| Clone Name | rbags15h21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY941795.1| Solenopsis invicta vitellogenin-2 mRNA, complete cds Length = 5624 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ctatggcagtacatgaattt 41 |||||||||||||||||||| Sbjct: 2167 ctatggcagtacatgaattt 2186
>gb|AY230323.1| Triticum aestivum mutant FCA-D1 (Fca) gene, complete cds Length = 10360 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 8224 tcctaatatgccaatacca 8206
>gb|AY235474.1| Triticum aestivum FCA-like protein (Fca-1E8) gene, exons 8 through 15, partial cds Length = 3712 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2497 tcctaatatgccaatacca 2479
>gb|AY235473.1| Triticum aestivum FCA-like protein (Fca-2D11) gene, exons 8 through 15, partial cds Length = 3648 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2492 tcctaatatgccaatacca 2474
>gb|AY235472.1| Triticum aestivum FCA-like protein (Fca-1F4) gene, exons 8 through 15, partial cds Length = 3723 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2511 tcctaatatgccaatacca 2493
>gb|AY235471.1| Triticum aestivum nonfunctional FCA-like protein (Fca-1F1) gene, exons 8 through 15, partial sequence Length = 3665 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2495 tcctaatatgccaatacca 2477
>gb|AY235467.1| Triticum aestivum FCA-like protein (Fca-1C5) gene, exons 8 through 15, partial cds Length = 3508 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2338 tcctaatatgccaatacca 2320
>gb|AY235449.1| Triticum aestivum FCA-like protein (Fca-3G1) gene, exons 8 through 15, partial cds Length = 3711 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 tcctaatatgccaatacca 76 ||||||||||||||||||| Sbjct: 2539 tcctaatatgccaatacca 2521
>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete sequence Length = 210326 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 aaacacagatttcctaata 65 ||||||||||||||||||| Sbjct: 163519 aaacacagatttcctaata 163537
>emb|AL590672.14| Human DNA sequence from clone CTD-2609B1 on chromosome 9 Contains the 5' end of a malic enzyme pseudogene, complete sequence Length = 60532 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 gcaaacacagatttcctaa 63 ||||||||||||||||||| Sbjct: 37318 gcaaacacagatttcctaa 37300
>gb|AC098974.2| Homo sapiens chromosome 3 clone RP11-320M6, complete sequence Length = 185761 Score = 38.2 bits (19), Expect = 9.2 Identities = 21/22 (95%) Strand = Plus / Minus Query: 8 cctgggaacanagactatggca 29 |||||||||| ||||||||||| Sbjct: 23246 cctgggaacacagactatggca 23225
>ref|NM_073802.1| Caenorhabditis elegans ZC455.3 (UDP-glucuronysltransferase) mRNA, complete cds Length = 1581 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 acaccaacaatttcaaaag 99 ||||||||||||||||||| Sbjct: 775 acaccaacaatttcaaaag 793
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 acatgaatttcgtgcaaac 50 ||||||||||||||||||| Sbjct: 2570280 acatgaatttcgtgcaaac 2570298
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 acatgaatttcgtgcaaac 50 ||||||||||||||||||| Sbjct: 124701 acatgaatttcgtgcaaac 124719
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 acatgaatttcgtgcaaac 50 ||||||||||||||||||| Sbjct: 20055 acatgaatttcgtgcaaac 20073
>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence Length = 199709 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 aaacacagatttcctaata 65 ||||||||||||||||||| Sbjct: 199296 aaacacagatttcctaata 199314
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gactatggcagtacatgaa 38 ||||||||||||||||||| Sbjct: 3781949 gactatggcagtacatgaa 3781931
>emb|Z75554.1|CEZC455 Caenorhabditis elegans Cosmid ZC455, complete sequence Length = 28228 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 acaccaacaatttcaaaag 99 ||||||||||||||||||| Sbjct: 20418 acaccaacaatttcaaaag 20400
>gb|BC085064.1| Xenopus laevis hypothetical LOC495480, mRNA (cDNA clone MGC:98911 IMAGE:4173482), complete cds Length = 3018 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 caccaacaatttcaaaaga 100 ||||||||||||||||||| Sbjct: 565 caccaacaatttcaaaaga 583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,289,463 Number of Sequences: 3902068 Number of extensions: 1289463 Number of successful extensions: 79714 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79653 Number of HSP's gapped (non-prelim): 61 length of query: 187 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 165 effective length of database: 17,147,199,772 effective search space: 2829287962380 effective search space used: 2829287962380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)