| Clone Name | rbags14p19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475119.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2175 Score = 153 bits (77), Expect = 9e-34 Identities = 183/217 (84%), Gaps = 1/217 (0%) Strand = Plus / Minus Query: 471 tcggcccaaaacatcactccacccctaaaagaagggaatcccattcccataatggatgct 530 |||||||| ||||||||||| ||||| | |||||||| ||| | ||||||||||||||| Sbjct: 2024 tcggcccagaacatcactccgcccctgtaggaagggaagcccctccccataatggatgct 1965 Query: 531 acatcgaggtcagatgctttcaaagcaattccctcatcaagcactcggcaggcctcattc 590 ||||| || ||||||||||||| ||||| ||||| ||||||| ||| |||||||||||| Sbjct: 1964 acatcaagatcagatgctttcatagcaaccccctcgtcaagcagtcgacaggcctcattc 1905 Query: 591 accacaggaaagaagaccatctctacaatgtccttgtctgttaatttcagcagcttagga 650 ||||| || |||| | |||||| || || || | |||||||||||| ||||||||||| Sbjct: 1904 accacggggaagagcatcatctccacgatttcatcatctgttaatttcggcagcttagga 1845 Query: 651 tcttgtgcaacacctggccatgtttcttgaattctca 687 |||||| ||| | || |||||| ||||||| |||||| Sbjct: 1844 tcttgtacaata-ctagccatgcttcttgatttctca 1809
>dbj|AK100115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006O04, full insert sequence Length = 2501 Score = 153 bits (77), Expect = 9e-34 Identities = 183/217 (84%), Gaps = 1/217 (0%) Strand = Plus / Minus Query: 471 tcggcccaaaacatcactccacccctaaaagaagggaatcccattcccataatggatgct 530 |||||||| ||||||||||| ||||| | |||||||| ||| | ||||||||||||||| Sbjct: 2128 tcggcccagaacatcactccgcccctgtaggaagggaagcccctccccataatggatgct 2069 Query: 531 acatcgaggtcagatgctttcaaagcaattccctcatcaagcactcggcaggcctcattc 590 ||||| || ||||||||||||| ||||| ||||| ||||||| ||| |||||||||||| Sbjct: 2068 acatcaagatcagatgctttcatagcaaccccctcgtcaagcagtcgacaggcctcattc 2009 Query: 591 accacaggaaagaagaccatctctacaatgtccttgtctgttaatttcagcagcttagga 650 ||||| || |||| | |||||| || || || | |||||||||||| ||||||||||| Sbjct: 2008 accacggggaagagcatcatctccacgatttcatcatctgttaatttcggcagcttagga 1949 Query: 651 tcttgtgcaacacctggccatgtttcttgaattctca 687 |||||| ||| | || |||||| ||||||| |||||| Sbjct: 1948 tcttgtacaata-ctagccatgcttcttgatttctca 1913
>gb|AC135929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692D12, complete sequence Length = 164064 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Minus Query: 501 gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 560 |||||||| ||| | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct: 95579 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 95520 Query: 561 ccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctctacaatg 620 ||||| ||||||| ||| ||||||||||||||||| || |||| | |||||| || || Sbjct: 95519 ccctcgtcaagcagtcgacaggcctcattcaccacggggaagagcatcatctccacgatt 95460 Query: 621 tccttgtctgttaatttcagcagct 645 || | |||||||||||| |||||| Sbjct: 95459 tcatcatctgttaatttcggcagct 95435
>gb|AC134348.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0530H10, complete sequence Length = 148373 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Minus Query: 501 gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 560 |||||||| ||| | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct: 144811 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 144752 Query: 561 ccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctctacaatg 620 ||||| ||||||| ||| ||||||||||||||||| || |||| | |||||| || || Sbjct: 144751 ccctcgtcaagcagtcgacaggcctcattcaccacggggaagagcatcatctccacgatt 144692 Query: 621 tccttgtctgttaatttcagcagct 645 || | |||||||||||| |||||| Sbjct: 144691 tcatcatctgttaatttcggcagct 144667
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 2e-19 Identities = 122/145 (84%) Strand = Plus / Minus Query: 501 gaagggaatcccattcccataatggatgctacatcgaggtcagatgctttcaaagcaatt 560 |||||||| ||| | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct: 17151444 gaagggaagcccctccccataatggatgctacatcaagatcagatgctttcatagcaacc 17151385 Query: 561 ccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctctacaatg 620 ||||| ||||||| ||| ||||||||||||||||| || |||| | |||||| || || Sbjct: 17151384 ccctcgtcaagcagtcgacaggcctcattcaccacggggaagagcatcatctccacgatt 17151325 Query: 621 tccttgtctgttaatttcagcagct 645 || | |||||||||||| |||||| Sbjct: 17151324 tcatcatctgttaatttcggcagct 17151300
