ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119438.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-B04, full insert sequence Length = 2579 Score = 137 bits (69), Expect = 3e-29 Identities = 141/165 (85%) Strand = Plus / Minus Query: 244 tggtttctctgaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaa 303 |||||| |||||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 644 tggtttttctgaagtgtcctttcttttcagaggcactgatgtgctaacaactggcttgaa 585 Query: 304 aaatgactcaagccttccttgggatgatttattctttgccgatttaatcttctctatggc 363 || || || |||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 584 gaaggattcgagccttccttgggaagatttgttcttggcaaatttaatcttctctatggc 525 Query: 364 cttagtcacacgatcttgactgaagccgttttctttcaccagaaa 408 ||| ||||| | |||||| |||| || ||||||||||||||||| Sbjct: 524 ctttgtcactctatcttggttgaaaccattttctttcaccagaaa 480
>dbj|AK060623.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-F07, full insert sequence Length = 1406 Score = 137 bits (69), Expect = 3e-29 Identities = 141/165 (85%) Strand = Plus / Minus Query: 244 tggtttctctgaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaa 303 |||||| |||||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 1203 tggtttttctgaagtgtcctttcttttcagaggcactgatgtgctaacaactggcttgaa 1144 Query: 304 aaatgactcaagccttccttgggatgatttattctttgccgatttaatcttctctatggc 363 || || || |||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 1143 gaaggattcgagccttccttgggaagatttgttcttggcaaatttaatcttctctatggc 1084 Query: 364 cttagtcacacgatcttgactgaagccgttttctttcaccagaaa 408 ||| ||||| | |||||| |||| || ||||||||||||||||| Sbjct: 1083 ctttgtcactctatcttggttgaaaccattttctttcaccagaaa 1039
>dbj|AB021666.2| Oryza sativa (japonica cultivar-group) OsFEN-1a mRNA for FEN-1, complete cds Length = 1354 Score = 137 bits (69), Expect = 3e-29 Identities = 141/165 (85%) Strand = Plus / Minus Query: 244 tggtttctctgaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaa 303 |||||| |||||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 1155 tggtttttctgaagtgtcctttcttttcagaggcactgatgtgctaacaactggcttgaa 1096 Query: 304 aaatgactcaagccttccttgggatgatttattctttgccgatttaatcttctctatggc 363 || || || |||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 1095 gaaggattcgagccttccttgggaagatttgttcttggcaaatttaatcttctctatggc 1036 Query: 364 cttagtcacacgatcttgactgaagccgttttctttcaccagaaa 408 ||| ||||| | |||||| |||| || ||||||||||||||||| Sbjct: 1035 ctttgtcactctatcttggttgaaaccattttctttcaccagaaa 991
>dbj|AK103819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147G19, full insert sequence Length = 1481 Score = 129 bits (65), Expect = 8e-27 Identities = 141/165 (85%), Gaps = 1/165 (0%) Strand = Plus / Minus Query: 244 tggtttctctgaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaa 303 |||||| |||||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 1165 tggtttttctgaagtgtcctttcttttcagaggcactgatgtgctaacaactggcttgaa 1106 Query: 304 aaatgactcaagccttccttgggatgatttattctttgccgatttaatcttctctatggc 363 || || || |||||||||||||| ||||| ||| |||| ||||||||||||||||||| Sbjct: 1105 gaaggattcgagccttccttgggaagatttgttc-ttgcaaatttaatcttctctatggc 1047 Query: 364 cttagtcacacgatcttgactgaagccgttttctttcaccagaaa 408 ||| ||||| | |||||| |||| || ||||||||||||||||| Sbjct: 1046 ctttgtcactctatcttggttgaaaccattttctttcaccagaaa 1002
>ref|XM_475800.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1143 Score = 103 bits (52), Expect = 5e-19 Identities = 103/120 (85%) Strand = Plus / Minus Query: 244 tggtttctctgaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaa 303 |||||| |||||||| ||||| | ||||| |||||||||||||||||| ||||||||| Sbjct: 1089 tggtttttctgaagtgtcctttcttttcagaggcactgatgtgctaacaactggcttgaa 1030 Query: 304 aaatgactcaagccttccttgggatgatttattctttgccgatttaatcttctctatggc 363 || || || |||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct: 1029 gaaggattcgagccttccttgggaagatttgttcttggcaaatttaatcttctctatggc 970
>gb|AY104316.1| Zea mays PCO066214 mRNA sequence Length = 1552 Score = 101 bits (51), Expect = 2e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 254 gaagtttccttccgcttcagtggcactgatgtgctaacagttggcttgaaaaatgactca 313 ||||| |||||||| || || || |||||||| | |||||||||||||||| ||||| Sbjct: 1168 gaagtctccttccgttttagcggtgctgatgtggtggcagttggcttgaaaaaggactcg 1109 Query: 314 agccttccttgggatgatttattctttgccgatttaatcttctctatggccttagtcaca 373 || |||||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 1108 agtcttccttgcgacgatttattcttggcagatttgatcttctctatggcctttgtcacc 1049 Query: 374 cgatctt 380 ||||||| Sbjct: 1048 cgatctt 1042
>ref|NM_180546.2| Arabidopsis thaliana 5'-3' exonuclease/ DNA binding / nuclease AT5G26680 mRNA, complete cds Length = 1379 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 295 tggcttgaaaaatgactcaagccttccttgggatgatttattctttgccgatttaatctt 354 |||||||||||||||||| ||||| || || |||||||||||||| || | |||||| || Sbjct: 1061 tggcttgaaaaatgactccagcctgccctgcgatgatttattcttcgcagttttaatttt 1002 Query: 355 ctctatggcctt 366 |||||| ||||| Sbjct: 1001 ctctatcgcctt 990
