ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15i01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ023305.1| Aegilops tauschii beta1 proteasome-7D mRNA, complete cds Length = 1029 Score = 751 bits (379), Expect = 0.0 Identities = 493/531 (92%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 ||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 829 ttcactggaccatggcatcagagctccccgccgcgagaatgtcgaggagcgagttctggg 770 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| |||||| ||||||||||||||||| |||| ||||| |||||||||||||| || | Sbjct: 769 gctccatctcctcatgccacagtggcagcttgtcgccaggatggaagctcctcttcacgc 710 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 ||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||| | Sbjct: 709 cctcctcatttatagtaacggtgcgaacaacccctccactagcaccatcacgtgcaatag 650 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 649 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcatcccctctttcc 590 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| Sbjct: 589 attcatgatccatcaatccatacagatagctggaaccagatcctccaattgcgaatggtt 530 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||||||||||||||||||||| |||||||||||||||||||| || || |||| Sbjct: 529 gcctcagaatcgttccaccaagagggactgagtaaatttggcctccctcatacttatccc 470 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 469 atccaccaactatcattccagcttgtaacatgctcttgttctgataggccagcaacctaa 410 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 | ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 409 ccaagttggatgcgactttcacggtagctggttgcccaagctgaattgtgtgttggtgga 350 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| || |||||||| ||||||| |||||| |||||||||||||||| Sbjct: 349 gaaaatagcgcacataatctgaaataacttgtgtatcagcagcagatccag 299
>dbj|AK104152.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C07, full insert sequence Length = 999 Score = 567 bits (286), Expect = e-158 Identities = 469/530 (88%) Strand = Plus / Minus Query: 98 tcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctgggg 157 |||||||||||||| ||||| | ||||||| || || ||||| || | |||||||||||| Sbjct: 853 tcactggaccatcggatcagggttcccagcagcaagtatgtcgagcaacgagttctgggg 794 Query: 158 cttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacacc 217 || ||||||||||||||| ||||| ||| ||||||||||||| || ||||| |||||| Sbjct: 793 ctccatctcttcatgccagagtggtagtttgtcaccagggtgaaatttcctcgaaacacc 734 Query: 218 ctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatggc 277 || | || || || || || ||||||||||||||||||||||||||||| || || || Sbjct: 733 atcggcatttatggtgactgtacgaacaacccctccactagcaccatcacgggctatagc 674 Query: 278 aagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcca 337 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| Sbjct: 673 aagggaaaccaccttcaccacaaacttctcagcttcttcctgggacatgccctccttcca 614 Query: 338 ctcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggttg 397 ||||| || | || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 613 ttcatggtcaagcagtccatacaggtaactggaaccagaacctccaattgcaaatggttg 554 Query: 398 cctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccca 457 ||||||||| ||||||||||| ||||| ||| |||||||||| ||||| ||||| ||||| Sbjct: 553 cctcagaattgttccaccaagggggactgagaaaatttggccaccctcatatttatccca 494 Query: 458 tccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaac 517 ||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 493 tccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaat 434 Query: 518 taagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtggag 577 |||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct: 433 taagttggctgcaactttcacagtagctggttgcccaagctgaattgtgtgttggtggag 374 Query: 578 aaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 |||||| |||||||| |||||||| | ||||||||| ||||||||||||| Sbjct: 373 aaaatagcgtacatattccgaaatgacttgtgtgtcggcagcagatccag 324
>ref|XM_507536.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1079_F11.26 mRNA Length = 1070 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 893 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 834 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 833 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 774 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 773 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 714 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 713 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 654 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 653 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 594 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 593 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 534 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 533 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 474 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 473 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 414 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 413 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 363