>ref|NM_184007.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2184 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 1949 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 1890 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 1889 actatgtcctt 1879
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 13875199 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 13875140 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 13875139 actatgtcctt 13875129
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 35501 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 35442 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 35441 actatgtcctt 35431
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 112602 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 112543 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 112542 actatgtcctt 112532
>dbj|AK100444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090D07, full insert sequence Length = 2677 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 2165 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 2106 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 2105 actatgtcctt 2095
>dbj|AK099063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157A11, full insert sequence Length = 941 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 391 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 332 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 331 actatgtcctt 321
>dbj|AK062168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B11, full insert sequence Length = 1148 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 555 gcaattccctcatcaagcactcggcaggcctcattcaccacaggaaagaagaccatctct 614 ||||||||||||||||| || ||||| |||||||| | || || |||||||||||||| Sbjct: 633 gcaattccctcatcaagaacacggcaagcctcatttatgactgggaagaagaccatctca 574 Query: 615 acaatgtcctt 625 || |||||||| Sbjct: 573 actatgtcctt 563
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 tacatctaatatatgattgtat 248 |||||||||||||||||||||| Sbjct: 14301 tacatctaatatatgattgtat 14322
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tacatctaatatatgattgtat 248 |||||||||||||||||||||| Sbjct: 36296 tacatctaatatatgattgtat 36275
>emb|AL161793.9| Human DNA sequence from clone RP11-23I7 on chromosome 1q32.1-32.3 Contains the 5' end of the LRRN5 gene for leucine rich repeat neuronal 5 and a novel gene, complete sequence Length = 162345 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 gcccaaaacatcactccacccc 495 |||||||||||||||||||||| Sbjct: 144821 gcccaaaacatcactccacccc 144842
>gb|AC096675.2| Homo sapiens chromosome 1 clone RP11-80N9, complete sequence Length = 170467 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 gcccaaaacatcactccacccc 495 |||||||||||||||||||||| Sbjct: 47199 gcccaaaacatcactccacccc 47220
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tacatctaatatatgattgtat 248 |||||||||||||||||||||| Sbjct: 14812759 tacatctaatatatgattgtat 14812738
>gb|AC098817.3| Homo sapiens BAC clone RP11-92A1 from 2, complete sequence Length = 154436 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 612 tctacaatgtccttgtctgttaattt 637 ||||||||||||||||| |||||||| Sbjct: 48770 tctacaatgtccttgtcagttaattt 48795
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tacatctaatatatgattgtat 248 |||||||||||||||||||||| Sbjct: 14893197 tacatctaatatatgattgtat 14893176
>emb|AL121787.22|HSDJ512E2 Human DNA sequence from clone RP3-512E2 on chromosome 6q14.3-16.1 Contains part of the BACH2 gene for BTB and CNC homology 1 basic leucine zipper transcription factor 2 and a novel gene, complete sequence Length = 106556 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 616 caatgtccttgtctgttaatt 636 ||||||||||||||||||||| Sbjct: 30445 caatgtccttgtctgttaatt 30425
>dbj|AB033763.2| Staphylococcus aureus DNA, type-I staphylococccal cassette chromosome mec, strain:NCTC10442 Length = 39332 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 attacgtacatctaatatatg 241 ||||||||||||||||||||| Sbjct: 19395 attacgtacatctaatatatg 19375
>gb|AC160836.12| Medicago truncatula clone mth2-115l23, complete sequence Length = 116158 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 488 tccacccctaaaagaagggaa 508 ||||||||||||||||||||| Sbjct: 62091 tccacccctaaaagaagggaa 62111
