ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15g13 |
|---|---|
| Clone Library Name | barley_pub |
>VPS18_HUMAN (Q9P253) Vacuolar protein sorting 18 (hVPS18)| Length = 973 Score = 71.6 bits (174), Expect = 2e-12 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%) Frame = -3 Query: 661 PXYVFPCGHAFHANCLIAHVTRCTSQVQAERILNLQKQLSLMDRKAAKDNGGTGNGEPTV 482 P Y+F CGH FHA+CL+ V + R+ LQ++L A Sbjct: 864 PFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPAKGSARAKEAEGGAA 923 Query: 481 SSTPSVDKLRSQLDDAVASECPFCGDLMIKEISLPFVLPGE-SAEKASW 338 ++ PS ++L++ LD+ VA+EC +CG+LMI+ I PF+ P E+ SW Sbjct: 924 TAGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEQLSW 972
>VPS18_BRARE (P59015) Vacuolar protein sorting 18| Length = 974 Score = 69.3 bits (168), Expect = 1e-11 Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Frame = -3 Query: 661 PXYVFPCGHAFHANCLIAHVTRCTSQVQAERILNLQKQLSLMDRKAAKDNGGTGNGEPTV 482 P Y+F CGH FH +CL+ V S + ++ LQK+L+ + + E TV Sbjct: 864 PFYLFLCGHMFHYDCLLQEVIPHLSVYKQNKLDELQKKLAATTQTTKARH--KPREEDTV 921 Query: 481 S---STPSVDKLRSQLDDAVASECPFCGDLMIKEISLPFVLPGE-SAEKASW 338 S S ++++S +DD +A EC +CG+LMIK I PF+ P + E +SW Sbjct: 922 SLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKPFIDPQKFDQEMSSW 973
>VPS18_MOUSE (Q8R307) Vacuolar protein sorting 18| Length = 973 Score = 68.2 bits (165), Expect = 2e-11 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Frame = -3 Query: 661 PXYVFPCGHAFHANCLIAHVTRCTSQVQAERILNLQKQLSLMDRKAAKDNGGTGNGEPTV 482 P Y+F CGH FHA+CL+ V + R+ LQ++L Sbjct: 864 PFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQRKLGAAPPPTKGSVKAKEAEAGAA 923 Query: 481 SSTPSVDKLRSQLDDAVASECPFCGDLMIKEISLPFVLPGE-SAEKASW 338 + PS ++L++ LD+ VA+EC +CG+LMI+ I PF+ P E SW Sbjct: 924 AVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFIDPQRYEEEHLSW 972
>VPS18_DROME (Q24314) Vacuolar protein sorting 18 (Protein deep orange)| Length = 1002 Score = 63.5 bits (153), Expect = 5e-10 Identities = 34/109 (31%), Positives = 57/109 (52%) Frame = -3 Query: 661 PXYVFPCGHAFHANCLIAHVTRCTSQVQAERILNLQKQLSLMDRKAAKDNGGTGNGEPTV 482 P ++F CGH FH++CL HV ++ Q R+ L++QL + A+ G + + + Sbjct: 896 PFFIFICGHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAM 955 Query: 481 SSTPSVDKLRSQLDDAVASECPFCGDLMIKEISLPFVLPGESAEKASWE 335 L+++++D +A++C FCG L+I I PFV E WE Sbjct: 956 ELQRKRAALKTEIEDILAADCLFCG-LLISTIDQPFVDDWEQV-NVEWE 1002
>PEP3_YEAST (P27801) Vacuolar membrane protein PEP3 (Vacuolar protein sorting 18)| Length = 918 Score = 38.5 bits (88), Expect = 0.019 Identities = 25/105 (23%), Positives = 41/105 (39%) Frame = -3 Query: 652 VFPCGHAFHANCLIAHVTRCTSQVQAERILNLQKQLSLMDRKAAKDNGGTGNGEPTVSST 473 VFPCGH FH NC+I + NL+++ + +K N Sbjct: 840 VFPCGHCFHWNCIIRVILNSND-------YNLRQKTENFLKAKSKHN------------- 879 Query: 472 PSVDKLRSQLDDAVASECPFCGDLMIKEISLPFVLPGESAEKASW 338 + L++ + +C C D+ I +I P + + E A W Sbjct: 880 ------LNDLENIIVEKCGLCSDININKIDQPISI--DETELAKW 916
>PKD1_HUMAN (P98161) Polycystin-1 precursor (Autosomal dominant polycystic kidney| disease protein 1) Length = 4303 Score = 33.9 bits (76), Expect = 0.47 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = +3 Query: 360 SPGRTKGSEISLIIRSPQKGHSLATASSSCDLSLSTDGVLLTVGSPFPVPPLSFAAFLSI 539 +P R +G E++ I R P G L T ++S ++S + D L+ V P V + L + Sbjct: 1422 APTRARGPEVTFIYRDP--GSYLVTVTASNNISAANDSALVEVQEPVLVTSIKVNGSLGL 1479 Query: 540 KL 545 +L Sbjct: 1480 EL 1481
