| Clone Name | rbags15f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482379.1| Oryza sativa (japonica cultivar-group), mRNA Length = 977 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 764 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 705 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 704 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 645 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 644 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 585 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 584 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 525 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 524 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 465 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 464 tctgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 405 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 404 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 345 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 344 aaaccttgcatctgttcctcatagaacccatggggg 309
>ref|XM_507581.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.13 mRNA Length = 983 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 770 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 711 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 710 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 651 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 650 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 591 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 590 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 531 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 530 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 471 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 470 tctgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 411 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 410 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 351 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 350 aaaccttgcatctgttcctcatagaacccatggggg 315
>ref|XM_507230.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0007M04.13 mRNA Length = 1096 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 766 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 707 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 706 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 647 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 646 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 587 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 586 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 527 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 526 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 467 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 466 tctgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 407 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 406 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 347 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 346 aaaccttgcatctgttcctcatagaacccatggggg 311
>dbj|AK104578.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-B02, full insert sequence Length = 977 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 764 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 705 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 704 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 645 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 644 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 585 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 584 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 525 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 524 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 465 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 464 tctgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 405 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 404 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 345 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 344 aaaccttgcatctgttcctcatagaacccatggggg 309
>dbj|AK099367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M06, full insert sequence Length = 983 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 770 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 711 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 710 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 651 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 650 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 591 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 590 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 531 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 530 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 471 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 470 tctgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 411 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 410 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 351 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 350 aaaccttgcatctgttcctcatagaacccatggggg 315