>ref|XM_468000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1040 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 857 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 798 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 797 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 738 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 737 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 678 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 677 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 618 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 617 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 558 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 557 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 498 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 497 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 438 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 437 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 378 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 377 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 327
>ref|XM_506995.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1079_F11.26 mRNA Length = 1085 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 845 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 786 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 785 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 726 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 725 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 666 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 665 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 606 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 605 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 546 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 545 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 486 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 485 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 426 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 425 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 366 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 365 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 315
>dbj|AK104505.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F11, full insert sequence Length = 1040 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 857 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 798 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 797 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 738 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 737 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 678 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 677 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 618 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 617 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 558 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 557 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 498 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 497 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 438 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 437 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 378 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 377 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 327
>dbj|AK103425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128K18, full insert sequence Length = 1084 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 845 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 786 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 785 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 726 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 725 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 666 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 665 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 606 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 605 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 546 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 545 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 486 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 485 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 426 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 425 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 366 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 365 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 315
>dbj|AK059837.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C07, full insert sequence Length = 1070 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 893 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 834 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 833 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 774 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 773 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 714 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 713 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 654 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 653 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 594 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 593 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 534 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 533 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 474 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 473 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 414 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 413 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 363
>dbj|AB026563.1| Oryza sativa (japonica cultivar-group) OsPBA1 mRNA for beta 1 subunit of 20S proteasome, complete cds Length = 1068 Score = 521 bits (263), Expect = e-145 Identities = 464/531 (87%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 876 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 817 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| || |||||||||||||||| | ||| |||| |||||||| || ||||| ||||| Sbjct: 816 gctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacac 757 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | || |||| ||||| || || ||||||||||||||||||||||||||||| || || | Sbjct: 756 catctgcgtttatagtgacggtacgaacaacccctccactagcaccatcacgggctatag 697 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 696 caagggaaactaccttaaccacaaacttctcagcttcttcctgggacatgccctccttcc 637 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | || || || | ||||||||| |||||||| || || || ||||| ||||||||||||| Sbjct: 636 attcgtggtcaagcaatccatagaggtaactagagcctgaacctccgattgcaaatggtt 577 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 |||||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||| |||| Sbjct: 576 gcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatccc 517 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||||||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||||| Sbjct: 516 atccaccaacaatcatgccagcttgcaacatgttcttgttctgataagccaacaacctaa 457 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 |||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct: 456 ttaagttggctgcaactttcacggtagctggctgcccaagctgaattgtgtgttggtgga 397 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| Sbjct: 396 gaaaatagcgtacataatcggaaattacttgtgtatcagcagcagatccag 346
>gb|AY103685.1| Zea mays PCO069906 mRNA sequence Length = 1201 Score = 426 bits (215), Expect = e-116 Identities = 452/531 (85%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 ||||||| ||||| | ||||| | ||||||| || ||||| ||||| | ||||||||||| Sbjct: 926 ttcactgcaccatgggatcagggttcccagcagcaagaatatcaagcaacgagttctggg 867 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 | | || ||| || |||||||| || || |||| ||||||| ||| ||||||| || | Sbjct: 866 gttccagctcgtcgtgccacaggggtagcttgtcgccagggtaaaagttcctcttcacgc 807 Query: 217 cctcctcgttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatgg 276 | ||| | || || ||||| || || |||||||||||||||||||||||||| || || | Sbjct: 806 catccgcatttattgtaactgtacggacaacccctccactagcaccatcacgggccatag 747 Query: 277 caagggaaaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcc 336 |||||||||| |||||||||||||| ||||| || |||||||| |||| |||||||||| Sbjct: 746 caagggaaactaccttcaccacaaatttctctgcctcttcctgactcattccctctttcc 687 Query: 337 actcatgatccatcaatccatacaggtaactggaaccagatcctccaattgcaaatggtt 396 | |||||||| | | |||| |||||||||||||| || ||||||||||||||||||| Sbjct: 686 attcatgatcaagaagagcatataggtaactggaacctgaacctccaattgcaaatggtt 627 Query: 397 gcctcagaatcgttccaccaagagggacagagtaaatttggcctccctcgtatttgtccc 456 || ||| ||||||||||| |||||||| ||| ||||||||||||||||||| ||||||| Sbjct: 626 gcttcaagatcgttccaccgagagggactgagaaaatttggcctccctcgtacttgtccc 567 Query: 457 atccaccaactatcattccagcttgcaacatgctcttgttctgataggccaataacctaa 516 |||| ||||| ||||| ||||||||||||||| ||||||||||||| || | ||||||| Sbjct: 566 atcctccaacaatcatgccagcttgcaacatgttcttgttctgataagctagcaacctaa 507 Query: 517 ctaagttggatgcaactttcacggtagctggttgcccaagctggattgtgtgctggtgga 576 ||||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct: 506 tcaagttggctgcaactttaacggtagctggttgtccaagctggattgtgtgttggtgga 447 Query: 577 gaaaataacgtacataatccgaaataatttgtgtgtcagcagcagatccag 627 | ||||| ||||||||||||||||| | |||||| |||||||||||||||| Sbjct: 446 ggaaatagcgtacataatccgaaatgacttgtgtatcagcagcagatccag 396
