| Clone Name | rbags15g20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 149 bits (75), Expect = 2e-32 Identities = 186/223 (83%) Strand = Plus / Minus Query: 289 gccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaa 348 ||||||||||||||| || ||||| || ||||||| |||||| || ||||| ||||| Sbjct: 568 gccgatgcagaaatcttcaatgatctcaaagactctgaagccatgttgagggccaaaaaa 509 Query: 349 tccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgttcctc 408 ||| ||||||||||| | |||||||||||||| |||||||| || |||||||||||||| Sbjct: 508 tccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatgttcctc 449 Query: 409 cacgtatggagttacatcataaaccttgtccttgattatgatccaacaatccttccttgt 468 ||| || | || ||||| |||||||| |||||||| |||| ||| |||||| ||||||| Sbjct: 448 cacataagaggtgacatcgtaaaccttatccttgatgatgacccagcaatccgtccttgt 389 Query: 469 gttgtgagttgacacctctttctttgtatagctcgtagatgtc 511 |||||| | ||| | ||||| |||||||||||| || ||||| Sbjct: 388 gttgtgtgctgagatctcttcttttgtatagctcctaaatgtc 346
>ref|XM_507217.1| PREDICTED Oryza sativa (japonica cultivar-group), P0434E03.7 mRNA Length = 870 Score = 149 bits (75), Expect = 2e-32 Identities = 186/223 (83%) Strand = Plus / Minus Query: 289 gccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaa 348 ||||||||||||||| || ||||| || ||||||| |||||| || ||||| ||||| Sbjct: 509 gccgatgcagaaatcttcaatgatctcaaagactctgaagccatgttgagggccaaaaaa 450 Query: 349 tccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgttcctc 408 ||| ||||||||||| | |||||||||||||| |||||||| || |||||||||||||| Sbjct: 449 tccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatgttcctc 390 Query: 409 cacgtatggagttacatcataaaccttgtccttgattatgatccaacaatccttccttgt 468 ||| || | || ||||| |||||||| |||||||| |||| ||| |||||| ||||||| Sbjct: 389 cacataagaggtgacatcgtaaaccttatccttgatgatgacccagcaatccgtccttgt 330 Query: 469 gttgtgagttgacacctctttctttgtatagctcgtagatgtc 511 |||||| | ||| | ||||| |||||||||||| || ||||| Sbjct: 329 gttgtgtgctgagatctcttcttttgtatagctcctaaatgtc 287
>dbj|AK070379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054P20, full insert sequence Length = 870 Score = 149 bits (75), Expect = 2e-32 Identities = 186/223 (83%) Strand = Plus / Minus Query: 289 gccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaa 348 ||||||||||||||| || ||||| || ||||||| |||||| || ||||| ||||| Sbjct: 509 gccgatgcagaaatcttcaatgatctcaaagactctgaagccatgttgagggccaaaaaa 450 Query: 349 tccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgttcctc 408 ||| ||||||||||| | |||||||||||||| |||||||| || |||||||||||||| Sbjct: 449 tccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatgttcctc 390 Query: 409 cacgtatggagttacatcataaaccttgtccttgattatgatccaacaatccttccttgt 468 ||| || | || ||||| |||||||| |||||||| |||| ||| |||||| ||||||| Sbjct: 389 cacataagaggtgacatcgtaaaccttatccttgatgatgacccagcaatccgtccttgt 330 Query: 469 gttgtgagttgacacctctttctttgtatagctcgtagatgtc 511 |||||| | ||| | ||||| |||||||||||| || ||||| Sbjct: 329 gttgtgtgctgagatctcttcttttgtatagctcctaaatgtc 287
>dbj|AK059323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H10, full insert sequence Length = 842 Score = 141 bits (71), Expect = 4e-30 Identities = 185/223 (82%) Strand = Plus / Minus Query: 289 gccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaa 348 ||||||||||||||| || ||||| || ||||||| |||||| || ||||| ||||| Sbjct: 568 gccgatgcagaaatcttcaatgatctcaaagactctgaagccatgttgagggccaaaaaa 509 Query: 349 tccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgttcctc 408 ||| ||||||||||| | |||||||||||||| |||||||| || ||||||| |||||| Sbjct: 508 tccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatattcctc 449 Query: 409 cacgtatggagttacatcataaaccttgtccttgattatgatccaacaatccttccttgt 468 ||| || | || ||||| |||||||| |||||||| |||| ||| |||||| ||||||| Sbjct: 448 cacataagaggtgacatcgtaaaccttatccttgatgatgacccagcaatccgtccttgt 389 Query: 469 gttgtgagttgacacctctttctttgtatagctcgtagatgtc 511 |||||| | ||| | ||||| |||||||||||| || ||||| Sbjct: 388 gttgtgtgctgagatctcttcttttgtatagctcctaaatgtc 346
