ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15f04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 359 bits (181), Expect = 7e-96 Identities = 302/342 (88%), Gaps = 1/342 (0%) Strand = Plus / Minus Query: 262 tcctgttccttctgcttttggatggcttcaaccttttncatgtactcgtctgtgattttt 321 ||||||||||||||||||||||| ||||| | ||||| |||||||||||| || | |||| Sbjct: 882 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 823 Query: 322 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 381 |||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 822 tgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763 Query: 382 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 441 ||||| || |||||||| || |||| ||||||||| || ||||||||||||||||||||| Sbjct: 762 ttatcgtaagctttgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703 Query: 442 gataacttagctacaagnttttgtcatctcctttctgcgatcagatgtcaatggtgggac 501 | ||| ||||| || || ||||| || ||||||||||| ||||| ||||||||||| || Sbjct: 702 gctaatttagcaac-agtttttgccaattcctttctgcggtcagaagtcaatggtggaac 644 Query: 502 agtgactcgtatcacttctncatcattgcttggtgttaccccaatatttgcagcaactat 561 ||||||||| ||||||||| |||||||||||||||| ||||| | ||||||||||||||| Sbjct: 643 agtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactat 584 Query: 562 agctttctcaatgagcttgaggcaagacttgtcatatggctg 603 | ||||||||||||||||||| | || |||||||||||||| Sbjct: 583 tgttttctcaatgagcttgagggaggatttgtcatatggctg 542
>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full insert sequence Length = 1226 Score = 335 bits (169), Expect = 1e-88 Identities = 300/342 (87%), Gaps = 2/342 (0%) Strand = Plus / Minus Query: 262 tcctgttccttctgcttttggatggcttcaaccttttncatgtactcgtctgtgattttt 321 ||||||||||||||||||||||| ||||| | ||||| |||||||||||| || | |||| Sbjct: 881 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 822 Query: 322 tgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctagc 381 ||||||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct: 821 -gtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttccttctcaagc 763 Query: 382 ttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttca 441 ||||| || ||| |||| || |||| ||||||||| || ||||||||||||||||||||| Sbjct: 762 ttatcgtaagctatgatggcatctcttcttatgttccttatagcaaccttgccttcttca 703 Query: 442 gataacttagctacaagnttttgtcatctcctttctgcgatcagatgtcaatggtgggac 501 | ||| ||||| ||| | ||||| || ||||||||||| ||||| ||||||||||| || Sbjct: 702 gctaatttagcaaca-gtttttgccaattcctttctgcggtcagaagtcaatggtggaac 644 Query: 502 agtgactcgtatcacttctncatcattgcttggtgttaccccaatatttgcagcaactat 561 ||||||||| ||||||||| |||||||||||||||| ||||| | ||||||||||||||| Sbjct: 643 agtgactcgaatcacttctccatcattgcttggtgtaacccccagatttgcagcaactat 584 Query: 562 agctttctcaatgagcttgaggcaagacttgtcatatggctg 603 | ||||||||||||||||||| | || |||||||||||||| Sbjct: 583 tgttttctcaatgagcttgagggaggatttgtcatatggctg 542
>gb|AY108240.1| Zea mays PCO100302 mRNA sequence Length = 776 Score = 281 bits (142), Expect = 1e-72 Identities = 266/307 (86%), Gaps = 1/307 (0%) Strand = Plus / Minus Query: 294 cttttncatgtactcgtctgtgattttttgtagatcggctgataaatccttcacattatc 353 ||||| |||||||||||| |||| ||||||||| || ||||| ||||| |||||||| || Sbjct: 775 ctttttcatgtactcgtccgtgactttttgtaggtcagctgacaaatctttcacattgtc 716 Query: 354 ttcagaaagtttcttttccttctctagcttatcataggctttgattgcgtctcgtcttat 413 ||||||||| ||||||||||||| ||| ||||| || ||||||||||| |||| |||||| Sbjct: 715 ttcagaaagcttcttttccttctgtagtttatcgtaagctttgattgcatctcttcttat 656 Query: 414 gtttctgatagcaaccttgccttcttcagataacttagctacaagnttttgtcatctcct 473 ||| || |||||||||||||| ||||||| || |||||||| ||| | || |||| Sbjct: 655 gttccttatagcaaccttgccatcttcagccaatttagctactgtctttgctaat-tcct 597 Query: 474 ttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctncatcattgcttg 533 ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| Sbjct: 596 ttctgcgatcagatgtcaatggtgggacagtcactcgtatcacttctccgtcattgcttg 537 Query: 534 gtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggcaagacttgt 593 |||| || |||| |||||| |||||||||| |||||| || |||||||||| ||||||| Sbjct: 536 gtgtcacaccaagatttgcggcaactatagttttctcgataagcttgaggcttgacttgt 477 Query: 594 catatgg 600 ||||||| Sbjct: 476 catatgg 470
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 149 bits (75), Expect = 1e-32 Identities = 104/114 (91%) Strand = Plus / Minus Query: 471 cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctncatcattgc 530 |||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||| Sbjct: 22952090 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 22952031 Query: 531 ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 584 ||||||| ||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct: 22952030 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 22951977 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 321 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 373 ||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct: 22954166 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 22954114 Score = 67.9 bits (34), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 263 cctgttccttctgcttttggatggcttcaaccttttncatgtactcgtc 311 |||||||||||||||||||||| ||||| | ||||| |||||||||||| Sbjct: 22954341 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 22954293