>gb|DQ023303.1| Aegilops tauschii beta1 proteasome-1D gene, complete cds Length = 4452 Score = 333 bits (168), Expect = 4e-88 Identities = 219/232 (94%), Gaps = 3/232 (1%) Strand = Plus / Minus Query: 1 agttgtaataaca-ggaggaaaacaagttggtgtcagcagaatctattccag-caacgtt 58 ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 4151 agttgtaataacaaggtggaaaacaagttggtgtcagcagaatctattccaaacaacgtt 4092 Query: 59 cggcccaaatctagaacaagacatcggtacaatagg-atttcactggaccatcgcatcag 117 |||| || |||||||||||| |||| |||||||||| ||||||||||||||||||||||| Sbjct: 4091 cggctcacatctagaacaagtcatcagtacaatagggatttcactggaccatcgcatcag 4032 Query: 118 agctcccagctgcgagaatgtcaaggagcgagttctggggcttcatctcttcatgccaca 177 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4031 agctcccagctgcgagaatgtcaaggagcgagttctggggctccatctcttcatgccaca 3972 Query: 178 gtggcagtatgtcaccagggtggaagctcctcttaacaccctcctcgttaat 229 |||||||| ||||||| |||||||||||||||||||||||| |||||||||| Sbjct: 3971 gtggcagtttgtcaccggggtggaagctcctcttaacacccgcctcgttaat 3920 Score = 196 bits (99), Expect = 6e-47 Identities = 111/115 (96%) Strand = Plus / Minus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct: 2518 cctccaattgcgaatggctgcctcagaatcgtaccaccaagagggaccgagtaaatttgg 2459 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatgctct 492 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2458 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatgctct 2404 Score = 145 bits (73), Expect = 2e-31 Identities = 73/73 (100%) Strand = Plus / Minus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2301 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 2242 Query: 551 cccaagctggatt 563 ||||||||||||| Sbjct: 2241 cccaagctggatt 2229 Score = 137 bits (69), Expect = 5e-29 Identities = 75/77 (97%) Strand = Plus / Minus Query: 230 agtaacagtgcgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccac 289 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 3381 agtaacagtgcgaacaacccctccactagcaccatcacgggcaatagcaagggaaaccac 3322 Query: 290 cttcaccacaaacttct 306 ||||||||||||||||| Sbjct: 3321 cttcaccacaaacttct 3305 Score = 135 bits (68), Expect = 2e-28 Identities = 74/76 (97%) Strand = Plus / Minus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 2900 ctcagcttcttcctgggtcataccctctttccattcatgatccatcaatccataaaggta 2841 Query: 365 actggaaccagatcct 380 |||||||||||||||| Sbjct: 2840 actggaaccagatcct 2825 Score = 95.6 bits (48), Expect = 2e-16 Identities = 54/56 (96%) Strand = Plus / Minus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct: 2067 gtgtgctggtggagaaaataacgaacataatccgaaataacttgtgtgtcagcagc 2012
>gb|DQ023304.1| Aegilops tauschii beta1 proteasome-7D gene, complete cds Length = 6037 Score = 180 bits (91), Expect = 4e-42 Identities = 109/115 (94%) Strand = Plus / Minus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3725 cctccaattgcgaatggttgcctcagaatcgttccaccaagagggactgagtaaatttgg 3666 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatgctct 492 |||||||| || || ||||||||||||||||||||||||||||| |||||||||| Sbjct: 3665 cctccctcatacttatcccatccaccaactatcattccagcttgtaacatgctct 3611 Score = 157 bits (79), Expect = 5e-35 Identities = 115/127 (90%) Strand = Plus / Minus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 ||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 4992 ttcactggaccatggcatcagagctccccgccgcgagaatgtcgaggagcgagttctggg 4933 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtggaagctcctcttaacac 216 ||| |||||| ||||||||||||||||| |||| ||||| |||||||||||||| || | Sbjct: 4932 gctccatctcctcatgccacagtggcagcttgtcgccaggatggaagctcctcttcacgc 4873 Query: 217 cctcctc 223 ||||||| Sbjct: 4872 cctcctc 4866 Score = 129 bits (65), Expect = 1e-26 Identities = 74/77 (96%) Strand = Plus / Minus Query: 230 agtaacagtgcgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccac 289 |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 4478 agtaacggtgcgaacaacccctccactagcaccatcacgtgcaatagcaagggaaaccac 4419 Query: 290 cttcaccacaaacttct 306 ||||||||||||||||| Sbjct: 4418 cttcaccacaaacttct 4402 Score = 119 bits (60), Expect = 1e-23 Identities = 72/76 (94%) Strand = Plus / Minus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 4052 ctcagcttcttcctgggtcatcccctctttccattcatgatccatcaatccatacagata 3993 Query: 365 actggaaccagatcct 380 ||||||||||||||| Sbjct: 3992 gctggaaccagatcct 3977 Score = 105 bits (53), Expect = 2e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 3530 cttgttctgataggccagcaacctaaccaagttggatgcgactttcacggtagctggttg 3471 Query: 551 cccaagctg 559 ||||||||| Sbjct: 3470 cccaagctg 3462 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||| |||||||||||||| || |||||||| ||||||| |||||| |||||||| Sbjct: 3296 gtgtgttggtggagaaaatagcgcacataatctgaaataacttgtgtatcagcagc 3241
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct: 2091791 cctccaattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttgg 2091850 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatg 488 || ||||| ||||| |||||||||||||| ||||| ||||||||||||||| Sbjct: 2091851 ccaccctcatatttatcccatccaccaacaatcatgccagcttgcaacatg 2091901 Score = 109 bits (55), Expect = 1e-20 Identities = 64/67 (95%) Strand = Plus / Plus Query: 240 cgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccaca 299 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 2091055 cgaacaacccctccactagcaccatcacgggctatagcaagggaaaccaccttcaccaca 2091114 Query: 300 aacttct 306 ||||||| Sbjct: 2091115 aacttct 2091121 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 98 tcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctgggg 