatgctgcctt 8203449



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 214     cccatgtcctggcacaactggtcattgtaccagatgtg 251
               ||||||||| |||| | ||| |||||||||||||||||
Sbjct: 8202877 cccatgtcccggcatagctgatcattgtaccagatgtg 8202914
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>ref|XM_474946.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1566

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 594  atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
            ||||||||||||||||   ||||  |||||||||| ||||||||  ||||| || || ||
Sbjct: 1092 atcgctctttatcggcgaagattggccttcgacaagcacaccttccttgcaaaagctaaa 1033

                                            
Query: 654  gctctttgctttcttgagaacaatgcttcctt 685
              |||||| |||||| ||||||||||| ||||
Sbjct: 1032 tgtctttgatttcttcagaacaatgctgcctt 1001



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 214  cccatgtcctggcacaactggtcattgtaccagatgtg 251
            ||||||||| |||| | ||| |||||||||||||||||
Sbjct: 1472 cccatgtcccggcatagctgatcattgtaccagatgtg 1435
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>dbj|AK120831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019L05, full
           insert sequence
          Length = 1003

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 594 atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaactgaa 653
           ||||||||||||||||   ||||  |||||||||| ||||||||  ||||| || || ||
Sbjct: 356 atcgctctttatcggcgaagattggccttcgacaagcacaccttccttgcaaaagctaaa 297

                                           
Query: 654 gctctttgctttcttgagaacaatgcttcctt 685
             |||||| |||||| ||||||||||| ||||
Sbjct: 296 tgtctttgatttcttcagaacaatgctgcctt 265
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>dbj|AK071801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110J22, full
            insert sequence
          Length = 1787

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 214  cccatgtcctggcacaactggtcattgtaccagatgtg 251
            ||||||||| |||| | ||| |||||||||||||||||
Sbjct: 1525 cccatgtcccggcatagctgatcattgtaccagatgtg 1488



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 76/93 (81%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                        
Query: 594  atcgctctttatcggcatggattcaccttcgacaatcacaccttgattgcagaaact-ga 652
            ||||||||||||||||   ||||  |||||||||| ||||||||  ||||| || ||  |
Sbjct: 1145 atcgctctttatcggcgaagattggccttcgacaagcacaccttccttgcaaaagctaaa 1086

                                             
Query: 653  agctctttgctttcttgagaacaatgcttcctt 685
            |  |||||| |||||| ||||||||||| ||||
Sbjct: 1085 atgtctttgatttcttcagaacaatgctgcctt 1053
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 139     atatccttgtaatctgatgga 159
               |||||||||||||||||||||
Sbjct: 1531875 atatccttgtaatctgatgga 1531895
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>gb|L23649.2| Caenorhabditis elegans cosmid C02C2, complete sequence
          Length = 20496

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 112   gatgtcatttgtcacttcttc 132
             |||||||||||||||||||||
Sbjct: 16819 gatgtcatttgtcacttcttc 16839
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>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
             sequence
          Length = 107214

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 473   attgcctgtaaagaggaataatatt 497
             |||||||||||||||| ||||||||
Sbjct: 59091 attgcctgtaaagagggataatatt 59115
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>gb|AY803287.1| Blechnum spicant phenylalanine ammonia lyase (PAL) mRNA, complete
           cds
          Length = 2473

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 89  ttaagagcagcgatggcgcgg 109
           |||||||||||||||||||||
Sbjct: 763 ttaagagcagcgatggcgcgg 743
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>gb|AC124180.5| Mus musculus BAC clone RP23-200I16 from 16, complete sequence
          Length = 199422

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 550   tttagcttttggtctcccttg 570
             |||||||||||||||||||||
Sbjct: 26962 tttagcttttggtctcccttg 26982
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>ref|NM_112905.1| Arabidopsis thaliana CYP705A23; heme binding / iron ion binding /
           monooxygenase/ oxygen binding AT3G20140 (CYP705A23)
           mRNA, complete cds
          Length = 1533

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 533 atgatgtgaacatctctttt 552
           ||||||||||||||||||||
Sbjct: 308 atgatgtgaacatctctttt 327
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>ref|XM_877395.1| PREDICTED: Bos taurus similar to Tubulin delta chain (Delta tubulin),
            transcript variant 6 (LOC510838), mRNA
          Length = 1966

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  atgatgtgaacatctctttt 552
            ||||||||||||||||||||
Sbjct: 1814 atgatgtgaacatctctttt 1833
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>ref|XM_877353.1| PREDICTED: Bos taurus similar to Tubulin delta chain (Delta tubulin),
            transcript variant 5 (LOC510838), mRNA
          Length = 2218