>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11, complete sequence Length = 115808 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 316 ccttccttgggatgatttattctttgccgatttaatcttctctatggcct 365 |||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 5368 ccttccttgggaagatttgttcttggcaaatttaatcttctctatggcct 5417 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Plus Query: 269 ttcagtggcactgatgtgctaacagttggcttgaa 303 ||||| |||||||||||||||||| ||||||||| Sbjct: 5217 ttcagaggcactgatgtgctaacaactggcttgaa 5251
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 316 ccttccttgggatgatttattctttgccgatttaatcttctctatggcct 365 |||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 137846 ccttccttgggaagatttgttcttggcaaatttaatcttctctatggcct 137895 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Plus Query: 269 ttcagtggcactgatgtgctaacagttggcttgaa 303 ||||| |||||||||||||||||| ||||||||| Sbjct: 137695 ttcagaggcactgatgtgctaacaactggcttgaa 137729
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 316 ccttccttgggatgatttattctttgccgatttaatcttctctatggcct 365 |||||||||||| ||||| ||||| || ||||||||||||||||||||| Sbjct: 26624371 ccttccttgggaagatttgttcttggcaaatttaatcttctctatggcct 26624420 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Plus Query: 269 ttcagtggcactgatgtgctaacagttggcttgaa 303 ||||| |||||||||||||||||| ||||||||| Sbjct: 26624220 ttcagaggcactgatgtgctaacaactggcttgaa 26624254
>dbj|AP005139.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-93H10, complete sequences Length = 165500 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 151 aactgaggatgccactgcagcttttg 176 ||||||||||||||||||||| |||| Sbjct: 103950 aactgaggatgccactgcagcatttg 103925
>gb|AC155728.13| Mus musculus 6 BAC RP24-162H1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176377 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 aacaccgaacaaagtttttag 125 ||||||||||||||||||||| Sbjct: 125239 aacaccgaacaaagtttttag 125219
>emb|CR354750.1| Mus musculus chromosome 6, clone tr151 strain 129/Sv, complete sequence Length = 167508 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 aacaccgaacaaagtttttag 125 ||||||||||||||||||||| Sbjct: 112269 aacaccgaacaaagtttttag 112249
>gb|AF044331.1|AF044331 Oncorhynchus sp. ribonuclease P RNA gene, partial sequence Length = 308 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 agctgcactggctggtttctc 252 ||||||||||||||||||||| Sbjct: 185 agctgcactggctggtttctc 165
>gb|U50384.1|MMU50384 Mus musculus retinoic acid-responsive (NN8-4AG) gene, partial cds Length = 1131 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 aacaccgaacaaagtttttag 125 ||||||||||||||||||||| Sbjct: 268 aacaccgaacaaagtttttag 248
>gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, complete sequence Length = 188948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ctttgccgatttaatcttct 356 |||||||||||||||||||| Sbjct: 25734 ctttgccgatttaatcttct 25715
>gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete sequence Length = 110472 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 caagtcactaatttacctaa 80 |||||||||||||||||||| Sbjct: 35217 caagtcactaatttacctaa 35236
>gb|DQ124087.1| Coffea arabica clone MN-SSH3-D11 mRNA sequence Length = 325 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tgaagccgttttctttcacc 403 |||||||||||||||||||| Sbjct: 284 tgaagccgttttctttcacc 265
>gb|AF058914.1|F21E10 Arabidopsis thaliana BAC F21E10, complete sequence Length = 111767 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 tggcttgaaaaatgactcaagcct 318 |||||||||||||||||| ||||| Sbjct: 85879 tggcttgaaaaatgactccagcct 85856 Score = 40.1 bits (20), Expect = 5.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 326 gatgatttattctttgccgatttaatcttctctatggcct 365 |||||||||||||| || | |||||| |||||||| |||| Sbjct: 85767 gatgatttattcttcgcagttttaattttctctatcgcct 85728
>gb|AC102009.20| Mus musculus chromosome 10, clone RP24-512D20, complete sequence Length = 172721 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ctttgccgatttaatcttct 356 |||||||||||||||||||| Sbjct: 83445 ctttgccgatttaatcttct 83426
>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence Length = 235030 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 atttaatcttctctatggccttag 368 |||||||| ||||||||||||||| Sbjct: 95749 atttaatcctctctatggccttag 95772
>emb|AL669966.10| Mouse DNA sequence from clone RP23-174K9 on chromosome 4, complete sequence Length = 199890 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tggcttgaaaaatgactcaa 314 |||||||||||||||||||| Sbjct: 18991 tggcttgaaaaatgactcaa 19010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,803,320 Number of Sequences: 3902068 Number of extensions: 3803320 Number of successful extensions: 67285 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67223 Number of HSP's gapped (non-prelim): 61 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