157 |||||||||||||| ||||| | ||||||| || || ||||| || | |||||||||||| Sbjct: 2090427 tcactggaccatcggatcagggttcccagcagcaagtatgtcgagcaacgagttctgggg 2090486 Query: 158 cttcatctcttcatgccacagtggcagtatgtcaccagggtg 199 || ||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 2090487 ctccatctcttcatgccagagtggtagtttgtcaccagggtg 2090528 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 |||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 2092036 cttgttctgataagccaacaacctaattaagttggctgcaactttcacagtagctggttg 2092095 Query: 551 cccaagctg 559 ||||||||| Sbjct: 2092096 cccaagctg 2092104 Score = 81.8 bits (41), Expect = 3e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||| ||| ||||| ||||| ||||| || | || |||||||||||| Sbjct: 2091334 ctcagcttcttcctgggacatgccctccttccattcatggtcaagcagtccatacaggta 2091393 Query: 365 actggaaccagatcctccaat 385 |||||||||||| ||| |||| Sbjct: 2091394 actggaaccagaacctgcaat 2091414 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||| |||||||||||||| |||||||| |||||||| | ||||||||| ||||| Sbjct: 2092291 gtgtgttggtggagaaaatagcgtacatattccgaaatgacttgtgtgtcggcagc 2092346
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct: 32485179 cctccgattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttgg 32485238 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatg 488 |||||||| ||||| |||||||||||||| ||||| ||||||||||||||| Sbjct: 32485239 cctccctcatatttatcccatccaccaacaatcatgccagcttgcaacatg 32485289 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 |||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||| || Sbjct: 32485476 cttgttctgataagccaacaacctaattaagttggctgcaactttcacggtagctggctg 32485535 Query: 551 cccaagctg 559 ||||||||| Sbjct: 32485536 cccaagctg 32485544 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 240 cgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccaca 299 ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||| Sbjct: 32484427 cgaacaacccctccactagcaccatcacgggctatagcaagggaaactaccttaaccaca 32484486 Query: 300 aacttct 306 ||||||| Sbjct: 32484487 aacttct 32484493 Score = 85.7 bits (43), Expect = 2e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 32483734 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 32483793 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtg 199 ||| || |||||||||||||||| | ||| |||| |||||||| Sbjct: 32483794 gctccagctcttcatgccacagttgtagtttgtctccagggtg 32483836 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||| |||||||||||||| ||||||||||| ||||| | |||||| |||||||| Sbjct: 32485674 gtgtgttggtggagaaaatagcgtacataatcggaaattacttgtgtatcagcagc 32485729 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||| ||| ||||| ||||| || || || | ||||||||| ||||| Sbjct: 32484707 ctcagcttcttcctgggacatgccctccttccattcgtggtcaagcaatccatagaggta 32484766 Query: 365 act 367 ||| Sbjct: 32484767 act 32484769
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct: 112653 cctccaattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttgg 112712 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatg 488 || ||||| ||||| |||||||||||||| ||||| ||||||||||||||| Sbjct: 112713 ccaccctcatatttatcccatccaccaacaatcatgccagcttgcaacatg 112763 Score = 109 bits (55), Expect = 1e-20 Identities = 64/67 (95%) Strand = Plus / Plus Query: 240 cgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccaca 299 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 111917 cgaacaacccctccactagcaccatcacgggctatagcaagggaaaccaccttcaccaca 111976 Query: 300 aacttct 306 ||||||| Sbjct: 111977 aacttct 111983 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 98 tcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctgggg 157 |||||||||||||| ||||| | ||||||| || || ||||| || | |||||||||||| Sbjct: 111289 tcactggaccatcggatcagggttcccagcagcaagtatgtcgagcaacgagttctgggg 111348 Query: 158 cttcatctcttcatgccacagtggcagtatgtcaccagggtg 199 || ||||||||||||||| ||||| ||| ||||||||||||| Sbjct: 111349 ctccatctcttcatgccagagtggtagtttgtcaccagggtg 111390 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 |||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||||||||| Sbjct: 112898 cttgttctgataagccaacaacctaattaagttggctgcaactttcacagtagctggttg 112957 Query: 551 cccaagctg 559 ||||||||| Sbjct: 112958 cccaagctg 112966 Score = 81.8 bits (41), Expect = 3e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||| ||| ||||| ||||| ||||| || | || |||||||||||| Sbjct: 112196 ctcagcttcttcctgggacatgccctccttccattcatggtcaagcagtccatacaggta 112255 Query: 365 actggaaccagatcctccaat 385 |||||||||||| ||| |||| Sbjct: 112256 actggaaccagaacctgcaat 112276 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||| |||||||||||||| |||||||| |||||||| | ||||||||| ||||| Sbjct: 113153 gtgtgttggtggagaaaatagcgtacatattccgaaatgacttgtgtgtcggcagc 113208