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  atgatgtgaacatctctttt 552
            ||||||||||||||||||||
Sbjct: 2066 atgatgtgaacatctctttt 2085
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>ref|XM_877305.1| PREDICTED: Bos taurus similar to Tubulin delta chain (Delta tubulin),
            transcript variant 4 (LOC510838), mRNA
          Length = 1825

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  atgatgtgaacatctctttt 552
            ||||||||||||||||||||
Sbjct: 1673 atgatgtgaacatctctttt 1692
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>ref|XM_588046.2| PREDICTED: Bos taurus similar to Tubulin delta chain (Delta tubulin),
            transcript variant 1 (LOC510838), mRNA
          Length = 2074

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  atgatgtgaacatctctttt 552
            ||||||||||||||||||||
Sbjct: 1922 atgatgtgaacatctctttt 1941
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>ref|XM_865878.1| PREDICTED: Bos taurus similar to Tubulin delta chain (Delta tubulin),
            transcript variant 3 (LOC510838), mRNA
          Length = 2131

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  atgatgtgaacatctctttt 552
            ||||||||||||||||||||
Sbjct: 1979 atgatgtgaacatctctttt 1998
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>gb|AF537961.1| Branchiostoma floridae RNA-directed RNA polymerase-like protein,
             MGC14327-like protein, and NADPH-dependent FMN and FAD
             containing oxidoreductase-like protein genes, complete cds
          Length = 40786

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tgtcatttagtttgtacaat 46
             ||||||||||||||||||||
Sbjct: 38332 tgtcatttagtttgtacaat 38351
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>gb|AC002379.1| Homo sapiens BAC clone GS1-165I4 from 7, complete sequence
          Length = 118595

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 540   gaacatctcttttagctttt 559
             ||||||||||||||||||||
Sbjct: 92371 gaacatctcttttagctttt 92390
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>ref|XM_387851.1| Gibberella zeae PH-1 chromosome 4 predicted protein (FG07675.1)
           partial mRNA
          Length = 879

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 520 tctctgaacaaggatgatgt 539
           ||||||||||||||||||||
Sbjct: 322 tctctgaacaaggatgatgt 341
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>gb|DQ446676.1| Arabidopsis thaliana clone pENTR221-At3g20140 cytochrome P450
           family protein (At3g20140) mRNA, complete cds
          Length = 1533

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 533 atgatgtgaacatctctttt 552
           ||||||||||||||||||||
Sbjct: 308 atgatgtgaacatctctttt 327
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>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete
              sequence
          Length = 175745

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 304    tattcatcccatttctttatatccatct 331
              ||||||||||||||||| ||| ||||||
Sbjct: 174804 tattcatcccatttcttaataaccatct 174831
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>emb|AL731653.1| Human DNA sequence from clone RP11-33D13 on chromosome 10 Contains the
             gene for pancreatic lipase (PNLIP) and a pseudogene
             similar to part of pancreatic lipase (PNLIP), complete
             sequence
          Length = 65205

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 298   ttcatgtattcatcccatttcttt 321
             |||||||||||||| |||||||||
Sbjct: 57619 ttcatgtattcatcacatttcttt 57642
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>emb|AL365364.19| Human DNA sequence from clone RP11-624L12 on chromosome 10 Contains a
              ribosomal protein L17 (RPL17) pseudogene and the 3'end of
              the FER1L3 gene for fer-1-like 3, myoferlin (C. elegans),
              complete sequence
          Length = 173864

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    aatattggatggtgagccag 511
              ||||||||||||||||||||
Sbjct: 126822 aatattggatggtgagccag 126803
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>emb|AL136303.15| Human DNA sequence from clone RP1-177P22 on chromosome 6 Contains a
             novel gene and the 3' end of the E2F3 gene for E2F
             transcription factor 3 (E2F-3, KIAA0075), complete
             sequence
          Length = 107315

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 304   tattcatcccatttctttatatccatct 331
             ||||||||||||||||| ||| ||||||
Sbjct: 51211 tattcatcccatttcttaatagccatct 51238
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>gb|AF547386.1| Homo sapiens E2F transcription factor 3 (E2F3) gene, complete cds
          Length = 93003

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 304   tattcatcccatttctttatatccatct 331
             ||||||||||||||||| ||| ||||||
Sbjct: 64846 tattcatcccatttcttaatagccatct 64873
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>gb|AC150480.3| Rhinolophus ferrumequinum clone VMRC7-380O7, complete sequence
          Length = 171158

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   catctcttttagcttttggt 562
             ||||||||||||||||||||
Sbjct: 87275 catctcttttagcttttggt 87294
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
              hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    tctttatatccatctccata 336
              ||||||||||||||||||||
Sbjct: 557549 tctttatatccatctccata 557568
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>emb|AJ000330.2|PSSTYCATA Pseudomonas sp. Y2 DNA for styrene catabolism genes
          Length = 29685