>dbj|AK059631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A04, full insert sequence Length = 1096 Score = 468 bits (236), Expect = e-128 Identities = 401/456 (87%) Strand = Plus / Minus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacactcgtaa 241 ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct: 766 tcaaacttgatcttcttagctgaaggctgaacgctgccgataaggggtggacactcgtaa 707 Query: 242 tcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattccttcg 301 || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| || Sbjct: 706 tcaatcccagcagctttgattcttttgcgacgcttctcatcccgttttacgattttgtca 647 Query: 302 accatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaattgct 361 |||| ||| ||||||||||| | |||||||||||| | |||| |||||||||||||| Sbjct: 646 accaactttttgtgctcttctattgttttatccttgttcagcctcctccgttcaattgct 587 Query: 362 acccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaactttc 421 ||||| |||| ||||||||| ||| |||||||| ||||| ||||| | ||||| |||| Sbjct: 586 acccgatcaattggtataaacccccgtcgcacacctttccacaattttggatgaattttc 527 Query: 422 tccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattcatctca 481 || ||||| |||| ||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct: 526 tcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagttgttcatctca 467 Query: 482 tcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgcttggac 541 || || |||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 466 tccgccacaatctttgctacctcagggttctcaaactcaatgaacccataatgcttggac 407 Query: 542 tttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaag 601 ||||||||||||||||| || |||| ||| | |||||||||| ||||| ||||||||| Sbjct: 406 tttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaag 347 Query: 602 aaaccttgcatctggtcctcatagaaaccatggggg 637 |||||||||||||| ||||||||||| ||||||||| Sbjct: 346 aaaccttgcatctgttcctcatagaacccatggggg 311
>emb|AJ575234.1|OSA575234 Oryza sativa (japonica cultivar-group) partial mRNA for TA8 protein Length = 590 Score = 396 bits (200), Expect = e-107 Identities = 356/408 (87%) Strand = Plus / Minus Query: 230 ggacactcgtaatcgataccagcagccttgattcttttgcgacgcttctcatcccgcttt 289 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 590 ggacactcgtaatcaatcccagcagctttgattcttttgcgacgcttctcatcccgtttt 531 Query: 290 acaattccttcgaccatcttcttgtgctcttccactgttttatccttactaagccgattc 349 || ||| || |||| ||| ||||||||||| | |||||||||||| | |||| || Sbjct: 530 acgattttgtcaaccaactttttgtgctcttctattgttttatccttgttcagcctcctc 471 Query: 350 cgttcaattgctacccggtcaactggtataaatcccttccgcacacccttccataatttg 409 ||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| ||||| Sbjct: 470 cgttcaattgctacccgatcaattggtataaacccccgtcgcacacctttccacaatttt 411 Query: 410 gcatgaactttctccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtag 469 | ||||| |||||| ||||| |||| ||||||||||| |||||||||||||| ||||||| Sbjct: 410 ggatgaattttctcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtag 351 Query: 470 ttattcatctcatcagcgacaatcttcgcgacctcagggttctcaaactcgatgaaccca 529 || ||||||||||| || |||||||| || |||||||||||||||||||| ||||||||| Sbjct: 350 ttgttcatctcatctgccacaatctttgctacctcagggttctcaaactcaatgaaccca 291 Query: 530 taatgcttggactttcctgtcttgcggttccgtgcaaccctgactcttttaacagcccca 589 ||||||||||||||||||||||||||||| || |||| ||| | |||||||||| ||| Sbjct: 290 taatgcttggactttcctgtcttgcggtttcgggcaatcctcaaccttttaacagttcca 231 Query: 590 aactgctgaaagaaaccttgcatctggtcctcatagaaaccatggggg 637 || ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 230 aattgctgaaagaaaccttgcatctgttcctcatagaacccatggggg 183
>gb|AY106169.1| Zea mays PCO082380 mRNA sequence Length = 1072 Score = 311 bits (157), Expect = 2e-81 Identities = 385/461 (83%) Strand = Plus / Minus Query: 177 cctcatcaaacttgatcttcttagctgaaggctgaacgcttccgataagggccggacact 236 ||||||| ||||||||||| || ||||| || |||| ||| || ||||| || ||||||| Sbjct: 800 cctcatcgaacttgatctttttcgctgatggttgaatgctccctataagagctggacact 741 Query: 237 cgtaatcgataccagcagccttgattcttttgcgacgcttctcatcccgctttacaattc 296 | || || |||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 740 catagtcaataccagctgccttgattcttttgcgacgctttccatcccgctttacaattc 681 Query: 297 cttcgaccatcttcttgtgctcttccactgttttatccttactaagccgattccgttcaa 356 |||| |||||||| ||||||||| | || || |||||||| | | | |||||||||| Sbjct: 680 cttcaaccatctttttgtgctctgctacagtcttatccttgttgtgtctcttccgttcaa 621 Query: 357 ttgctacccggtcaactggtataaatcccttccgcacacccttccataatttggcatgaa 416 ||||||| || ||||| |||||||||||| | ||||| || ||||||||||| | ||||| Sbjct: 620 ttgctactcgatcaacaggtataaatccccttcgcacccctttccataatttaggatgaa 561 Query: 417 ctttctccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagttattca 476 ||||||| || ||||| |||| ||||| ||| |||||||||| || |||||||||| Sbjct: 560 ctttctctggctcaacaagtgcaacttgcaaggtgcgctcaaacaagagatagttattca 501 Query: 477 tctcatcagcgacaatcttcgcgacctcagggttctcaaactcgatgaacccataatgct 536 ||||||| || || | ||| || || |||||||||||||||| ||||| ||||| |||| Sbjct: 500 tctcatctgctacgacctttgccacagcagggttctcaaactcaatgaatccatagtgct 441 Query: 537 tggactttcctgtcttgcggttccgtgcaaccctgactcttttaacagccccaaactgct 596 |||||||||||||||||||||| || || | ||| | || |||| | |||||||||||| Sbjct: 440 tggactttcctgtcttgcggttacgagcgatcctaagcctcttaatatccccaaactgct 381 Query: 597 gaaagaaaccttgcatctggtcctcatagaaaccatggggg 637 |||||| |||| ||||| |||||| ||||||||||||||| Sbjct: 380 taaagaaccctttcatctcgtcctcgtagaaaccatggggg 340