>gb|AY110378.1| Zea mays CL14316_2 mRNA sequence Length = 844 Score = 125 bits (63), Expect = 2e-25 Identities = 148/180 (82%) Strand = Plus / Plus Query: 290 ccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaat 349 ||||||||||||||||||||||| |||||||| | ||||||||||| || || Sbjct: 403 ccgatgcagaaatcctcgatgatatcgaagaccctagtgccatgctgtggcccnnnnnng 462 Query: 350 ccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgttcctcc 409 ||||| || ||||| |||||| |||||||||||||| || |||||||||||||| Sbjct: 463 ccctccgtggaatcannnnnagcattatttagaatggcatctccgcctggatgttcctct 522 Query: 410 acgtatggagttacatcataaaccttgtccttgattatgatccaacaatccttccttgtg 469 || || ||||| |||||||| |||||||||||||| ||||||||||| |||| ||||||| Sbjct: 523 acataaggagtgacatcatagaccttgtccttgataatgatccaacagtcctcccttgtg 582
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Plus Query: 430 aaccttgtccttgattatgatccaacaatccttccttgtgttgtgagttgacacctcttt 489 |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 10079839 aaccttgtccttgactatgatccaacaatccttccttgtgttgtgagtcgatacctcttt 10079898 Query: 490 ctttgtatagctc 502 ||||||||||||| Sbjct: 10079899 ctttgtatagctc 10079911 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 344 aaaaatccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgt 403 |||||||||||||| ||||| | || |||||||||||||| ||||||||||||||||| Sbjct: 10079634 aaaaatccctctgttgaatcaccaccggcattgtttagaatttcatcaccacctggatgt 10079693 Query: 404 tcctccac 411 |||||||| Sbjct: 10079694 tcctccac 10079701 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 268 tcatcatcagtcttccaatttgccgatgcagaaatcctcgatgatgtcgaagactc 323 |||||||||||| | || |||||||||||||||||| |||||||| |||||||||| Sbjct: 10078838 tcatcatcagtccttcagtttgccgatgcagaaatcttcgatgatctcgaagactc 10078893
>dbj|AP005128.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0466E03 Length = 138343 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Plus Query: 430 aaccttgtccttgattatgatccaacaatccttccttgtgttgtgagttgacacctcttt 489 |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 109143 aaccttgtccttgactatgatccaacaatccttccttgtgttgtgagtcgatacctcttt 109202 Query: 490 ctttgtatagctc 502 ||||||||||||| Sbjct: 109203 ctttgtatagctc 109215 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 344 aaaaatccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgt 403 |||||||||||||| ||||| | || |||||||||||||| ||||||||||||||||| Sbjct: 108938 aaaaatccctctgttgaatcaccaccggcattgtttagaatttcatcaccacctggatgt 108997 Query: 404 tcctccac 411 |||||||| Sbjct: 108998 tcctccac 109005 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 268 tcatcatcagtcttccaatttgccgatgcagaaatcctcgatgatgtcgaagactc 323 |||||||||||| | || |||||||||||||||||| |||||||| |||||||||| Sbjct: 108142 tcatcatcagtccttcagtttgccgatgcagaaatcttcgatgatctcgaagactc 108197