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 649  ctgaagctctttgctttctt 668
            ||||||||||||||||||||
Sbjct: 8830 ctgaagctctttgctttctt 8849
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>gb|AE014180.1| Mus musculus piebald deletion region section 8 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 656    tctttgctttcttgagaaca 675
              ||||||||||||||||||||
Sbjct: 322260 tctttgctttcttgagaaca 322279
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>emb|CR524824.5| Mouse DNA sequence from clone WI1-1975M18 on chromosome X, complete
             sequence
          Length = 36161

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   tgtattcatcccatttcttt 321
             ||||||||||||||||||||
Sbjct: 31098 tgtattcatcccatttcttt 31079
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>gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163090

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    tcccatttctttatatccat 329
              ||||||||||||||||||||
Sbjct: 121144 tcccatttctttatatccat 121163
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      agcagcgatggcgcggcaga 113
               ||||||||||||||||||||
Sbjct: 3490242 agcagcgatggcgcggcaga 3490261
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>gb|AC079310.20| Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180971

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcctggcttcacatcccatg 219
             ||||||||||||||||||||
Sbjct: 28439 tcctggcttcacatcccatg 28420
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>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    catctcttttagcttttggt 562
              ||||||||||||||||||||
Sbjct: 500889 catctcttttagcttttggt 500908
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>gb|AC112721.3| Homo sapiens BAC clone RP11-704F14 from 2, complete sequence
          Length = 188829

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    gcaacatccaatctgcaaag 186
              ||||||||||||||||||||
Sbjct: 185985 gcaacatccaatctgcaaag 186004
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>gb|AC109829.4| Homo sapiens BAC clone RP11-1217F14 from 2, complete sequence
          Length = 34012

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   atctccatagattttatgct 347
             ||||||||||||||||||||
Sbjct: 27284 atctccatagattttatgct 27265
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>gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.849_N_15, complete sequence
          Length = 233454

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   cttcacatcccatgtcctgg 225
             ||||||||||||||||||||
Sbjct: 19304 cttcacatcccatgtcctgg 19323
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>dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21
          Length = 83253

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   atgatgtgaacatctctttt 552
             ||||||||||||||||||||
Sbjct: 49700 atgatgtgaacatctctttt 49719
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>gb|AC009716.22| Homo sapiens chromosome 18, clone RP11-504I13, complete sequence
          Length = 211981

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     cttattcctgtcatttagtt 38
              ||||||||||||||||||||
Sbjct: 154464 cttattcctgtcatttagtt 154483
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>gb|AC154407.2| Mus musculus BAC clone RP24-257B4 from 14, complete sequence
          Length = 158436

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    gtattcatcccatttcttta 322
              ||||||||||||||||||||
Sbjct: 102245 gtattcatcccatttcttta 102226
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>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete
             sequence
          Length = 303602

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   tcccatttctttatatccat 329
             ||||||||||||||||||||
Sbjct: 90506 tcccatttctttatatccat 90487
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>emb|AL731766.27| Mouse DNA sequence from clone RP23-78B19 on chromosome 4, complete
             sequence
          Length = 144885

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cctttcttcctcctggcttc 209
             ||||||||||||||||||||
Sbjct: 33210 cctttcttcctcctggcttc 33229
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>emb|AL845313.9| Mouse DNA sequence from clone RP23-202C2 on chromosome 2, complete
             sequence
          Length = 214895

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 654   gctctttgctttcttgagaa 673
             ||||||||||||||||||||
Sbjct: 22287 gctctttgctttcttgagaa 22306
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>gb|AC155076.17| Mus musculus chromosome 1, clone RP24-257G18, complete sequence
          Length = 224817

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    tctttatatccatctccata 336
              ||||||||||||||||||||
Sbjct: 138040 tctttatatccatctccata 138021
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>gb|L02354.1|PDENQOURF Paracoccus denitrificans NADH dehydrogenase (URF4), (NQO8), (NQO9),
            (URF5), (URF6), (NQO10), (NQO11), (NQO12), (NQO13), and
            (NQO14) genes, complete cds's; biotin [acetyl-CoA
            carboxyl] ligase (birA) gene, complete cds
          Length = 10425

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 353  gctgaaatacaccgtcaaggaaat 376
            ||||||||||| ||||||||||||
Sbjct: 1037 gctgaaatacatcgtcaaggaaat 1060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,456,246
Number of Sequences: 3902068
Number of extensions: 6456246
Number of successful extensions: 145983
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145716
Number of HSP's gapped (non-prelim): 267
length of query: 685
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 662
effective length of database: 17,143,297,704
effective search space: 11348863080048
effective search space used: 11348863080048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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