ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067315.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 2e-50
2gb|BT016281.1| Zea mays clone Contig114 mRNA sequence 174 2e-40
3gb|AY108636.1| Zea mays PCO138259 mRNA sequence 170 3e-39
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
5dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
6dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
7emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 i... 44 0.54
8gb|AC124454.4| Mus musculus BAC clone RP24-228I9 from chromosome... 42 2.1
9gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Can... 42 2.1
10gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete s... 42 2.1
11gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 ... 42 2.1
12gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
13gb|AC147390.4| Pan troglodytes BAC clone RP43-51G14 from 7, comp... 40 8.4
14gb|AC149431.1| Populus trichocarpa clone Pop1-124P06, complete s... 40 8.4
15gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
16emb|AL589741.11| Human DNA sequence from clone RP11-372M18 on ch... 40 8.4
17emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chro... 40 8.4
18emb|AL121961.8|HSJ104A17 Human DNA sequence from clone RP1-104A1... 40 8.4
19emb|BX046505.1|CNS0981P Single read from an extremity of a full-... 40 8.4
20emb|BX017376.1|CNS08LKK Single read from an extremity of a full-... 40 8.4
21emb|BX017375.1|CNS08LKJ Single read from an extremity of a full-... 40 8.4
22emb|BX005723.1|CNS08CKV Single read from an extremity of a full-... 40 8.4
23gb|AC102803.3| Homo sapiens chromosome 18, clone RP11-454J3, com... 40 8.4
24gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map... 40 8.4
25gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, compl... 40 8.4
26gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-73... 40 8.4
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
29gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complet... 40 8.4
30gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complet... 40 8.4
31dbj|AB011405.1| Actinobacillus sp. cdta cdtb cdtc genes for Cyto... 40 8.4
32emb|BX284669.12| Zebrafish DNA sequence from clone CH211-280E18 ... 40 8.4
33gb|AF006830.1|AF006830 Actinobacillus actinomycetemcomitans cyto... 40 8.4
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
36emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007... 40 8.4
37emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494... 40 8.4
38emb|AL928683.8| Mouse DNA sequence from clone RP23-78O17 on chro... 40 8.4
39emb|AL591390.8| Mouse DNA sequence from clone RP23-355L10 on chr... 40 8.4
40dbj|AB017807.1| Actinobacillus actinomycetemcomitans cdtA, cdtB ... 40 8.4 
>dbj|AK067315.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105L15, full
            insert sequence
          Length = 3653

 Score =  208 bits (105), Expect = 2e-50
 Identities = 242/285 (84%), Gaps = 2/285 (0%)
 Strand = Plus / Minus

                                                                        
Query: 245  gaaccgtctttggttgtagcgtcttcagccatgtcgacctcagccatcgcagaatcaaca 304
            ||||| ||||||||||| || |||||| | ||||| |||||| |||| |||   |||| |
Sbjct: 3362 gaaccatctttggttgtggcttcttcaccaatgtcaacctcacccattgcatcgtcaata 3303

                                                                        
Query: 305  agagccttgagatcctcttctgcggtcttggccctgtcattgtagtcttgaagttgaaga 364
            |||| || ||| |||| ||| |   ||||  ||||||||||||||||||||||||| |||
Sbjct: 3302 agagactggagctccttttcagacatcttcaccctgtcattgtagtcttgaagttgcaga 3243

                                                                        
Query: 365  aaacttttgtacagctttgtgacagtcaattgtcgctctgaagaaactttccgcgcagca 424
            |||| ||||||||||||||| |||  ||||||||| ||||||||||||||||| ||||||
Sbjct: 3242 aaacatttgtacagctttgtaacaaccaattgtcgttctgaagaaactttccgtgcagca 3183

                                                                        
Query: 425  gccaattcatcctccagtttctgaaatttcttttgcaaatctgcaatgtggtgat-cttt 483
            | |||||||||||| |  |||||  || |||||||||||||||||||||| || | ||||
Sbjct: 3182 gacaattcatcctctaacttctgggatctcttttgcaaatctgcaatgtgttgttccttt 3123