>dbj|AP005566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1253_E02 Length = 166645 Score = 121 bits (61), Expect = 3e-24 Identities = 70/73 (95%) Strand = Plus / Plus Query: 430 aaccttgtccttgattatgatccaacaatccttccttgtgttgtgagttgacacctcttt 489 |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 39517 aaccttgtccttgactatgatccaacaatccttccttgtgttgtgagtcgatacctcttt 39576 Query: 490 ctttgtatagctc 502 ||||||||||||| Sbjct: 39577 ctttgtatagctc 39589 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 344 aaaaatccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgt 403 |||||||||||||| ||||| | || |||||||||||||| ||||||||||||||||| Sbjct: 39312 aaaaatccctctgttgaatcaccaccggcattgtttagaatttcatcaccacctggatgt 39371 Query: 404 tcctccac 411 |||||||| Sbjct: 39372 tcctccac 39379 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 268 tcatcatcagtcttccaatttgccgatgcagaaatcctcgatgatgtcgaagactc 323 |||||||||||| | || |||||||||||||||||| |||||||| |||||||||| Sbjct: 38516 tcatcatcagtccttcagtttgccgatgcagaaatcttcgatgatctcgaagactc 38571
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 344 aaaaatccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgt 403 |||||||| ||||||||||| | |||||||||||||| |||||||| || ||||||||| Sbjct: 18215641 aaaaatccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatgt 18215700 Query: 404 tcctccac 411 |||||||| Sbjct: 18215701 tcctccac 18215708 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Plus Query: 430 aaccttgtccttgattatgatccaacaatccttccttgtgttgtgagttgacacctcttt 489 |||||| |||||||| |||| ||| |||||| ||||||||||||| | ||| | ||||| Sbjct: 18215834 aaccttatccttgatgatgacccagcaatccgtccttgtgttgtgtgctgagatctcttc 18215893 Query: 490 ctttgtatagctcgtagatgtc 511 |||||||||||| || ||||| Sbjct: 18215894 ttttgtatagctcctaaatgtc 18215915
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 344 aaaaatccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatgt 403 |||||||| ||||||||||| | |||||||||||||| |||||||| || ||||||||| Sbjct: 37953 aaaaatccttctgtcgaatcaccaccagcattgtttaggatggcatctccccctggatgt 38012 Query: 404 tcctccac 411 |||||||| Sbjct: 38013 tcctccac 38020 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Plus Query: 430 aaccttgtccttgattatgatccaacaatccttccttgtgttgtgagttgacacctcttt 489 |||||| |||||||| |||| ||| |||||| ||||||||||||| | ||| | ||||| Sbjct: 38146 aaccttatccttgatgatgacccagcaatccgtccttgtgttgtgtgctgagatctcttc 38205 Query: 490 ctttgtatagctcgtagatgtc 511 |||||||||||| || ||||| Sbjct: 38206 ttttgtatagctcctaaatgtc 38227
>gb|AY110094.1| Zea mays CL14316_-3 mRNA sequence Length = 606 Score = 61.9 bits (31), Expect = 3e-06 Identities = 91/113 (80%) Strand = Plus / Plus Query: 290 ccgatgcagaaatcctcgatgatgtcgaagactcgtgtgccatgctgcgggccgaaaaat 349 ||||||||||||||||||||||| |||||||| | ||||| || || || || Sbjct: 445 ccgatgcagaaatcctcgatgatatcgaagaccctagtgccgtgttgtggcccnnnnnng 504 Query: 350 ccctctgtcgaatcgctgccagcattgtttagaatggcatcaccacctggatg 402 |||||||| ||||| | |||||||| |||||||||||||| || |||||||| Sbjct: 505 ccctctgtggaatcaccaccagcattatttagaatggcatctccgcctggatg 557
>gb|AY267693.1| Bigelowiella natans nitrate reductase mRNA, complete cds; nuclear gene for plastid product Length = 872 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Minus Query: 390 caccacctggatgttcctccacgtatggagttacatcataaaccttgtccttgattatga 449 |||| |||||||||| ||| | ||||| || |||||||||||||||||||||| || | Sbjct: 454 caccccctggatgtttctcaaggtatgatgtcgcatcataaaccttgtccttgatgataa 395 Query: 450 tccaacaatc 459 |||||||||| Sbjct: 394 tccaacaatc 385
>ref|NM_104749.2| Arabidopsis thaliana B5 #5 AT1G60660 (B5 #5) mRNA, complete cds Length = 601 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 380 agaatggcatcaccacctggatgttcctccacgtatggagttacatcataaaccttgtcc 439 ||||| || |||||||| |||||||| || || || | ||| | |||||| || || || Sbjct: 323 agaatagcgtcaccaccaggatgttcttcaacataagaagtaatatcatagactttatct 264 Query: 440 ttgattatgatccaacaatccttccttgtgtt 471 |||||||||||||||||||| |||||| |||| Sbjct: 263 ttgattatgatccaacaatcgttccttttgtt 232