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 107 bits (54), Expect = 5e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 230 ggacactcgtaatcgataccagcagccttgattcttttgcgacgcttctcatcccgcttt 289 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 19715326 ggacactcgtaatcaatcccagcagctttgattcttttgcgacgcttctcatcccgtttt 19715385 Query: 290 acaattccttcgaccatcttcttgtgctcttccactgttttatcct 335 || ||| || |||| ||| ||||||||||| | ||||||||||| Sbjct: 19715386 acgattttgtcaaccaactttttgtgctcttctattgttttatcct 19715431 Score = 95.6 bits (48), Expect = 2e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 500 acctcagggttctcaaactcgatgaacccataatgcttggactttcctgtct 551 |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19716270 acctcagggttctcaaactcaatgaacccataatgcttggactttcctgtct 19716321 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 412 atgaactttctccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagtt 471 ||||| |||||| ||||| |||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 19716089 atgaattttctcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagtt 19716148 Query: 472 attcatctcatcagcgacaatctt 495 ||||||||||| || |||||||| Sbjct: 19716149 gttcatctcatctgccacaatctt 19716172 Score = 73.8 bits (37), Expect = 6e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgat 222 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 19714355 tcaaacttgatcttcttagctgaaggctgaacgctgccgat 19714395 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 348 tccgttcaattgctacccggtcaactggtataaatcccttccgcacacccttcca 402 ||||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| Sbjct: 19715517 tccgttcaattgctacccgatcaattggtataaacccccgtcgcacacctttcca 19715571 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 604 accttgcatctggtcctcatagaaaccatggggg 637 |||||||||||| ||||||||||| ||||||||| Sbjct: 19718189 accttgcatctgttcctcatagaacccatggggg 19718222 Score = 44.1 bits (22), Expect = 0.57 Identities = 49/58 (84%) Strand = Plus / Plus Query: 550 cttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaagaaacct 607 ||||||||| || |||| ||| | |||||||||| ||||| ||||||||||||||| Sbjct: 19716391 cttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaagaaacct 19716448
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 107 bits (54), Expect = 5e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 230 ggacactcgtaatcgataccagcagccttgattcttttgcgacgcttctcatcccgcttt 289 |||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 44277 ggacactcgtaatcaatcccagcagctttgattcttttgcgacgcttctcatcccgtttt 44336 Query: 290 acaattccttcgaccatcttcttgtgctcttccactgttttatcct 335 || ||| || |||| ||| ||||||||||| | ||||||||||| Sbjct: 44337 acgattttgtcaaccaactttttgtgctcttctattgttttatcct 44382 Score = 95.6 bits (48), Expect = 2e-16 Identities = 51/52 (98%) Strand = Plus / Plus Query: 500 acctcagggttctcaaactcgatgaacccataatgcttggactttcctgtct 551 |||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 45221 acctcagggttctcaaactcaatgaacccataatgcttggactttcctgtct 45272 Score = 95.6 bits (48), Expect = 2e-16 Identities = 75/84 (89%) Strand = Plus / Plus Query: 412 atgaactttctccggtgggacaagcgcaatttgcagagtgtgctcaaacaacaggtagtt 471 ||||| |||||| ||||| |||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 45040 atgaattttctcaggtggaacaatcgcaatttgcaaagtgtgctcaaacagcaggtagtt 45099 Query: 472 attcatctcatcagcgacaatctt 495 ||||||||||| || |||||||| Sbjct: 45100 gttcatctcatctgccacaatctt 45123 Score = 73.8 bits (37), Expect = 6e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 182 tcaaacttgatcttcttagctgaaggctgaacgcttccgat 222 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 43306 tcaaacttgatcttcttagctgaaggctgaacgctgccgat 43346 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 348 tccgttcaattgctacccggtcaactggtataaatcccttccgcacacccttcca 402 ||||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| Sbjct: 44468 tccgttcaattgctacccgatcaattggtataaacccccgtcgcacacctttcca 44522 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 604 accttgcatctggtcctcatagaaaccatggggg 637 |||||||||||| ||||||||||| ||||||||| Sbjct: 47140 accttgcatctgttcctcatagaacccatggggg 47173 Score = 44.1 bits (22), Expect = 0.57 Identities = 49/58 (84%) Strand = Plus / Plus Query: 550 cttgcggttccgtgcaaccctgactcttttaacagccccaaactgctgaaagaaacct 607 ||||||||| || |||| ||| | |||||||||| ||||| ||||||||||||||| Sbjct: 45342 cttgcggtttcgggcaatcctcaaccttttaacagttccaaattgctgaaagaaacct 45399
>gb|AF465933.1| Elaeis oleifera RNA binding protein mRNA, complete cds Length = 958 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 450 tgtgctcaaacaacaggtagttattcatctcatcagcgacaatcttcgcgacctcagggt 509 |||||||||| || ||||| || ||||||||||| || |||| ||| || |||||||||| Sbjct: 415 tgtgctcaaataataggtaattgttcatctcatcggccacaaccttggccacctcagggt 356 Query: 510 tctcaaa 516 | ||||| Sbjct: 355 tttcaaa 349 Score = 48.1 bits (24), Expect = 0.037 Identities = 42/48 (87%) Strand = Plus / Minus Query: 586 cccaaactgctgaaagaaaccttgcatctggtcctcatagaaaccatg 633 |||||||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct: 279 cccaaactgctggaagaatccttgcatttgctcctcgtagaatccatg 232
>ref|XM_505404.1| Yarrowia lipolytica CLIB122, YALI0F14245g predicted mRNA Length = 828 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 608 tgcatctggtcctcatagaaaccatggggg 637 |||||||| ||||| ||||||||||||||| Sbjct: 359 tgcatctgctcctcgtagaaaccatggggg 330
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 608 tgcatctggtcctcatagaaaccatggggg 637 |||||||| ||||| ||||||||||||||| Sbjct: 1915897 tgcatctgctcctcgtagaaaccatggggg 1915868