                                                         
Query: 484  gcttgtaactttatctttgatctgagaaacctcattttcaaggtc 528
            || || |||||||||||||||||||  ||||||||||||||||||
Sbjct: 3122 gc-tgcaactttatctttgatctgactaacctcattttcaaggtc 3079
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>gb|BT016281.1| Zea mays clone Contig114 mRNA sequence
          Length = 899

 Score =  174 bits (88), Expect = 2e-40
 Identities = 313/388 (80%)
 Strand = Plus / Minus

                                                                       
Query: 230 ccgttctcataccccgaaccgtctttggttgtagcgtcttcagccatgtcgacctcagcc 289
           |||||||| |||  ||| || ||| |||| ||||| ||||| |||||||||| |||  ||
Sbjct: 680 ccgttctcgtacatcgagccatctctggtagtagcatcttcggccatgtcgagctcgacc 621

                                                                       
Query: 290 atcgcagaatcaacaagagccttgagatcctcttctgcggtcttggccctgtcattgtag 349
           |  |||| ||||||||||| ||  ||   || ||| || || ||| |||| |||||||||
Sbjct: 620 aaggcagcatcaacaagagactgcagcctctgttcagctgttttgaccctatcattgtag 561

                                                                       
Query: 350 tcttgaagttgaagaaaacttttgtacagctttgtgacagtcaattgtcgctctgaagaa 409
           || |||||||| || |||  ||||||||| | ||| || | ||| ||||| |||||||| 
Sbjct: 560 tcctgaagttggaggaaatgtttgtacaggtctgtaaccgccaactgtcgttctgaagag 501

                                                                       
Query: 410 actttccgcgcagcagccaattcatcctccagtttctgaaatttcttttgcaaatctgca 469
           |||||||| || ||| ||| ||||||||| |||||||||  |||||| ||||||||||||
Sbjct: 500 actttccgtgcggcaaccagttcatcctctagtttctgagctttcttctgcaaatctgca 441

                                                                       
Query: 470 atgtggtgatctttgcttgtaactttatctttgatctgagaaacctcattttcaaggtct 529
           ||||| || ||||| |  |  | |||||| || |||||   |||||||||||||||||| 
Sbjct: 440 atgtgctgttctttcccagatattttatccttaatctggttaacctcattttcaaggtcc 381

                                                                       
Query: 530 tcatgcatctgaatagccttgtccagctgatgttttgcatcattatgaagctcatcactg 589
           ||  ||||||||||||  || |||| |||||||||| ||||||| |||||  ||||||||
Sbjct: 380 tcgcgcatctgaatagttttatccaactgatgttttccatcattttgaagaccatcactg 321

                                       
Query: 590 gaacttgatatctctctgctctcacgac 617
           ||||||||||  |||||||| |||||||
Sbjct: 320 gaacttgataaatctctgctatcacgac 293
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>gb|AY108636.1| Zea mays PCO138259 mRNA sequence
          Length = 1312

 Score =  170 bits (86), Expect = 3e-39
 Identities = 233/282 (82%)
 Strand = Plus / Minus

                                                                       
Query: 336 ccctgtcattgtagtcttgaagttgaagaaaacttttgtacagctttgtgacagtcaatt 395
           |||| ||||||||||| |||||||| || |||  ||||||||| | ||| || | ||| |
Sbjct: 988 ccctatcattgtagtcctgaagttggaggaaatgtttgtacaggtctgtaaccgccaact 929

                                                                       
Query: 396 gtcgctctgaagaaactttccgcgcagcagccaattcatcctccagtttctgaaatttct 455
           |||| |||||||| |||||||| || ||| ||| ||||||||| |||||||||  |||||
Sbjct: 928 gtcgttctgaagatactttccgtgcggcaaccagttcatcctctagtttctgagctttct 869

                                                                       
Query: 456 tttgcaaatctgcaatgtggtgatctttgcttgtaactttatctttgatctgagaaacct 515
           | ||||||||||||||||| || ||||| |  |  | |||||| || |||||   |||||
Sbjct: 868 tctgcaaatctgcaatgtgctgttctttcccagatattttatccttaatctggttaacct 809