>gb|AY133575.1| Arabidopsis thaliana At1g60660/F8A5_18 mRNA, complete cds Length = 366 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 380 agaatggcatcaccacctggatgttcctccacgtatggagttacatcataaaccttgtcc 439 ||||| || |||||||| |||||||| || || || | ||| | |||||| || || || Sbjct: 263 agaatagcgtcaccaccaggatgttcttcaacataagaagtaatatcatagactttatct 204 Query: 440 ttgattatgatccaacaatccttccttgtgtt 471 |||||||||||||||||||| |||||| |||| Sbjct: 203 ttgattatgatccaacaatcgttccttttgtt 172
>gb|AY049297.1| Arabidopsis thaliana At1g60660/F8A5_18 mRNA, complete cds Length = 601 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 380 agaatggcatcaccacctggatgttcctccacgtatggagttacatcataaaccttgtcc 439 ||||| || |||||||| |||||||| || || || | ||| | |||||| || || || Sbjct: 323 agaatagcgtcaccaccaggatgttcttcaacataagaagtaatatcatagactttatct 264 Query: 440 ttgattatgatccaacaatccttccttgtgtt 471 |||||||||||||||||||| |||||| |||| Sbjct: 263 ttgattatgatccaacaatcgttccttttgtt 232
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 380 agaatggcatcaccacctggatgttcctccacgtatggagttacatcataaaccttgtcc 439 ||||| || |||||||| |||||||| || || || | ||| | |||||| || || || Sbjct: 66682 agaatagcgtcaccaccaggatgttcttcaacataagaagtaatatcatagactttatct 66741 Query: 440 ttgattatgatccaacaatccttccttgtgtt 471 |||||||||||||||||||| |||||| |||| Sbjct: 66742 ttgattatgatccaacaatcgttccttttgtt 66773
>ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB5-B) mRNA, complete cds Length = 1119 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 204 acatcataaaccttgccgtcgatgacgatccaacaatcctt 164
>gb|AC155074.12| Mus musculus chromosome 15, clone RP24-127H11, complete sequence Length = 184795 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 atcagaaccacacagctgggg 151 ||||||||||||||||||||| Sbjct: 17163 atcagaaccacacagctgggg 17143
>emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on chromosome 10 Contains the 3' end of the SLC18A2 gene for member 2 solute carrier family 18 (vesicular monoamine) and the 3' end of gene LOC118987, complete sequence Length = 104711 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 catcaccacctggatgttcct 407 ||||||||||||||||||||| Sbjct: 45082 catcaccacctggatgttcct 45102
>gb|AY063073.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810) mRNA, complete cds Length = 454 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 98 acatcataaaccttgccgtcgatgacgatccaacaatcctt 58
>gb|AF370256.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810) mRNA, complete cds Length = 702 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 184 acatcataaaccttgccgtcgatgacgatccaacaatcctt 144
>emb|AJ001370.1|OEJ001370 Olea europaea cytochrome b5 gene-2 Length = 752 Score = 42.1 bits (21), Expect = 2.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 387 catcaccacctggatgttcctccacgtatggagttacatcataaacctt 435 ||||||| || ||||| || |||| | |||| ||||||||||||||||| Sbjct: 215 catcacctccaggatgatcatccatgaatggggttacatcataaacctt 167
>emb|AL672262.11| Mouse DNA sequence from clone RP23-318G8 on chromosome 11, complete sequence Length = 101598 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 aaaccttgtccttgattatga 449 ||||||||||||||||||||| Sbjct: 74934 aaaccttgtccttgattatga 74914
>emb|BX829982.1|CNS0A1B1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB51ZC06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 622 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 152 acatcataaaccttgccgtcgatgacgatccaacaatcctt 112