>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1079_F11 Length = 122402 Score = 149 bits (75), Expect = 1e-32 Identities = 102/111 (91%) Strand = Plus / Plus Query: 378 cctccaattgcaaatggttgcctcagaatcgttccaccaagagggacagagtaaatttgg 437 ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct: 88572 cctccgattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttgg 88631 Query: 438 cctccctcgtatttgtcccatccaccaactatcattccagcttgcaacatg 488 |||||||| ||||| |||||||||||||| ||||| ||||||||||||||| Sbjct: 88632 cctccctcatatttatcccatccaccaacaatcatgccagcttgcaacatg 88682 Score = 97.6 bits (49), Expect = 4e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 491 cttgttctgataggccaataacctaactaagttggatgcaactttcacggtagctggttg 550 |||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||| || Sbjct: 88869 cttgttctgataagccaacaacctaattaagttggctgcaactttcacggtagctggctg 88928 Query: 551 cccaagctg 559 ||||||||| Sbjct: 88929 cccaagctg 88937 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 240 cgaacaacccctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccaca 299 ||||||||||||||||||||||||||||| || || ||||||||||| ||||| |||||| Sbjct: 87820 cgaacaacccctccactagcaccatcacgggctatagcaagggaaactaccttaaccaca 87879 Query: 300 aacttct 306 ||||||| Sbjct: 87880 aacttct 87886 Score = 85.7 bits (43), Expect = 2e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 97 ttcactggaccatcgcatcagagctcccagctgcgagaatgtcaaggagcgagttctggg 156 |||| |||||||||| ||||| | |||||||||| || ||||| || | ||||||||||| Sbjct: 87127 ttcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggg 87186 Query: 157 gcttcatctcttcatgccacagtggcagtatgtcaccagggtg 199 ||| || |||||||||||||||| | ||| |||| |||||||| Sbjct: 87187 gctccagctcttcatgccacagttgtagtttgtctccagggtg 87229 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaataatttgtgtgtcagcagc 619 ||||| |||||||||||||| ||||||||||| ||||| | |||||| |||||||| Sbjct: 89067 gtgtgttggtggagaaaatagcgtacataatcggaaattacttgtgtatcagcagc 89122 Score = 54.0 bits (27), Expect = 6e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 305 ctcagcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggta 364 ||||||||||||||||| ||| ||||| ||||| || || || | ||||||||| ||||| Sbjct: 88100 ctcagcttcttcctgggacatgccctccttccattcgtggtcaagcaatccatagaggta 88159 Query: 365 act 367 ||| Sbjct: 88160 act 88162
>emb|Z99979.1|MAZ99979 Musa acuminata mRNA for unknown ripening-related protein (clone pBAN EU97) Length = 736 Score = 83.8 bits (42), Expect = 6e-13 Identities = 95/113 (84%) Strand = Plus / Minus Query: 354 ccatacaggtaactggaaccagatcctccaattgcaaatggttgcctcagaatcgttcca 413 ||||| ||||| ||||||||||||| ||| || ||||| |||||| |||| || || || Sbjct: 445 ccataaaggtagctggaaccagatcntccgatagcaaaaggttgcttcagtattgtccct 386 Query: 414 ccaagagggacagagtaaatttggcctccctcgtatttgtcccatccaccaac 466 ||||| || || || || ||||| ||||| ||||||||||||||||||||||| Sbjct: 385 ccaagtggcacggaatatatttgacctccttcgtatttgtcccatccaccaac 333
>gb|DQ123980.1| Coffea arabica x Coffea canephora clone HT-SSH1-G10 mRNA sequence Length = 334 Score = 71.9 bits (36), Expect = 2e-09 Identities = 95/115 (82%) Strand = Plus / Minus Query: 224 gttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatggcaaggga 283 ||||||||| ||||| |||| || || ||||| |||||||| |||||||||||||| || Sbjct: 188 gttaatagtcacagtccgaantacacccccactggcaccatctcgagcaatggcaagaga 129 Query: 284 aaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttccac 338 ||| | || ||||| || | |||||||||||| |||||||| || || |||||| Sbjct: 128 aacagctttgaccaccaattgctcagcttcttcttgggtcatcccttccttccac 74
>emb|CR940307.5| M.truncatula DNA sequence from clone MTH2-21G21 on chromosome 3, complete sequence Length = 115223 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 243 acaacccctccactagcaccatcacgagcaatggcaagggaaac 286 ||||| || ||||||||||||||||||||||||||||| ||||| Sbjct: 64466 acaactccgccactagcaccatcacgagcaatggcaagtgaaac 64423
>emb|Y09505.1|NTY09505 N.tabacum mRNA for delta proteasome subunit Length = 978 Score = 60.0 bits (30), Expect = 9e-06 Identities = 93/114 (81%) Strand = Plus / Minus Query: 224 gttaatagtaacagtgcgaacaacccctccactagcaccatcacgagcaatggcaaggga 283 ||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| || Sbjct: 623 gttaatagttacagtccggacaactccaccactagcaccatctcgtgcaatggcaagaga 564 Query: 284 aaccaccttcaccacaaacttctcagcttcttcctgggtcataccctctttcca 337 || | | ||||| | |||||||||||||| || ||||| || |||||||| Sbjct: 563 tactgcagtgaccaccagtttctcagcttcttcttgagtcattccttctttcca 510
>gb|AY518885.1| Brassica napus putative proteasome 20S beta1.1 subunit mRNA, partial cds Length = 518 Score = 52.0 bits (26), Expect = 0.002 Identities = 119/150 (79%) Strand = Plus / Minus Query: 249 cctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccacaaacttctca 308 |||||||| || |||||||| || ||||| || |||||| ||||||| |||| | |||| Sbjct: 458 cctccactggctccatcacgggcgatggctagtgaaaccgccttcacaacaagttgctca 399 Query: 309 gcttcttcctgggtcataccctctttccactcatgatccatcaatccatacaggtaactg 368 |||||||| | |||||| |||||||| | ||||| | || || || |||||||| Sbjct: 398 gcttcttctttggtcatgttttctttccaggcctgatcaaagaacccgtaaaggtaactc 339 Query: 369 gaaccagatcctccaattgcaaatggttgc 398 || ||||| |||||||| ||||| |||||| Sbjct: 338 gagccagagcctccaatagcaaacggttgc 309