                                                                       
Query: 516 cattttcaaggtcttcatgcatctgaatagccttgtccagctgatgttttgcatcattat 575
           ||||||||||||| ||  ||||||||||||  || |||| |||||||||| ||||||| |
Sbjct: 808 cattttcaaggtcctcgcgcatctgaatagttttatccaactgatgttttccatcatttt 749

                                                     
Query: 576 gaagctcatcactggaacttgatatctctctgctctcacgac 617
           ||||  ||||||||||||||||||  |||||||| |||||||
Sbjct: 748 gaagaccatcactggaacttgataaatctctgctatcacgac 707
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                            
Query: 336     ccctgtcattgtagtcttgaagttgaagaaaacttttgtacagct 380
               ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 6065204 ccctgtcattgtagtcttgaagttgcagaaaacatttgtacagct 6065160



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                               
Query: 391     caattgtcgctctgaagaaactttccgcgcagcagccaattcatcctc 438
               ||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 6065046 caattgtcgttctgaagaaactttccgtgcagcagacaattcatcctc 6064999



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                        
Query: 453     tcttttgcaaatctgcaatgtggtgat-ctttgcttgtaactttatctttgatctga 508
               |||||||||||||||||||||| || | |||||| || |||||||||||||||||||
Sbjct: 6064846 tcttttgcaaatctgcaatgtgttgttcctttgc-tgcaactttatctttgatctga 6064791
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 336   ccctgtcattgtagtcttgaagttgaagaaaacttttgtacagct 380
             ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 30686 ccctgtcattgtagtcttgaagttgcagaaaacatttgtacagct 30642



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 391   caattgtcgctctgaagaaactttccgcgcagcagccaattcatcctc 438
             ||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 30528 caattgtcgttctgaagaaactttccgtgcagcagacaattcatcctc 30481



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                      
Query: 453   tcttttgcaaatctgcaatgtggtgat-ctttgcttgtaactttatctttgatctga 508
             |||||||||||||||||||||| || | |||||| || |||||||||||||||||||
Sbjct: 30328 tcttttgcaaatctgcaatgtgttgttcctttgc-tgcaactttatctttgatctga 30273
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F05
          Length = 147472

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 336   ccctgtcattgtagtcttgaagttgaagaaaacttttgtacagct 380
             ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 86043 ccctgtcattgtagtcttgaagttgcagaaaacatttgtacagct 85999



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 391   caattgtcgctctgaagaaactttccgcgcagcagccaattcatcctc 438
             ||||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct: 85885 caattgtcgttctgaagaaactttccgtgcagcagacaattcatcctc 85838



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                      
Query: 453   tcttttgcaaatctgcaatgtggtgat-ctttgcttgtaactttatctttgatctga 508
             |||||||||||||||||||||| || | |||||| || |||||||||||||||||||
Sbjct: 85685 tcttttgcaaatctgcaatgtgttgttcctttgc-tgcaactttatctttgatctga 85630
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>emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 in linkage group 5,
              complete sequence
          Length = 191302

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Minus

                                            
Query: 78     ggcactaatcaatgtg-cgaaggaacatgg 106
              |||||||||||||||| |||||||||||||
Sbjct: 108720 ggcactaatcaatgtgacgaaggaacatgg 108691
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>gb|AC124454.4| Mus musculus BAC clone RP24-228I9 from chromosome 14, complete sequence
          Length = 155657

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 199    atttcatttttgctttgagattcag 223
              ||||||||| |||||||||||||||
Sbjct: 102554 atttcatttctgctttgagattcag 102578
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>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 444    tctgaaatttcttttgcaaat 464
              |||||||||||||||||||||
Sbjct: 152704 tctgaaatttcttttgcaaat 152684
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>gb|AC015861.7|AC015861 Homo sapiens, clone RP11-45A1, complete sequence
          Length = 151308

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 518   ttttcaaggtcttcatgcatc 538
             |||||||||||||||||||||
Sbjct: 99648 ttttcaaggtcttcatgcatc 99628
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>gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 map 4P16, complete sequence
          Length = 145173