>emb|BX841663.1|CNS09YKX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS59ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 620 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 165 acatcataaaccttgccgtcgatgacgatccaacaatcctt 125
>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete sequence Length = 240555 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 429 aaaccttgtccttgattatga 449 ||||||||||||||||||||| Sbjct: 81714 aaaccttgtccttgattatga 81694
>gb|AY086738.1| Arabidopsis thaliana clone 27167 mRNA, complete sequence Length = 706 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 204 acatcataaaccttgccgtcgatgacgatccaacaatcctt 164
>dbj|AB007802.1| Arabidopsis thaliana mRNA for cytochrome b5, complete cds Length = 631 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 422 acatcataaaccttgtccttgattatgatccaacaatcctt 462 ||||||||||||||| | | ||| | ||||||||||||||| Sbjct: 125 acatcataaaccttgccgtcgatgacgatccaacaatcctt 85
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 tcatcttcaggaaattgcaga 222 ||||||||||||||||||||| Sbjct: 1735867 tcatcttcaggaaattgcaga 1735887
>gb|AC005880.3|AC005880 citb_43_a_11, complete sequence Length = 146388 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 catcaccacctggatgttcct 407 ||||||||||||||||||||| Sbjct: 83908 catcaccacctggatgttcct 83928
>gb|BC058676.1| Mus musculus cache domain containing 1, mRNA (cDNA clone MGC:76350 IMAGE:6834428), complete cds Length = 4981 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 4573 gagtgctcccagcaccagaagcac 4596
>gb|BC080313.1| Mus musculus cache domain containing 1, mRNA (cDNA clone IMAGE:6854599), partial cds Length = 4067 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 2857 gagtgctcccagcaccagaagcac 2880
>gb|BC057356.1| Mus musculus cache domain containing 1, mRNA (cDNA clone IMAGE:6834152), partial cds Length = 4063 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 2859 gagtgctcccagcaccagaagcac 2882
>gb|AC155304.4| Mus musculus BAC clone RP24-212I6 from chromosome 8, complete sequence Length = 165128 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gttcgttgtcatcatcttca 210 |||||||||||||||||||| Sbjct: 624 gttcgttgtcatcatcttca 605
>ref|NM_198037.1| Mus musculus cache domain containing 1 (Cachd1), mRNA Length = 4981 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 4573 gagtgctcccagcaccagaagcac 4596
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 330 catgctgcgggccgaaaaatccct 353 ||||||||| |||||||||||||| Sbjct: 277040 catgctgcgtgccgaaaaatccct 277017
>ref|XM_596512.2| PREDICTED: Bos taurus similar to Doublecortin domain-containing protein 2 (RU2S protein) (LOC518323), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gttttgttcgttgtcatcat 205 |||||||||||||||||||| Sbjct: 1410 gttttgttcgttgtcatcat 1391
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence Length = 198036 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 181 aaacggttttgttcgttgtcatcatctt 208 |||| |||||||| |||||||||||||| Sbjct: 86188 aaacagttttgtttgttgtcatcatctt 86161
>ref|XM_455476.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F08723g predicted mRNA Length = 1311 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 tgttcgttgtcatcatcttc 209 |||||||||||||||||||| Sbjct: 485 tgttcgttgtcatcatcttc 466
>ref|XR_003347.1| PREDICTED: Mus musculus similar to pescadillo homolog 1, containing BRCT domain (LOC546077), mRNA Length = 2141 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gttcgttgtcatcatcttca 210 |||||||||||||||||||| Sbjct: 1445 gttcgttgtcatcatcttca 1426