>gb|AY518884.1| Brassica napus putative proteasome 20S beta1 subunit mRNA, partial cds Length = 526 Score = 50.1 bits (25), Expect = 0.009 Identities = 64/77 (83%) Strand = Plus / Minus Query: 249 cctccactagcaccatcacgagcaatggcaagggaaaccaccttcaccacaaacttctca 308 |||||||| || |||||||| || ||||| || |||||| ||||||| |||| | |||| Sbjct: 458 cctccactggctccatcacgggcgatggctagtgaaaccgccttcacaacaagttgctca 399 Query: 309 gcttcttcctgggtcat 325 |||||||| | |||||| Sbjct: 398 gcttcttctttggtcat 382
>gb|AC130799.19| Medicago truncatula clone mth2-34b13, complete sequence Length = 133305 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 252 ccactagcaccatcacgagcaatggcaag 280 |||||| |||||||||||||||||||||| Sbjct: 8913 ccactatcaccatcacgagcaatggcaag 8941
>gb|AC123981.18| Pan troglodytes clone rp43-130h22, complete sequence Length = 172816 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 404 aatcgttccaccaagagggacagagta 430 ||||||||||||||||| ||||||||| Sbjct: 126299 aatcgttccaccaagagagacagagta 126273
>emb|AL109630.2|DMBR7A4 Drosophila melanogaster BAC clone BACR7A4 Length = 212370 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 601 taatttgtgtgtcagcagcaga 622 |||||||||||||||||||||| Sbjct: 144083 taatttgtgtgtcagcagcaga 144104
>emb|BX571738.12| Zebrafish DNA sequence from clone CH211-64K10 in linkage group 16, complete sequence Length = 141217 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 570 tggtggagaaaataacgtacataatc 595 ||||||||||||||| |||||||||| Sbjct: 123098 tggtggagaaaataatgtacataatc 123123
>gb|AC104287.8| Drosophila melanogaster X BAC RP98-29P19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169557 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 601 taatttgtgtgtcagcagcaga 622 |||||||||||||||||||||| Sbjct: 147327 taatttgtgtgtcagcagcaga 147306
>gb|AC097726.4| Drosophila melanogaster X BAC RP98-5N14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 146717 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 601 taatttgtgtgtcagcagcaga 622 |||||||||||||||||||||| Sbjct: 144452 taatttgtgtgtcagcagcaga 144473
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 601 taatttgtgtgtcagcagcaga 622 |||||||||||||||||||||| Sbjct: 120779 taatttgtgtgtcagcagcaga 120800
>gb|BC099674.1| Mus musculus sorting nexin family member 30, mRNA (cDNA clone MGC:106086 IMAGE:4950374), complete cds Length = 2251 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 703 ccttcaccacaaacttctcag 683
>ref|XM_866459.1| PREDICTED: Bos taurus similar to Eosinophil peroxidase precursor (EPO) (LOC614820), mRNA Length = 864 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 acttctcagcttcttcctggg 321 ||||||||||||||||||||| Sbjct: 130 acttctcagcttcttcctggg 110
>emb|AJ586793.1| Humulus lupulus microsatellite DNA, clone EMFV021 Length = 547 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 564 gtgtgctggtggagaaaataacgtacataatccgaaa 600 |||||||| || ||||||||||| ||||| ||||||| Sbjct: 46 gtgtgctgatgaagaaaataacgcacatagtccgaaa 82
>dbj|AK147437.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1041I08 product:Hypothetical PX domain structure containing protein, full insert sequence Length = 7506 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 909 ccttcaccacaaacttctcag 889
>dbj|AK165619.1| Mus musculus submandibular gland CRL-1734 SCA-9 clone 15 cDNA, RIKEN full-length enriched library, clone:G430069J03 product:Hypothetical PX domain structure containing protein, full insert sequence Length = 2281 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 717 ccttcaccacaaacttctcag 697
>dbj|AK170999.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630215N16 product:Hypothetical PX domain structure containing protein, full insert sequence Length = 2244 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 709 ccttcaccacaaacttctcag 689
>emb|AL928630.15| Mouse DNA sequence from clone RP23-33P17 on chromosome 4, complete sequence Length = 202295 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 ccaagagggacagagtaaatt 434 ||||||||||||||||||||| Sbjct: 95844 ccaagagggacagagtaaatt 95864
>dbj|AK170774.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630119G02 product:Hypothetical PX domain structure containing protein, full insert sequence Length = 2215 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 681 ccttcaccacaaacttctcag 661
>dbj|AK029012.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732481H14 product:hypothetical PX domain structure containing protein, full insert sequence Length = 2341 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 709 ccttcaccacaaacttctcag 689
>ref|XM_232945.3| PREDICTED: Rattus norvegicus similar to Sorting nexin 7 (predicted) (LOC298033), mRNA Length = 1857 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 700 ccttcaccacaaacttctcag 680
>ref|NM_172468.2| Mus musculus sorting nexin family member 30 (Snx30), mRNA Length = 7507 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 907 ccttcaccacaaacttctcag 887