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 149 bits (75), Expect = 1e-32 Identities = 104/114 (91%) Strand = Plus / Minus Query: 471 cctttctgcgatcagatgtcaatggtgggacagtgactcgtatcacttctncatcattgc 530 |||||||||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||| Sbjct: 27304 cctttctgcggtcagaagtcaatggtggaacagtgactcgaatcacttctccatcattgc 27245 Query: 531 ttggtgttaccccaatatttgcagcaactatagctttctcaatgagcttgaggc 584 ||||||| ||||| | ||||||||||||||| | |||||||||||||||||||| Sbjct: 27244 ttggtgtaacccccagatttgcagcaactattgttttctcaatgagcttgaggc 27191 Score = 73.8 bits (37), Expect = 6e-10 Identities = 49/53 (92%) Strand = Plus / Minus Query: 321 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttcct 373 ||||||||| || || ||||||||||| ||||||||||||||||||||||||| Sbjct: 29380 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttcttttcct 29328 Score = 67.9 bits (34), Expect = 4e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 263 cctgttccttctgcttttggatggcttcaaccttttncatgtactcgtc 311 |||||||||||||||||||||| ||||| | ||||| |||||||||||| Sbjct: 29555 cctgttccttctgcttttggatagcttcgatctttttcatgtactcgtc 29507
>emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein Length = 946 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 333 tgataaatccttcacattatcttcagaaagtttcttttccttctctagcttatcataggc 392 |||||| ||||||||||||||||| || || || |||||||| || || |||||||||| Sbjct: 600 tgataagtccttcacattatcttctgagagctttttttccttttcaagtttatcatagga 541 Query: 393 tttgattgcgtctcgtcttat 413 ||| || || |||| |||||| Sbjct: 540 tttaatggcatctcttcttat 520
>emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ribosome recycling factor Length = 1109 Score = 58.0 bits (29), Expect = 4e-05 Identities = 142/180 (78%) Strand = Plus / Minus Query: 261 ctcctgttccttctgcttttggatggcttcaaccttttncatgtactcgtctgtgatttt 320 ||||||||| |||||||| | ||| | |||||||| | ||||||||| || || | || Sbjct: 827 ctcctgttctttctgcttgtagatagactcaaccttcttcatgtactcatcggtcaactt 768 Query: 321 ttgtagatcggctgataaatccttcacattatcttcagaaagtttcttttccttctctag 380 || ||||| || |||| || |||||||||||||| ||||| || ||||||||||| || Sbjct: 767 ctgcagatcagccgataggtctttcacattatcttccgaaagctttttttccttctcaag 708 Query: 381 cttatcataggctttgattgcgtctcgtcttatgtttctgatagcaaccttgccttcttc 440 || ||||| | ||| | || |||| ||||||||| || | |||||||| |||||||| Sbjct: 707 tttttcataagatttcagagcatctcttcttatgttcctcactgcaacctttccttcttc 648
>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence Length = 97685 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 276 cttttggatggcttcaaccttt 297 |||||||||||||||||||||| Sbjct: 13586 cttttggatggcttcaaccttt 13607
>gb|AY112589.1| Zea mays CL61174_1 mRNA sequence Length = 414 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 tcagctcctgttccttctgcttttggatgg 286 |||| ||||||||||||||||| ||||||| Sbjct: 374 tcagttcctgttccttctgcttctggatgg 403
>ref|NM_116184.2| Arabidopsis thaliana unknown protein AT3G63190 mRNA, complete cds Length = 1235 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence Length = 197161 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 256 ctcagctcctgttccttctgc 276 ||||||||||||||||||||| Sbjct: 191378 ctcagctcctgttccttctgc 191358
>gb|AC103604.4| Mus musculus chromosome 3, clone RP23-95A20, complete sequence Length = 170670 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 556 aactatagctttctcaatgag 576 ||||||||||||||||||||| Sbjct: 162970 aactatagctttctcaatgag 162950
>emb|AL136967.5| Human DNA sequence from clone RP1-149M18 on chromosome 6 Contains the NCR2 gene for natural cytotoxicity triggering receptor 2 and four CpG islands, complete sequence Length = 115295 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aggaaactgagacttttagag 21 ||||||||||||||||||||| Sbjct: 14694 aggaaactgagacttttagag 14714
>gb|AY092982.1| Arabidopsis thaliana putative protein (At3g63190) mRNA, complete cds Length = 1173 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 804 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 752
>gb|AC160655.2| Pan troglodytes BAC clone CH251-26F13 from chromosome unknown, complete sequence Length = 197508 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 aggaaactgagacttttagag 21 ||||||||||||||||||||| Sbjct: 175069 aggaaactgagacttttagag 175049
>gb|AY056778.1| Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds Length = 1212 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 866 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 814
>gb|AC105155.9| Mus musculus chromosome 3, clone RP24-346C8, complete sequence Length = 162298 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 556 aactatagctttctcaatgag 576 ||||||||||||||||||||| Sbjct: 134142 aactatagctttctcaatgag 134162
>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence Length = 134517 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 tcagaaatcttgtggccagtt 222 ||||||||||||||||||||| Sbjct: 58113 tcagaaatcttgtggccagtt 58133