>ref|XM_991872.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 2 (Cachd1), mRNA Length = 1830 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 632 gagtgctcccagcaccagaagcac 655
>ref|XM_991843.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 1 (Cachd1), mRNA Length = 1820 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 622 gagtgctcccagcaccagaagcac 645
>ref|XM_991907.1| PREDICTED: Mus musculus cache domain containing 1, transcript variant 3 (Cachd1), mRNA Length = 5321 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 4123 gagtgctcccagcaccagaagcac 4146
>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence, complete sequence Length = 96540 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 taaataaatctgagaaatgtatct 24 |||||||||||||||||| ||||| Sbjct: 85131 taaataaatctgagaaatatatct 85108
>emb|CR728646.2|CNS0GP64 Tetraodon nigroviridis full-length cDNA Length = 1434 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 583 ctcccagcacaagaagcaca 602 |||||||||||||||||||| Sbjct: 65 ctcccagcacaagaagcaca 84
>emb|AL359755.9| Human DNA sequence from clone RP13-104H2 on chromosome X Contains voltage-dependent anion channel 1-like pseudogene (VDAC1LP), complete sequence Length = 91026 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acactgctactagtatgaat 109 |||||||||||||||||||| Sbjct: 55500 acactgctactagtatgaat 55481
>gb|AY300015.1| Brassica juncea cytoplasmic male sterility-associated cytochrome oxidase subunit I (coxI-2) gene, complete cds; mitochondrial gene for mitochondrial product Length = 6244 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 cctttccttcacctttgttt 557 |||||||||||||||||||| Sbjct: 1187 cctttccttcacctttgttt 1206
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tgttcgttgtcatcatcttc 209 |||||||||||||||||||| Sbjct: 813838 tgttcgttgtcatcatcttc 813857
>emb|BX927153.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 6/10 Length = 349584 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gaaatcctcgatgatgtcgaagac 321 |||||||||||||| ||||||||| Sbjct: 271477 gaaatcctcgatgaagtcgaagac 271454
>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11 Length = 346161 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 cttcacctttgtttttggat 563 |||||||||||||||||||| Sbjct: 174280 cttcacctttgtttttggat 174261
>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence Length = 182428 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gttcgttgtcatcatcttca 210 |||||||||||||||||||| Sbjct: 169530 gttcgttgtcatcatcttca 169511
>emb|BX957290.7| Zebrafish DNA sequence from clone CH211-134G9 in linkage group 10, complete sequence Length = 164388 Score = 40.1 bits (20), Expect = 10.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 524 cctggaacgtgcatcctttccttcacct 551 ||||||| ||||||||||||||||||| Sbjct: 124714 cctggaatttgcatcctttccttcacct 124687
>gb|AC100748.2| Homo sapiens chromosome 17, clone CTD-2231E3, complete sequence Length = 133544 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gctgggggccctggagcagt 164 |||||||||||||||||||| Sbjct: 57963 gctgggggccctggagcagt 57944
>dbj|AB234906.1| Verbena x hybrida mRNA for anthocyanidin synthase, complete cds, cultivar: Tapien Pink Length = 1375 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 ctcctcatcatcagtcttcc 283 |||||||||||||||||||| Sbjct: 1125 ctcctcatcatcagtcttcc 1106
>gb|AC108089.2| Homo sapiens chromosome 5 clone CTD-2313B8, complete sequence Length = 133225 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tgggttcacacttgggagct 250 |||||||||||||||||||| Sbjct: 108605 tgggttcacacttgggagct 108624
