>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)|
          Length = 1428

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 607 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEXKGTKKFWICNSS 431
           C G+ EC S +SS  + C          E  E  K +    PHC +  G     ICN+S
Sbjct: 253 CSGRGECKSSNSSSAVEC----------ECSENWKGESCDIPHCTDNCGFPHRGICNAS 301

>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)|
          Length = 1432

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = -3

Query: 607 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEXKGTKKFWICNSS 431
           C G+ EC S +SS  + C          E  E  K +    PHC +  G     ICN+S
Sbjct: 257 CSGRGECKSSNSSSTVEC----------ECSENWKGESCDIPHCTDNCGFPHRGICNAS 305

>GAS1_MOUSE (Q01721) Growth-arrest-specific protein 1 precursor (GAS-1)|
          Length = 343

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
 Frame = -3

Query: 610 QCIGKTECSSCHSSYGILCRACLKVRYGEEM--------EEVRKNKKWMCP-HCV 473
           QC G+ +CS  +S Y   C   L  R G +              + +W CP HC+
Sbjct: 53  QCQGEPDCSYAYSQYAEACAPVLAQRGGADAPGPAGAFPASAASSPRWRCPSHCI 107

>BCHG_CHLAU (P33326) Bacteriochlorophyll synthase 34 kDa chain|
          Length = 310

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 356 RCISLLTRLEYGDPGWCYLPLLQADGAVAYPEFLGTLLLNAVRAHPLL 499
           R I L+  + +  P W ++    A GA+ + E +G LLL    A P+L
Sbjct: 31  RSIQLMKPVTWFAPTWAFMCGAIASGALGWNESIGRLLLGMFMAGPIL 78

>I10R1_HUMAN (Q13651) Interleukin-10 receptor alpha chain precursor (IL-10R-A)|
           (IL-10R1) (CDw210a antigen)
          Length = 578

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 131 LASVFSESHSGNIWEKVLVP-PHSSATDSTKQKIQSSHQSSLKITEEVSKQGTPGSRTLL 307
           + SV  E H+G I  K+ +P P  +  + T + I S  +       E++ +  PG+ T  
Sbjct: 127 VGSVNLEIHNGFILGKIQLPRPKMAPANDTYESIFSHFREY-----EIAIRKVPGNFTF- 180

Query: 308 SE*SAALQLVHEKVSHRCISLLTRLEYGD 394
                     H+KV H   SLLT  E G+
Sbjct: 181 ---------THKKVKHENFSLLTSGEVGE 200

>UBP3_MOUSE (Q91W36) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 3)
           (Ubiquitin-specific-processing protease 3)
           (Deubiquitinating enzyme 3)
          Length = 520

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 553 RACLKVRYGEEMEEVRKNKKWMCPHCVEX-KGTKKFWI--CNSSICLKKRK 410
           R CL  R   ++EE+ + + +MC  C +  K TKKFWI     ++CL  ++
Sbjct: 365 RDCL--RSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKR 413

>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)|
          Length = 1429

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -3

Query: 607 CIGKTECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVEXKGTKKFWICNSS 431
           C G+ EC   +SS  + C          E  E  K +    PHC +  G     ICNSS
Sbjct: 254 CSGRGECKISNSSDTVEC----------ECSENWKGEACDIPHCTDNCGFPHRGICNSS 302

>UBP3_HUMAN (Q9Y6I4) Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 3)
           (Ubiquitin-specific-processing protease 3)
           (Deubiquitinating enzyme 3)
          Length = 521

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 553 RACLKVRYGEEMEEVRKNKKWMCPHCVEX-KGTKKFWI 443
           R CL  R   ++EE+ + + +MC  C +  K TKKFWI
Sbjct: 366 RDCL--RSFTDLEELDETELYMCHKCKKKQKSTKKFWI 401

>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)|
          Length = 3969

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
 Frame = -3

Query: 592  ECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVE---------XKGTKKFWIC 440
            EC+ C +SY      CL   Y    +  +K K W+C  CV           KG    W  
Sbjct: 1497 ECNKCRNSYH---PECLGPNY--PTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSH 1551

Query: 439  NSSICLKKRKIAPTG 395
            + S+C    K+   G
Sbjct: 1552 DFSLCHDCAKLFAKG 1566

>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
 Frame = -3

Query: 592  ECSSCHSSYGILCRACLKVRYGEEMEEVRKNKKWMCPHCVE---------XKGTKKFWIC 440
            EC+ C +SY      CL   Y    +  +K K W+C  CV           KG    W  
Sbjct: 1396 ECNKCRNSYH---PECLGPNY--PTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSH 1450

Query: 439  NSSICLKKRKIAPTG 395
            + S+C    K+   G
Sbjct: 1451 DFSLCHDCAKLFAKG 1465

>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1217

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
 Frame = +1

Query: 22  TAQVHTTDVLQAMNASNREHTWISSKLIRYI*ETRNPCFSLQ-RKSLWEHLGEGFGTSTF 198
           T  +   D+L+A  AS  + +W+   +I  I     P   L+  +     L + +     
Sbjct: 204 TRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRPMVQLEGGRFATSDLNDLYRRVIN 263

Query: 199 FSNRFNKTKDPEQPSIIPKNH*RSEQAG------NSRQSYVVVRMIRGSSAGP*EGEPPM 360
            +NR  +  D   PSII +N  R  Q        N R+   V         GP  G  P+
Sbjct: 264 RNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGRRGRPV--------TGP--GNRPL 313

Query: 361 HILAHAL 381
             L+H L
Sbjct: 314 KSLSHML 320

>NU1M_RHISA (O99824) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 313

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 378 AWNMAIPVGAIFLFFKQMELLHIQNFL 458
           AW M +P   IFLF      L+I NF+
Sbjct: 281 AWKMILPQSIIFLFLSYFIFLNINNFI 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,854,732
Number of Sequences: 219361
Number of extensions: 1905551
Number of successful extensions: 5713
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5710
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)