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 attacgtacatctaatatatg 241 ||||||||||||||||||||| Sbjct: 53644 attacgtacatctaatatatg 53664
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 tgaagaactctccataatcct 423 ||||||||||||||||||||| Sbjct: 15929931 tgaagaactctccataatcct 15929951
>gb|AC016776.6| Homo sapiens BAC clone RP11-574K22 from 2, complete sequence Length = 197425 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tttgctgtgcactttattacg 226 ||||||||||||||||||||| Sbjct: 157085 tttgctgtgcactttattacg 157065
>dbj|AP005641.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13 Length = 179669 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 tgaagaactctccataatcct 423 ||||||||||||||||||||| Sbjct: 169445 tgaagaactctccataatcct 169465
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 tgaagaactctccataatcct 423 ||||||||||||||||||||| Sbjct: 11333 tgaagaactctccataatcct 11353
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 attacgtacatctaatatatg 241 ||||||||||||||||||||| Sbjct: 2493169 attacgtacatctaatatatg 2493149
>gb|AY109470.1| Zea mays CL2102_5 mRNA sequence Length = 1160 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 561 ccctcatcaagcactcggcaggcctcatt 589 ||||||||||| ||||||||||| ||||| Sbjct: 371 ccctcatcaaggactcggcaggcttcatt 399
>gb|AC165322.12| Mus musculus chromosome 1, clone RP23-127J15, complete sequence Length = 185278 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 618 atgtccttgtctgttaatttc 638 ||||||||||||||||||||| Sbjct: 98267 atgtccttgtctgttaatttc 98247
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 attacgtacatctaatatatg 241 ||||||||||||||||||||| Sbjct: 124894 attacgtacatctaatatatg 124914
>gb|AC119279.8| Mus musculus chromosome 8, clone RP24-460J16, complete sequence Length = 139356 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctggacaaggcagaacacgg 306 |||||||||||||||||||| Sbjct: 111918 ctggacaaggcagaacacgg 111937
>gb|AE010310.1| Methanopyrus kandleri AV19 section 9 of 157 of the complete genome Length = 11629 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 ttcacagggtttgaagaactctcc 415 ||||||| |||||||||||||||| Sbjct: 381 ttcacagagtttgaagaactctcc 358
>gb|AC113041.9| Mus musculus chromosome 8, clone RP23-240K12, complete sequence Length = 175827 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ctggacaaggcagaacacgg 306 |||||||||||||||||||| Sbjct: 18944 ctggacaaggcagaacacgg 18963
>gb|AY380304.1|AY380304S1 Drosophila willistoni wingless (wg) gene, intron 1 Length = 2210 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aagaaaagaaaaaagccaca 168 |||||||||||||||||||| Sbjct: 382 aagaaaagaaaaaagccaca 401
>gb|AC121481.6| Rattus norvegicus NOVECTOR CH230-218J9 (Children's Hospital Oakland Research Institute) complete sequence Length = 236244 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cgccatcggcagccaaggatgtgc 366 |||||||| ||||||||||||||| Sbjct: 25476 cgccatcgccagccaaggatgtgc 25499
>gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome 12, complete sequence Length = 216095 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 196852 agaagaaaagaaaaaagcca 196833
>gb|AC140426.3| Mus musculus BAC clone RP24-98A17 from chromosome 14, complete sequence Length = 189282 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cagggtttgaagaactctcc 415 |||||||||||||||||||| Sbjct: 145547 cagggtttgaagaactctcc 145528
>gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, complete sequence Length = 207556 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 cagcagtttcagaagaaaagaaaa 160 ||||||||||||| |||||||||| Sbjct: 37841 cagcagtttcagaggaaaagaaaa 37818
>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence Length = 212109 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 610 tctctacaatgtccttgtct 629 |||||||||||||||||||| Sbjct: 61524 tctctacaatgtccttgtct 61543
>gb|AC165959.5| Mus musculus BAC clone RP23-390B24 from chromosome 7, complete sequence Length = 217760 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 188359 tttcagaagaaaagaaaaaa 188378
>emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chromosome 7, complete sequence Length = 178646 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ttcagaagaaaagaaaaaag 163 |||||||||||||||||||| Sbjct: 148239 ttcagaagaaaagaaaaaag 148220
>emb|CR847845.5| Zebrafish DNA sequence from clone DKEY-124I15 in linkage group 14, complete sequence Length = 26956 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aagaaaaaagccacacccac 173 |||||||||||||||||||| Sbjct: 21578 aagaaaaaagccacacccac 21559
>gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosome 7, complete sequence Length = 185617 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 180685 tttcagaagaaaagaaaaaa 180666
>gb|AC123051.4| Mus musculus BAC clone RP24-366E4 from chromosome 6, complete sequence Length = 143909 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 cagcagtttcagaagaaaagaaaa 160 ||||||||||||| |||||||||| Sbjct: 110521 cagcagtttcagaggaaaagaaaa 110544
>gb|AC125128.3| Mus musculus BAC clone RP24-289N17 from chromosome 14, complete sequence Length = 180645 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cagggtttgaagaactctcc 415 |||||||||||||||||||| Sbjct: 22878 cagggtttgaagaactctcc 22859
>gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosome 12, complete sequence Length = 176782 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 112588 agaagaaaagaaaaaagcca 112607
>gb|AC124723.4| Mus musculus BAC clone RP23-396P3 from chromosome 14, complete sequence Length = 187353 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 66742 agaagaaaagaaaaaagcca 66761
>gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome 17, complete sequence Length = 126106 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cacacccaccaacaatcaaa 184 |||||||||||||||||||| Sbjct: 93690 cacacccaccaacaatcaaa 93709
>ref|XM_650434.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (27.t00034) partial mRNA Length = 2553 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tcagaagaaaagaaaaaagc 164 |||||||||||||||||||| Sbjct: 154 tcagaagaaaagaaaaaagc 173
>gb|AC162035.5| Mus musculus chromosome 18, clone RP23-434N7, complete sequence Length = 200472 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 97478 tttcagaagaaaagaaaaaa 97497
>emb|AL160283.10| Human DNA sequence from clone RP11-317F9 on chromosome 1q21.1-23.3 Contains the OR6Y1 gene for olfactory receptor, family 6, subfamily Y, member 1, the OR6P1 gene for olfactory receptor, family 6, subfamily P, member 1 and the OR10X1 gene for olfactory receptor, family 10, subfamily X, member 1, complete sequence Length = 38452 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 tcagaagaaaagaaaaaagccacaccca 172 ||||||||||| ||||||||| |||||| Sbjct: 3947 tcagaagaaaaaaaaaaagcctcaccca 3920
>gb|AC095281.6| Rattus norvegicus 4 BAC CH230-10M16 (Children's Hospital Oakland Research Institute) complete sequence Length = 228330 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 tcagaagaaaagaaaaaagccaca 168 |||||| ||||||||||||||||| Sbjct: 188284 tcagaaaaaaagaaaaaagccaca 188307
>emb|AJ400878.1|MMU400878 Mus musculus Ascl3 gene, Cegp1 gene, D7H11orf14 gene, D7H11orf15 gene, D7H11orf16 gene and C11orf17 gene Length = 234169 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 21288 tttcagaagaaaagaaaaaa 21269
>emb|BX649520.20| Zebrafish DNA sequence from clone DKEY-174E3 in linkage group 13, complete sequence Length = 219709 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 202 catttttgctgtgcactttattacgtacatct 233 ||||||||||| |||||||||| |||||||| Sbjct: 212164 catttttgctggccactttattaggtacatct 212195
>emb|AL645526.14| Mouse DNA sequence from clone RP23-60F20 on chromosome 11 Contains the 5' end of the Pemt gene for phosphatidylethanolamine N-methyltransferase, the 5' end of the Rai1 gene for retinoic acid induced 1, a novel gene (4930412M03Rik) and three CpG islands, complete sequence Length = 143708 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gaaccattccagctcctgtc 270 |||||||||||||||||||| Sbjct: 131397 gaaccattccagctcctgtc 131378
>emb|CR749725.1| Homo sapiens genomic DNA; cDNA DKFZp434E1235 (from clone DKFZp434E1235) Length = 872 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 614 tacaatgtccttgtctgttaattt 637 |||||||||||| ||||||||||| Sbjct: 110 tacaatgtccttatctgttaattt 87
>gb|AC129907.3| