>YCF23_PORPU (P51373) Hypothetical 29.1 kDa protein ycf23 (ORF265)|
          Length = 265

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 42/139 (30%), Positives = 78/139 (56%)
 Frame = -3

Query: 647 ETRKILPGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEK 468
           ETR +LP  TL VT+PH L + +Q++LA  L+  G D+IQTEG  +S      + G+I+K
Sbjct: 113 ETRNLLPHATLCVTLPHILKIEEQVKLASDLQRIGIDMIQTEGKSTSISKTDHLSGMIQK 172

Query: 467 ATPTLAAAYSISRAVSIPVMCASGLSSXXXXXXXXXXXXXXXXXXAINKLNDVVAMIAEV 288
           +  T ++ Y++S  + +P++ ASG+SS                   I +L D+ +M+  +
Sbjct: 173 SASTFSSTYTVSSKIRLPIISASGISSLTSPIAFLYGASGIGIGSNIRRLQDIGSMVIYI 232

Query: 287 RSIAEALGTTASRNVSEDL 231
             +  A+  +++ N+ +++
Sbjct: 233 YEVQAAI--SSNHNIQQNI 249

>YCF23_CYAPA (P31605) Hypothetical 26.6 kDa protein ycf23|
          Length = 243

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 48/124 (38%), Positives = 65/124 (52%)
 Frame = -3

Query: 647 ETRKILPGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEK 468
           +TR +LP   LSVT+P+ L L  Q+ LA  LE+   D+IQTE GK +  T       IE 
Sbjct: 112 QTRSLLPDTPLSVTIPYLLPLNLQLELAYRLEDLNVDLIQTE-GKINKITSLLDNRNIET 170

Query: 467 ATPTLAAAYSISRAVSIPVMCASGLSSXXXXXXXXXXXXXXXXXXAINKLNDVVAMIAEV 288
             PTLA+ Y I+  V+IPV+CASGL+                   A++KLN    MI  +
Sbjct: 171 ILPTLASTYLIANNVTIPVICASGLTISTIELPFKLNASGIGIGNAVSKLNSTEEMINLL 230

Query: 287 RSIA 276
             I+
Sbjct: 231 NEIS 234

>YCF23_CYACA (O19904) Hypothetical 27.4 kDa protein ycf23|
          Length = 249

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 32/86 (37%), Positives = 49/86 (56%)
 Frame = -3

Query: 647 ETRKILPGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEK 468
           E +K+ P + L+VT+P+ L+  DQ+ L + LE    D IQTEG   S      V  L+  
Sbjct: 113 EIKKLCPRVPLTVTIPYILNQKDQINLCKQLESLRVDYIQTEGNSISKCKNHCVQDLLRL 172

Query: 467 ATPTLAAAYSISRAVSIPVMCASGLS 390
           +  TLA  Y + +   +P++C+SGLS
Sbjct: 173 SLQTLACTYELVKHTQLPIICSSGLS 198

>YCF23_ANTSP (P46314) Hypothetical 30.3 kDa protein ycf23 (ORF 277)|
          Length = 277

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
 Frame = -3

Query: 647 ETRKILPGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGG---------KSSSPTK 495
           + + +LP   + VT+PH L L +Q+ LA+ LE  G +++QTEG            +    
Sbjct: 114 QVKYLLPYTDICVTIPHILKLHEQIYLAQKLESLGINLLQTEGSITNFSNEKLLEAKKIN 173

Query: 494 PGVLGLIEKATPTLAAAYSISRAVSIPVMCASGLSSXXXXXXXXXXXXXXXXXXAINKLN 315
             +L     A   L++ YSIS+ VS+PV+ +SG++                   +++KL 
Sbjct: 174 DNILYSTSMACCALSSVYSISKVVSLPVIASSGINGISASVALSYGASGIGIRSSVSKLG 233

Query: 314 DVVAM 300
           +++ M
Sbjct: 234 NIIDM 238

>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516|
          Length = 1157

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -3

Query: 629  PGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEKATPTLA 450
            P +    T P+  S PD ++     + +G   ++ EGG    P +P V    E  T    
Sbjct: 949  PAVGTGFTPPNKHSAPDSLKAKFSPQPQGQPPLKGEGGSPLPPREPSVKAAQELRTLATC 1008

Query: 449  AAYSISRA 426
            AA S   A
Sbjct: 1009 AAGSRGEA 1016

>STAP1_HUMAN (Q9ULZ2) Signal-transducing adaptor protein 1 (STAP-1) (Stem cell|
           adaptor protein 1) (BCR downstream signaling protein 1)
           (Docking protein BRDG1)
          Length = 295

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = -3

Query: 626 GITLSVT---VPHTLSL-PDQM-RLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEKAT 462
           G  L+VT   VP  +SL P Q+ +L E+LE E    I+TE   S    K      ++   
Sbjct: 114 GFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRRIETEQSTSVEKEKEPTEDYVDVLN 173

Query: 461 PTLAAAYSISR 429
           P  A  Y++SR
Sbjct: 174 PMPACFYTVSR 184

>PYRD_BACHD (Q9K9W1) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 305

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
 Frame = -3

Query: 644 TRKILPGITLSVTVPHTLSLPDQMRLAELLEEEGADIIQTEGGKSSSPTKPGVLGLIEKA 465
           T+++    T+ V V  + ++ D + +A+ +E  GAD      G S   T  G+   +++ 
Sbjct: 151 TQEVKRVSTVPVYVKLSPNVSDIVEMAQAVERAGAD------GLSMINTLLGMRLDLKRR 204

Query: 464 TPTLAAA-----------------YSISRAVSIPVMCASGLSS 387
           TP LA                   Y +S+AVSIP++   G+ S
Sbjct: 205 TPILANGTGGLSGPAIKPVAIRMIYQVSQAVSIPIIGMGGIQS 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,382,858
Number of Sequences: 219361
Number of extensions: 1621646
Number of successful extensions: 4402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4400
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)