>gb|AC022139.5| Homo sapiens chromosome 5 clone CTD-2255L15, complete sequence Length = 112978 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tgggttcacacttgggagct 250 |||||||||||||||||||| Sbjct: 7840 tgggttcacacttgggagct 7859
>gb|AC159911.7| Mus musculus 10 BAC RP23-465M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203420 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 610 atatgaggatgataatttccatgg 633 |||||||||||| ||||||||||| Sbjct: 128523 atatgaggatgaaaatttccatgg 128546
>dbj|AK004514.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190007F10 product:unclassifiable, full insert sequence Length = 289 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 79 gagtgctcccagcaccagaagcac 102
>gb|DQ019482.1| Lilium longiflorum clone LP26 cytochome b5-like mRNA, partial sequence Length = 692 Score = 40.1 bits (20), Expect = 10.0 Identities = 62/76 (81%) Strand = Plus / Minus Query: 387 catcaccacctggatgttcctccacgtatggagttacatcataaaccttgtccttgatta 446 |||||||||| ||||| ||||||| |||| || |||||||| |||||| | ||| | Sbjct: 174 catcaccaccaggatggtcctccataaatggggtgacatcatacaccttgccagagatga 115 Query: 447 tgatccaacaatcctt 462 ||| |||||||||||| Sbjct: 114 tgagccaacaatcctt 99
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gaaatcctcgatgatgtcgaagac 321 |||||||||||||| ||||||||| Sbjct: 2046869 gaaatcctcgatgaagtcgaagac 2046846
>gb|AC008278.3|AC008278 Homo sapiens BAC clone RP11-422A6 from 2, complete sequence Length = 136868 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 610 atatgaggatgataatttcc 629 |||||||||||||||||||| Sbjct: 14175 atatgaggatgataatttcc 14194
>emb|BX248502.17| Zebrafish DNA sequence from clone DKEY-284M10 in linkage group 8, complete sequence Length = 215273 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 652 gaacaatgtataattgactg 671 |||||||||||||||||||| Sbjct: 127357 gaacaatgtataattgactg 127376
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 cctttccttcacctttgttt 557 |||||||||||||||||||| Sbjct: 356772 cctttccttcacctttgttt 356753
>emb|AL592225.17| Mouse DNA sequence from clone RP23-278M14 on chromosome 1, complete sequence Length = 183397 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 ctttccttcacctttgtttt 558 |||||||||||||||||||| Sbjct: 179638 ctttccttcacctttgtttt 179657
>emb|AL670223.7| Mouse DNA sequence from clone RP23-29O24 on chromosome 4, complete sequence Length = 184644 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 578 gagtgctcccagcacaagaagcac 601 ||||||||||||||| |||||||| Sbjct: 140759 gagtgctcccagcaccagaagcac 140782
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 tgtcgttcgatttccccctg 527 |||||||||||||||||||| Sbjct: 2412353 tgtcgttcgatttccccctg 2412372
>gb|J05042.1|RABCOLVIII Rabbit type VIII collagen alpha-1 chain mRNA, complete cds Length = 2415 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cacagctgggggccctggag 160 |||||||||||||||||||| Sbjct: 1899 cacagctgggggccctggag 1880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,976,531 Number of Sequences: 3902068 Number of extensions: 6976531 Number of successful extensions: 136863 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 136529 Number of HSP's gapped (non-prelim): 330 length of query: 727 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 704 effective length of database: 17,143,297,704 effective search space: 12068881583616 effective search space used: 12068881583616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)