>gb|AF372883.1|AF372883 Arabidopsis thaliana AT3g63190/F16M2_40 mRNA, complete cds Length = 1050 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 786 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 734
>emb|BX822699.1|CNS0A72X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB59ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1225 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 916 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 864
>emb|BX825146.1|CNS0A6FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZF09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1062 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 802 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 750
>gb|BT002678.1| Arabidopsis thaliana At3g63190/F16M2_40 gene, complete cds Length = 828 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 337 aaatccttcacattatcttcagaaagtttcttttccttctctagcttatcata 389 ||||||||||| || ||||| || || ||||| |||||||| || |||||||| Sbjct: 737 aaatccttcacgttgtcttctgacagcttcttctccttctcgagtttatcata 685
>gb|AC160057.2| Pan troglodytes BAC clone CH251-416M4 from chromosome unknown, complete sequence Length = 168684 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 aggaaactgagacttttagag 21 ||||||||||||||||||||| Sbjct: 121789 aggaaactgagacttttagag 121809
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ctcagctcctgttccttctgc 276 ||||||||||||||||||||| Sbjct: 115698 ctcagctcctgttccttctgc 115718
>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence Length = 197112 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 gttccttctgcttttggatggctt 289 ||||| |||||||||||||||||| Sbjct: 59770 gttccctctgcttttggatggctt 59793
>ref|XM_956989.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial mRNA Length = 8481 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ttcttttccttctctagctt 383 |||||||||||||||||||| Sbjct: 3755 ttcttttccttctctagctt 3736
>ref|XM_328654.1| Neurospora crassa OR74A hypothetical protein (NCU07949.1) partial mRNA Length = 8481 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ttcttttccttctctagctt 383 |||||||||||||||||||| Sbjct: 3755 ttcttttccttctctagctt 3736
>gb|AC111010.5| Mus musculus BAC clone RP23-419L21 from chromosome 14, complete sequence Length = 205141 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttcttttccttctctagctt 383 |||||||||||||||||||| Sbjct: 23505 ttcttttccttctctagctt 23524
>gb|AC166290.7| Mus musculus BAC RP23-14P17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 242055 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tcatctcctttctgcgatca 484 |||||||||||||||||||| Sbjct: 96145 tcatctcctttctgcgatca 96126
>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence Length = 176643 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 gttccttctgcttttggatggctt 289 ||||| |||||||||||||||||| Sbjct: 104744 gttccctctgcttttggatggctt 104767
>ref|XM_742778.1| Aspergillus fumigatus Af293 tRNA-splicing endonuclease (Afu6g02060) partial mRNA Length = 6231 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 tcataggctttgattgcgtc 404 |||||||||||||||||||| Sbjct: 3143 tcataggctttgattgcgtc 3124
>ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 1 (LOC482083), mRNA Length = 15160 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6612 cagctcctgttccttctgct 6593
>ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 8 (LOC482083), mRNA Length = 14734 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6186 cagctcctgttccttctgct 6167
>ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 7 (LOC482083), mRNA Length = 14734 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6186 cagctcctgttccttctgct 6167
>ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 6 (LOC482083), mRNA Length = 15175 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6627 cagctcctgttccttctgct 6608
>ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 5 (LOC482083), mRNA Length = 14749 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6201 cagctcctgttccttctgct 6182
>ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 4 (LOC482083), mRNA Length = 14863 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6315 cagctcctgttccttctgct 6296
>ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1, transcript variant 2 (LOC482083), mRNA Length = 14812 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 cagctcctgttccttctgct 277 |||||||||||||||||||| Sbjct: 6264 cagctcctgttccttctgct 6245
>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence Length = 167364 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ataggctttgattgcgtctc 406 |||||||||||||||||||| Sbjct: 78585 ataggctttgattgcgtctc 78566
>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence Length = 232416 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agaaagtttcttttccttct 376 |||||||||||||||||||| Sbjct: 57587 agaaagtttcttttccttct 57606
