ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15h21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY941795.1| Solenopsis invicta vitellogenin-2 mRNA, complete cds 40 2.3
2gb|AY230323.1| Triticum aestivum mutant FCA-D1 (Fca) gene, compl... 38 9.2
3gb|AY235474.1| Triticum aestivum FCA-like protein (Fca-1E8) gene... 38 9.2
4gb|AY235473.1| Triticum aestivum FCA-like protein (Fca-2D11) gen... 38 9.2
5gb|AY235472.1| Triticum aestivum FCA-like protein (Fca-1F4) gene... 38 9.2
6gb|AY235471.1| Triticum aestivum nonfunctional FCA-like protein ... 38 9.2
7gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene... 38 9.2
8gb|AY235449.1| Triticum aestivum FCA-like protein (Fca-3G1) gene... 38 9.2
9emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chro... 38 9.2
10emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chr... 38 9.2
11gb|AC098974.2| Homo sapiens chromosome 3 clone RP11-320M6, compl... 38 9.2
12ref|NM_073802.1| Caenorhabditis elegans ZC455.3 (UDP-glucuronysl... 38 9.2
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
14dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
15dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
16gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, compl... 38 9.2
17gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 38 9.2
18emb|Z75554.1|CEZC455 Caenorhabditis elegans Cosmid ZC455, comple... 38 9.2
19gb|BC085064.1| Xenopus laevis hypothetical LOC495480, mRNA (cDNA... 38 9.2

>gb|AY941795.1| Solenopsis invicta vitellogenin-2 mRNA, complete cds
          Length = 5624

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   ctatggcagtacatgaattt 41
            ||||||||||||||||||||
Sbjct: 2167 ctatggcagtacatgaattt 2186



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>gb|AY230323.1| Triticum aestivum mutant FCA-D1 (Fca) gene, complete cds
          Length = 10360

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 8224 tcctaatatgccaatacca 8206



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>gb|AY235474.1| Triticum aestivum FCA-like protein (Fca-1E8) gene, exons 8 through
            15, partial cds
          Length = 3712

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2497 tcctaatatgccaatacca 2479



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>gb|AY235473.1| Triticum aestivum FCA-like protein (Fca-2D11) gene, exons 8 through
            15, partial cds
          Length = 3648

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2492 tcctaatatgccaatacca 2474



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>gb|AY235472.1| Triticum aestivum FCA-like protein (Fca-1F4) gene, exons 8 through
            15, partial cds
          Length = 3723

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2511 tcctaatatgccaatacca 2493



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>gb|AY235471.1| Triticum aestivum nonfunctional FCA-like protein (Fca-1F1) gene,
            exons 8 through 15, partial sequence
          Length = 3665

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2495 tcctaatatgccaatacca 2477



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>gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene, exons 8 through
            15, partial cds
          Length = 3508

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2338 tcctaatatgccaatacca 2320



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>gb|AY235449.1| Triticum aestivum FCA-like protein (Fca-3G1) gene, exons 8 through
            15, partial cds
          Length = 3711

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   tcctaatatgccaatacca 76
            |||||||||||||||||||
Sbjct: 2539 tcctaatatgccaatacca 2521



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>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete
              sequence
          Length = 210326

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     aaacacagatttcctaata 65
              |||||||||||||||||||
Sbjct: 163519 aaacacagatttcctaata 163537



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>emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chromosome 9 Contains the
             5' end of a malic enzyme pseudogene, complete sequence
          Length = 60532

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    gcaaacacagatttcctaa 63
             |||||||||||||||||||
Sbjct: 37318 gcaaacacagatttcctaa 37300



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>gb|AC098974.2| Homo sapiens chromosome 3 clone RP11-320M6, complete sequence
          Length = 185761

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 8     cctgggaacanagactatggca 29
             |||||||||| |||||||||||
Sbjct: 23246 cctgggaacacagactatggca 23225



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>ref|NM_073802.1| Caenorhabditis elegans ZC455.3 (UDP-glucuronysltransferase) mRNA,
           complete cds
          Length = 1581

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 81  acaccaacaatttcaaaag 99
           |||||||||||||||||||
Sbjct: 775 acaccaacaatttcaaaag 793



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 32      acatgaatttcgtgcaaac 50
               |||||||||||||||||||
Sbjct: 2570280 acatgaatttcgtgcaaac 2570298



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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416D03
          Length = 157112

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     acatgaatttcgtgcaaac 50
              |||||||||||||||||||
Sbjct: 124701 acatgaatttcgtgcaaac 124719



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>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434B04
          Length = 167029

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    acatgaatttcgtgcaaac 50
             |||||||||||||||||||
Sbjct: 20055 acatgaatttcgtgcaaac 20073



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>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence
          Length = 199709

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     aaacacagatttcctaata 65
              |||||||||||||||||||
Sbjct: 199296 aaacacagatttcctaata 199314



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 20      gactatggcagtacatgaa 38
               |||||||||||||||||||
Sbjct: 3781949 gactatggcagtacatgaa 3781931



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>emb|Z75554.1|CEZC455 Caenorhabditis elegans Cosmid ZC455, complete sequence
          Length = 28228

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    acaccaacaatttcaaaag 99
             |||||||||||||||||||
Sbjct: 20418 acaccaacaatttcaaaag 20400



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>gb|BC085064.1| Xenopus laevis hypothetical LOC495480, mRNA (cDNA clone MGC:98911
           IMAGE:4173482), complete cds
          Length = 3018

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  caccaacaatttcaaaaga 100
           |||||||||||||||||||
Sbjct: 565 caccaacaatttcaaaaga 583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,289,463
Number of Sequences: 3902068
Number of extensions: 1289463
Number of successful extensions: 79714
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79653
Number of HSP's gapped (non-prelim): 61
length of query: 187
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 165
effective length of database: 17,147,199,772
effective search space: 2829287962380
effective search space used: 2829287962380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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