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    taatcaatgtgcgaaggaaca 103
             |||||||||||||||||||||
Sbjct: 39807 taatcaatgtgcgaaggaaca 39827
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>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   agtttctgaaatttcttttg 459
             ||||||||||||||||||||
Sbjct: 92168 agtttctgaaatttcttttg 92149
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>gb|AC147390.4| Pan troglodytes BAC clone RP43-51G14 from 7, complete sequence
          Length = 168525

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    gtgatctttgcttgtaactt 494
              ||||||||||||||||||||
Sbjct: 163765 gtgatctttgcttgtaactt 163784
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>gb|AC149431.1| Populus trichocarpa clone Pop1-124P06, complete sequence
          Length = 85101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   cttgaagttgaagaaaactt 370
             ||||||||||||||||||||
Sbjct: 67417 cttgaagttgaagaaaactt 67398
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>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   gccatgtcgacctcagccat 291
             ||||||||||||||||||||
Sbjct: 44613 gccatgtcgacctcagccat 44632
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>emb|AL589741.11| Human DNA sequence from clone RP11-372M18 on chromosome 1 Contains a
            novel gene and the 5' end of a novel gene, complete
            sequence
          Length = 159331

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  tgatttcatttttgctttga 216
            ||||||||||||||||||||
Sbjct: 9115 tgatttcatttttgctttga 9134
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>emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chromosome 6 Contains a
             ribosomal protein L5 (RPL5) pseudogene, complete sequence
          Length = 162540

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   tttctgaaatttcttttgca 461
             ||||||||||||||||||||
Sbjct: 95055 tttctgaaatttcttttgca 95036
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>emb|AL121961.8|HSJ104A17 Human DNA sequence from clone RP1-104A17 on chromosome 6q12-13 Contains
             the 3' end of the gene for stromal membrane-associated
             protein SMAP1A and the 3' end of the B3GAT2 gene for
             beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase
             S) (GLCATS, KIAA1963), complete sequence
          Length = 84300

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 107   tttcctagacttcacctgcatgag 130
             |||||||||||||||||| |||||
Sbjct: 56724 tttcctagacttcacctgtatgag 56747
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>emb|BX046505.1|CNS0981P Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC20AG05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 539 tgaatagccttgtccagctg 558
           ||||||||||||||||||||
Sbjct: 390 tgaatagccttgtccagctg 409
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>emb|BX017376.1|CNS08LKK Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA26AG11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 872

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 539 tgaatagccttgtccagctg 558
           ||||||||||||||||||||
Sbjct: 376 tgaatagccttgtccagctg 395
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>emb|BX017375.1|CNS08LKJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA26AG11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 944

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 539 tgaatagccttgtccagctg 558
           ||||||||||||||||||||
Sbjct: 685 tgaatagccttgtccagctg 666
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>emb|BX005723.1|CNS08CKV Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA1BD06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 738

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 539 tgaatagccttgtccagctg 558
           ||||||||||||||||||||
Sbjct: 387 tgaatagccttgtccagctg 406
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>gb|AC102803.3| Homo sapiens chromosome 18, clone RP11-454J3, complete sequence
          Length = 212842

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 tccagtttctgaaatttctt 456
           ||||||||||||||||||||
Sbjct: 176 tccagtttctgaaatttctt 157
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>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete
            sequence
          Length = 99345

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  tttcttttgcaaatctgcaa 470
            ||||||||||||||||||||
Sbjct: 4038 tttcttttgcaaatctgcaa 4057
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>gb|AC092810.2| Homo sapiens chromosome 1 clone RP11-385M4, complete sequence
          Length = 173917

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    tgatttcatttttgctttga 216
              ||||||||||||||||||||
Sbjct: 128311 tgatttcatttttgctttga 128330
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>gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-736G13, complete sequence
          Length = 149144

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   tccagtttctgaaatttctt 456
             ||||||||||||||||||||
Sbjct: 96670 tccagtttctgaaatttctt 96651
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     aagttgaagaaaacttttgt 374
               ||||||||||||||||||||
Sbjct: 3499172 aagttgaagaaaacttttgt 3499191
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 440      agtttctgaaatttcttttg 459
                ||||||||||||||||||||
Sbjct: 18512853 agtttctgaaatttcttttg 18512834