>gb|AC079320.9| Homo sapiens chromosome 5, clone RP11-729C24, complete sequence Length = 160042 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ggatacaaaaccaaagtatga 74 ||||||||||||||||||||| Sbjct: 53101 ggatacaaaaccaaagtatga 53121
>gb|AC116366.2| Homo sapiens chromosome 5 clone RP11-89G4, complete sequence Length = 169385 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ggatacaaaaccaaagtatga 74 ||||||||||||||||||||| Sbjct: 118064 ggatacaaaaccaaagtatga 118084
>gb|AC156804.2| Pan troglodytes BAC clone CH251-371A18 from chromosome unknown, complete sequence Length = 232130 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 ggatacaaaaccaaagtatga 74 ||||||||||||||||||||| Sbjct: 114467 ggatacaaaaccaaagtatga 114487
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 actcgtaatcgataccagcagcct 257 |||||||||||||||| ||||||| Sbjct: 1658722 actcgtaatcgataccggcagcct 1658745
>gb|AY648761.1| Danio rerio nucleolin mRNA, complete cds Length = 2672 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tcatcaaacttgatcttctt 198 |||||||||||||||||||| Sbjct: 2074 tcatcaaacttgatcttctt 2055
>ref|XM_456571.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A05764g) partial mRNA Length = 771 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 513 caaactcgatgaacccataatgcttggactttcctgtctt 552 |||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 478 caaattcgatgaacccatagtgcttcgacttaccagtctt 439
>gb|AC150896.6| Mus musculus BAC clone RP23-414N3 from chromosome 1, complete sequence Length = 207503 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaagatccatctgcctcctg 166 |||||||||||||||||||| Sbjct: 27087 aaagatccatctgcctcctg 27068
>ref|XM_569763.1| Cryptococcus neoformans var. neoformans JEC21 ribosomal large subunit biogenesis-related protein (CNC05560) partial mRNA Length = 1581 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 actcgtaatcgataccagcagcct 257 |||||||||||||||| ||||||| Sbjct: 1452 actcgtaatcgataccggcagcct 1429
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 40.1 bits (20), Expect = 8.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 513 caaactcgatgaacccataatgcttggactttcctgtctt 552 |||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 466577 caaattcgatgaacccatagtgcttcgacttaccagtctt 466538
>emb|BX511065.4| Zebrafish DNA sequence from clone DKEY-32I16 in linkage group 7, complete sequence Length = 104505 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 589 aaactgctgaaagaaacctt 608 |||||||||||||||||||| Sbjct: 23828 aaactgctgaaagaaacctt 23809
>gb|AC010024.5| Drosophila melanogaster 3L BAC RP98-26E20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181004 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gttcaattgctacccggtca 370 |||||||||||||||||||| Sbjct: 151562 gttcaattgctacccggtca 151543
>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence Length = 192263 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 598 aaagaaaccttgcatctggt 617 |||||||||||||||||||| Sbjct: 58431 aaagaaaccttgcatctggt 58450
>gb|AC069407.2| Drosophila melanogaster 3L BAC RP98-30I5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 183714 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gttcaattgctacccggtca 370 |||||||||||||||||||| Sbjct: 89352 gttcaattgctacccggtca 89371
>ref|XM_683662.1| PREDICTED: Danio rerio similar to Cic protein (LOC560266), mRNA Length = 1842 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 aaacttgatcttcttagctgaagg 207 |||||||||||| ||||||||||| Sbjct: 1125 aaacttgatctttttagctgaagg 1102
>ref|NM_001003839.1| Danio rerio nucleolin (ncl), mRNA Length = 2672 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tcatcaaacttgatcttctt 198 |||||||||||||||||||| Sbjct: 2074 tcatcaaacttgatcttctt 2055
>gb|AY166587.1| Cyprinus carpio nucleolin mRNA, complete cds Length = 2784 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 tcatcaaacttgatcttctt 198 |||||||||||||||||||| Sbjct: 2185 tcatcaaacttgatcttctt 2166
>emb|BX004874.11| Zebrafish DNA sequence from clone CH211-39E15 in linkage group 19, complete sequence Length = 165154 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 aaacttgatcttcttagctgaagg 207 |||||||||||| ||||||||||| Sbjct: 139243 aaacttgatctttttagctgaagg 139266
>gb|AE003562.3| Drosophila melanogaster chromosome 3L, section 23 of 83 of the complete sequence Length = 255329 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gttcaattgctacccggtca 370 |||||||||||||||||||| Sbjct: 65839 gttcaattgctacccggtca 65858
>emb|AL049831.2|CNS00008 Human chromosome 14 DNA sequence BAC R-330O19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 218956 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 575 cttttaacagccccaaactg 594 |||||||||||||||||||| Sbjct: 195243 cttttaacagccccaaactg 195224
>emb|AL132633.2|CNS01DT3 Human chromosome 14 DNA sequence BAC C-2216L14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 120571 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 cttttaacagccccaaactg 594 |||||||||||||||||||| Sbjct: 107747 cttttaacagccccaaactg 107766 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,002,912 Number of Sequences: 3902068 Number of extensions: 5002912 Number of successful extensions: 95581 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95454 Number of HSP's gapped (non-prelim): 117 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)