>gb|AC160063.12| Mus musculus 10 BAC RP24-502H14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158603 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 tagctttctcaatgagcttg 580 |||||||||||||||||||| Sbjct: 80130 tagctttctcaatgagcttg 80149
>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence Length = 208416 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 agaaagtttcttttccttct 376 |||||||||||||||||||| Sbjct: 203871 agaaagtttcttttccttct 203890
>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the 5' end of the GRID1 gene for glutamate receptor (ionotropic) delta 1, the 3' end of the gene for friend of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete sequence Length = 167780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cttgctcagctcctgttcct 271 |||||||||||||||||||| Sbjct: 64036 cttgctcagctcctgttcct 64055
>gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, complete cds Length = 7944 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ccttcacattatcttcagaa 360 |||||||||||||||||||| Sbjct: 3880 ccttcacattatcttcagaa 3861
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gttccttctgcttttggatg 285 |||||||||||||||||||| Sbjct: 2037164 gttccttctgcttttggatg 2037145
>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland Research Institute) complete sequence Length = 210896 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agtcttagcaagagtccaac 150 |||||||||||||||||||| Sbjct: 193966 agtcttagcaagagtccaac 193985
>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the 3' end of the Tex14 gene for testis expressed gene 14, complete sequence Length = 200501 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cagctcctgttccttctgcttttg 281 ||||||||||| |||||||||||| Sbjct: 186131 cagctcctgtttcttctgcttttg 186154
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17, complete sequence Length = 154824 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tgtcatctcctttctgcgat 482 |||||||||||||||||||| Sbjct: 148312 tgtcatctcctttctgcgat 148331
>emb|BX511254.6| Zebrafish DNA sequence from clone DKEYP-90G2 in linkage group 17, complete sequence Length = 185139 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tgtcatctcctttctgcgat 482 |||||||||||||||||||| Sbjct: 138824 tgtcatctcctttctgcgat 138843
>gb|AC007518.32| Mus musculus chromosome , clone CT7-345D4, complete sequence Length = 193714 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tcatctcctttctgcgatca 484 |||||||||||||||||||| Sbjct: 175471 tcatctcctttctgcgatca 175452
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tgttccttctgcttttggat 284 |||||||||||||||||||| Sbjct: 145310 tgttccttctgcttttggat 145291
>dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530045A01 product:hypothetical protein, full insert sequence Length = 2593 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 gttccttctgcttttggatggctt 289 ||||| |||||||||||||||||| Sbjct: 1241 gttccctctgcttttggatggctt 1264
>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence Length = 191309 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 tgttccttctgcttttggat 284 |||||||||||||||||||| Sbjct: 14094 tgttccttctgcttttggat 14075
>ref|XM_626980.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_700), partial mRNA Length = 5739 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 tcctgttccttctgcttttg 281 |||||||||||||||||||| Sbjct: 4173 tcctgttccttctgcttttg 4154
>gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gtctcgtcttatgtttctga 421 |||||||||||||||||||| Sbjct: 133775 gtctcgtcttatgtttctga 133756
>dbj|BS000019.1| Pan troglodytes chromosome 22 clone:PTB-023I17, map 22, complete sequences Length = 141751 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gaaagtttcttttccttctc 377 |||||||||||||||||||| Sbjct: 77045 gaaagtttcttttccttctc 77064
>gb|AC145738.4| Mus musculus BAC clone RP24-293H7 from 3, complete sequence Length = 135567 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 attgcttggtgttaccccaa 545 |||||||||||||||||||| Sbjct: 22759 attgcttggtgttaccccaa 22740
>gb|AC147968.2| Gallus gallus BAC clone CH261-119F24 from chromosome unknown, complete sequence Length = 209917 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 accttgccttcttcagataa 446 |||||||||||||||||||| Sbjct: 165413 accttgccttcttcagataa 165432
>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete sequence Length = 158364 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cttttccttctctagcttat 385 |||||||||||||||||||| Sbjct: 111121 cttttccttctctagcttat 111140
>emb|AL928543.5| Mouse DNA sequence from clone RP23-345P1 on chromosome 2, complete sequence Length = 90551 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ataggctttgattgcgtctc 406 |||||||||||||||||||| Sbjct: 24017 ataggctttgattgcgtctc 23998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,474,586 Number of Sequences: 3902068 Number of extensions: 5474586 Number of successful extensions: 120525 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120349 Number of HSP's gapped (non-prelim): 173 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