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      gccatgtcgacctcagccat 291
                ||||||||||||||||||||
Sbjct: 16304178 gccatgtcgacctcagccat 16304197
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>gb|AC096721.2| Homo sapiens BAC clone RP11-19C24 from 4, complete sequence
          Length = 161824

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttgtagtcttgaagttgaag 363
             ||||||||||||||||||||
Sbjct: 61076 ttgtagtcttgaagttgaag 61057



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttgtagtcttgaagttgaag 363
             ||||||||||||||||||||
Sbjct: 56616 ttgtagtcttgaagttgaag 56597
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>gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complete sequence
          Length = 159952

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 445  ctgaaatttcttttgcaaat 464
            ||||||||||||||||||||
Sbjct: 8422 ctgaaatttcttttgcaaat 8441
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>dbj|AB011405.1| Actinobacillus sp. cdta cdtb cdtc genes for Cytolethal distending
            toxin A, Cytolethal distending toxin B, Cytolethal
            distending toxin C, complete cds
          Length = 3560

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  atttcatttttgctttgaga 218
            ||||||||||||||||||||
Sbjct: 2850 atttcatttttgctttgaga 2869
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>emb|BX284669.12| Zebrafish DNA sequence from clone CH211-280E18 in linkage group 20,
             complete sequence
          Length = 153189

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 505   ctgagaaacctcattttcaaggtc 528
             |||||||| |||||||||||||||
Sbjct: 26855 ctgagaaatctcattttcaaggtc 26878
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>gb|AF006830.1|AF006830 Actinobacillus actinomycetemcomitans cytoplasmic axial filament
            protein (cafA) gene, partial cds; glutaredoxin 2 (glrA),
            virulence plasmid protein (vppA), cytolethal distending
            toxin protein A (cdtA), cytolethal distending toxin
            protein B (cdtB), cytolethal distending toxin protein C
            (cdtC), and plasmid protein genes, complete cds;
            integrase gene, partial cds; and unknown gene
          Length = 8012

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  atttcatttttgctttgaga 218
            ||||||||||||||||||||
Sbjct: 4905 atttcatttttgctttgaga 4924
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 440      agtttctgaaatttcttttg 459
                ||||||||||||||||||||
Sbjct: 18672254 agtttctgaaatttcttttg 18672235



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      gccatgtcgacctcagccat 291
                ||||||||||||||||||||
Sbjct: 16394157 gccatgtcgacctcagccat 16394176
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 355     aagttgaagaaaacttttgt 374
               ||||||||||||||||||||
Sbjct: 3499117 aagttgaagaaaacttttgt 3499136
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>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103647

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   aagttgaagaaaacttttgt 374
             ||||||||||||||||||||
Sbjct: 14100 aagttgaagaaaacttttgt 14119
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>emb|AL713902.2|CNS07YQ2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 116371

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   aagttgaagaaaacttttgt 374
             ||||||||||||||||||||
Sbjct: 32742 aagttgaagaaaacttttgt 32723
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>emb|AL928683.8| Mouse DNA sequence from clone RP23-78O17 on chromosome 2, complete
             sequence
          Length = 142772

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   ctgaaatttcttttgcaaat 464
             ||||||||||||||||||||
Sbjct: 16433 ctgaaatttcttttgcaaat 16452
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>emb|AL591390.8| Mouse DNA sequence from clone RP23-355L10 on chromosome 11, complete
             sequence
          Length = 186134

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   tctactacatggtaagtaat 168
             ||||||||||||||||||||
Sbjct: 24411 tctactacatggtaagtaat 24392
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>dbj|AB017807.1| Actinobacillus actinomycetemcomitans cdtA, cdtB and cdtC genes and 2
            ORFs, complete cds
          Length = 3528

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 199  atttcatttttgctttgaga 218
            ||||||||||||||||||||
Sbjct: 2842 atttcatttttgctttgaga 2861


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,985,292
Number of Sequences: 3902068
Number of extensions: 5985292
Number of successful extensions: 112953
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112661
Number of HSP's gapped (non-prelim): 289
length of query: 617
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 594
effective length of database: 17,143,297,704
effective search space: 10183118836176
effective search space used: 10183118836176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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