>emb|AL732317.13| Mouse DNA sequence from clone RP23-139F8 on chromosome 2, complete sequence Length = 222471 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 aaaccaccttcaccacaaact 303 ||||||||||||||||||||| Sbjct: 191393 aaaccaccttcaccacaaact 191413
>emb|AL591478.19| Mouse DNA sequence from clone RP23-140D14 on chromosome 2, complete sequence Length = 236979 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 13 aggaggaaaacaagttggtgtcagcagaa 41 ||||||||||||||||||| | ||||||| Sbjct: 5934 aggaggaaaacaagttggttttagcagaa 5906
>emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chromosome 4, complete sequence Length = 188894 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 ccttcaccacaaacttctcag 309 ||||||||||||||||||||| Sbjct: 76379 ccttcaccacaaacttctcag 76359
>gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, complete sequence Length = 195116 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 catcaatccatacaggtaac 366 |||||||||||||||||||| Sbjct: 121465 catcaatccatacaggtaac 121446
>ref|XM_869047.1| PREDICTED: Bos taurus similar to Tetratricopeptide repeat protein 7B (Tetratricopeptide repeat protein 7-like-1) (LOC616909), mRNA Length = 3177 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 caaacttctcagcttcttcc 317 |||||||||||||||||||| Sbjct: 1729 caaacttctcagcttcttcc 1710
>gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, complete sequence Length = 176264 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 caagggaaaccaccttcacc 296 |||||||||||||||||||| Sbjct: 132320 caagggaaaccaccttcacc 132339
>gb|AC121816.3| Mus musculus BAC clone RP23-458H21 from chromosome 3, complete sequence Length = 173593 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 caagggaaaccaccttcacc 296 |||||||||||||||||||| Sbjct: 89779 caagggaaaccaccttcacc 89760
>gb|AC137827.20| Medicago truncatula clone mth2-20g23, complete sequence Length = 105959 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cacaaacttctcagcttctt 315 |||||||||||||||||||| Sbjct: 87418 cacaaacttctcagcttctt 87399
>emb|AL139404.9| Human DNA sequence from clone RP11-376D11 on chromosome 10 Contains the 5' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, complete sequence Length = 122913 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gcaaatggttgcctcagaat 406 |||||||||||||||||||| Sbjct: 87025 gcaaatggttgcctcagaat 87006
>gb|AC048351.18| Homo sapiens 3 BAC RP11-175P19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161687 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 atgctcttgttctgataggc 505 |||||||||||||||||||| Sbjct: 44683 atgctcttgttctgataggc 44664
>gb|AC023520.7| Homo sapiens, clone RP11-16M22, complete sequence Length = 134774 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggtggaagctcctcttaaca 215 |||||||||||||||||||| Sbjct: 81453 ggtggaagctcctcttaaca 81434
>ref|XM_393321.2| PREDICTED: Apis mellifera similar to proteasome delta (LOC409831), mRNA Length = 654 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 369 gaaccagatcctccaattgcaaatggttgcct 400 ||||||||||||||||| | || ||||||||| Sbjct: 359 gaaccagatcctccaatggaaattggttgcct 328
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tccatacaggtaactggaac 372 |||||||||||||||||||| Sbjct: 3587581 tccatacaggtaactggaac 3587562
>dbj|AP002987.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-428C14, complete sequence Length = 166893 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 tcttgttctgataggccaat 509 |||||||||||||||||||| Sbjct: 117829 tcttgttctgataggccaat 117810
>dbj|AP002850.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB87D5 Length = 98988 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggtggaagctcctcttaaca 215 |||||||||||||||||||| Sbjct: 190 ggtggaagctcctcttaaca 171
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tccatacaggtaactggaac 372 |||||||||||||||||||| Sbjct: 3587526 tccatacaggtaactggaac 3587507
>dbj|AP005359.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1470F2, complete sequence Length = 164913 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggtggaagctcctcttaaca 215 |||||||||||||||||||| Sbjct: 149489 ggtggaagctcctcttaaca 149470
>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 122128 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 tccatacaggtaactggaac 372 |||||||||||||||||||| Sbjct: 101847 tccatacaggtaactggaac 101866
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tccatacaggtaactggaac 372 |||||||||||||||||||| Sbjct: 102509 tccatacaggtaactggaac 102490
>emb|AL831776.3| Mouse DNA sequence from clone RP23-307M2 on chromosome 4, complete sequence Length = 204136 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 562 ttgtgtgctggtggagaaaataac 585 |||| ||||||||||||||||||| Sbjct: 182034 ttgtctgctggtggagaaaataac 182057 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,328,170 Number of Sequences: 3902068 Number of extensions: 5328170 Number of successful extensions: 111624 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111420 Number of HSP's gapped (non-prelim): 202 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