>GET2_YEAST (P40056) Glogi to ER traffic protein 2 (Meiotic nuclear division| protein 7) (Hydroxyurea resistance protein 2) Length = 285 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 562 NLQKQLSLMDRKAAKDNGGTGNGEPTVSSTPSVDKLRSQLDDAVAS 425 N+ QL L+ + AA GTG P SSTP + L S ++ + S Sbjct: 73 NVAPQLDLLKQLAAMQGQGTGKSTPQDSSTPDLLSLLSSMNTGMPS 118
>PEP3_SCHPO (O74925) Vacuolar membrane protein pep3 (Vacuolar protein sorting| 18) Length = 900 Score = 30.8 bits (68), Expect = 4.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -3 Query: 661 PXYVFPCGHAFHANCLIAHVTRCTSQ 584 P +FPC HAFH +C++ + S+ Sbjct: 848 PFVLFPCQHAFHRSCMLEKTYKLASE 873
>SPB1_DEBHA (Q6BNQ8) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)| (2'-O-ribose RNA methyltransferase) (S-adenosyl-L-methionine-dependent methyltransferase) Length = 831 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = -3 Query: 580 QAERILNLQKQLSLMDRKAAKDNGGTGNGEPTVSSTPSVDKLRSQLDD 437 Q E++ +K++ D + KDN + E +S +D+L +QLDD Sbjct: 418 QLEKLSKGKKKMIFNDEEIMKDNDINFDEEADANSEDEIDELEAQLDD 465
>YR46_CAEEL (Q09391) Hypothetical protein F47D12.6| Length = 100 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 299 HDHVYMIDNPVLDFLSXGWILL*RLCSFCICWLFGNER 186 HDH Y+I L LS ILL +C+ CIC+ R Sbjct: 22 HDHAYII----LILLSVILILLLLICNLCICYFIRQRR 55
>CI041_HUMAN (Q8N4J0) Protein C9orf41| Length = 409 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 19/82 (23%) Frame = -3 Query: 520 KDNGGTGNGEPTVSSTPSVDKLRSQLDDAV-------ASECPFCGDLMIKEISLPF---- 374 K+ G GNG+ +ST +DKL+S L V +E C +IKEI F Sbjct: 137 KEYGEDGNGKIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKER 196 Query: 373 --------VLPGESAEKASWEI 332 ++PG + +WEI Sbjct: 197 WDPSKVNILVPGAGLGRLAWEI 218
>ASR1_YEAST (Q06834) Alcohol-sensitive RING finger protein 1| Length = 288 Score = 30.0 bits (66), Expect = 6.7 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 24/112 (21%) Frame = -3 Query: 643 CGHAFHANCL-------------IAHVTRCTSQV-QAERILNLQKQLSLMDRKAAKDNGG 506 CGH FH NC+ I V +V + + L++ ++ M + A G Sbjct: 23 CGHKFHLNCIREWHKYSINLKCPICRVESTHLEVGEGQHALSINLKMGFMIKNAIDYVGA 82 Query: 505 TGNGEPTVSSTPSVD--------KLRSQL--DDAVASECPFCGDLMIKEISL 380 E T D +LR L D +C CGD + +SL Sbjct: 83 ETTNERNEDDTGEQDQEIEFLSERLRGTLVMDTIKIIQCSICGDTDVSRLSL 134
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Frame = -3 Query: 646 PCGHAFHANCLIAHV-------TRCTSQVQAE---RILNLQKQLSLMDRKAAKDNGGTG 500 PCGH F A C++ V +RC ++ A+ +L L++ + +D K A G G Sbjct: 32 PCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAKELNHVLPLKRLILKLDIKCAHAARGCG 90
>PZRN3_HUMAN (Q9UPQ7) PDZ domain-containing RING finger protein 3 (Ligand of| Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1066 Score = 29.6 bits (65), Expect = 8.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%) Frame = -3 Query: 646 PCGHAFHANCLIAHV-------TRCTSQVQAE---RILNLQKQLSLMDRKAAKDNGGTG 500 PCGH F A C++ V RC ++ A+ +L L++ + +D K A G G Sbjct: 32 PCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVLPLKRLILKLDIKCAYATRGCG 90
>YOY6_CAEEL (P34664) Hypothetical protein ZK652.6| Length = 575 Score = 29.6 bits (65), Expect = 8.8 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -3 Query: 244 GFCCDGCAVSVFVG----CLGTREVFLSSSCIEKKDLG 143 G CDGCA + F G CL + L SC K+ G Sbjct: 11 GVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYG 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,850,828 Number of Sequences: 219361 Number of extensions: 1978871 Number of successful extensions: 6368 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6346 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
