ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14p24 |
|---|---|
| Clone Library Name | barley_pub |
>PTP3_DICDI (P54637) Tyrosine-protein phosphatase 3 (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase 3) Length = 989 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/55 (30%), Positives = 34/55 (61%) Frame = +2 Query: 35 TAVCTNSTIHNTGNTKYSYTILNTGNTNSLSSIKLPHFPPSRSTACPELDGTKQQ 199 +++ +NS++ N+G+ S T +T ++NS+SS PPS T+ +LD +++ Sbjct: 370 SSLFSNSSLSNSGSGSASTTSTSTSSSNSMSSSP----PPSLKTSFSQLDEDREK 420
>YO43_CAEEL (P34681) Hypothetical protein ZK757.3| Length = 1040 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 243 NSGCVSTWRLCAGNHCCLVPSSSGQAVDLDGGK 145 NS TW+ + C +P+++GQA+DL+GGK Sbjct: 247 NSANFYTWK----SSCYRIPTAAGQALDLEGGK 275
>COT2_BOVIN (Q9TTR7) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| Length = 414 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/97 (23%), Positives = 41/97 (42%) Frame = -2 Query: 473 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 294 R+ Q+GR+P T PS Q L +G +C L G + +++ A Sbjct: 145 RREAVQRGRMP-PTQPSHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191 Query: 293 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 183 + G ++ N +++C+L +L V W+R Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228
>SNT1_YEAST (P25357) Probable DNA-binding protein SNT1| Length = 1226 Score = 31.2 bits (69), Expect = 3.1 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%) Frame = +2 Query: 53 STIHNT----GNTKYSYTILNTGNTNSLSSIKLPHFPPSRSTACP 175 STI +T GN++YS ++ N S SS + HFP + S A P Sbjct: 130 STITHTNTDIGNSRYSRKTMSRYNPQSTSSTNVTHFPSALSNAPP 174
>COT2_RAT (O09018) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) (Ovalbumin upstream promoter beta nuclear receptor) (COUPb) Length = 414 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/97 (22%), Positives = 41/97 (42%) Frame = -2 Query: 473 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 294 R+ Q+GR+P T P+ Q L +G +C L G + +++ A Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191 Query: 293 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 183 + G ++ N +++C+L +L V W+R Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228
>COT2_MOUSE (P43135) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/97 (22%), Positives = 41/97 (42%) Frame = -2 Query: 473 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 294 R+ Q+GR+P T P+ Q L +G +C L G + +++ A Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191 Query: 293 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 183 + G ++ N +++C+L +L V W+R Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228
>COT2_HUMAN (P24468) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| (Apolipoprotein AI regulatory protein 1) (ARP-1) Length = 414 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/97 (22%), Positives = 41/97 (42%) Frame = -2 Query: 473 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 294 R+ Q+GR+P T P+ Q L +G +C L G + +++ A Sbjct: 145 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 191 Query: 293 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 183 + G ++ N +++C+L +L V W+R Sbjct: 192 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 228
>DPOL_HBVWJ (P17394) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 30.4 bits (67), Expect = 5.4 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 5/49 (10%) Frame = +2 Query: 32 HTAVCTNST---IHNTGNTKYSYTILNT--GNTNSLSSIKLPHFPPSRS 163 HT +C +S+ +H + +Y+ ++T G+++S +++L HFPP+ S Sbjct: 264 HTHICASSSSSCLHQSAVRTAAYSPISTSKGHSSSGHAVELHHFPPNSS 312
>COT2_CHICK (Q90733) COUP transcription factor 2 (COUP-TF2) (COUP-TF II)| Length = 410 Score = 30.4 bits (67), Expect = 5.4 Identities = 22/97 (22%), Positives = 41/97 (42%) Frame = -2 Query: 473 RKGRPQKGRLPNSTHPSFRQVVLQDGAMTSCSKGYLNLSRHAVSVQLCGTLEVVIEANSQ 294 R+ Q+GR+P T P+ Q L +G +C L G + +++ A Sbjct: 141 RREAVQRGRMP-PTQPTHGQFALTNGDPLNCHS------------YLSGYISLLLRAEPY 187 Query: 293 SGTIKGEVSIKAQNCNITQDVCQLGDSVLEITVAWSR 183 + G ++ N +++C+L +L V W+R Sbjct: 188 PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR 224
>FTHS_LACLA (Q9CH07) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 555 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Frame = -2 Query: 377 KGYLNLSRHAVSVQLCGTLEVVIEANSQSGTIKGEVSIKAQ-------NCNITQDVCQLG 219 KG+ NL RH ++Q G L V++ N + K E+S ++TQ + G Sbjct: 355 KGFANLERHIKNMQSYG-LPVIVAINEFASDTKSEISALKDLTEALGVPVSLTQVFAKGG 413 Query: 218 DSVLEITVAWSRLVQDK 168 + L++ S ++Q+K Sbjct: 414 EGGLDLAEKLSGMLQEK 430
>DPOL_HBVWO (P17395) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 843 Score = 30.0 bits (66), Expect = 7.0 Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Frame = +2 Query: 38 AVCTNSTIHNTGNTKYSYTILNT--GNTNSLSSIKLPHFPPSRS 163 A ++S +H + K +Y+++ T G+++S +++L HFPP+ S Sbjct: 269 ASSSSSCLHQSAVRKAAYSLIPTSKGHSSSGHAVELHHFPPNSS 312
>LICH_MOUSE (Q9Z0M5) Lysosomal acid lipase/cholesteryl ester hydrolase| precursor (EC 3.1.1.13) (LAL) (Acid cholesteryl ester hydrolase) (Sterol esterase) (Lipase A) (Cholesteryl esterase) Length = 397 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -3 Query: 646 GYVLYIPLLPEAYAQWC*AQRSFVNQSRLLSWVSVSVFPKRHRVFLKTAAELFASLC 476 G +L + LP+ + Q+ F+ QS +L W+S+ V H + + A +F LC Sbjct: 209 GPLLQLGRLPDPLLKDMFGQKQFLPQSAMLKWLSIHVC--THVIMKELCANVFFLLC 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,586,766 Number of Sequences: 219361 Number of extensions: 2073973 Number of successful extensions: 5245 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5245 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
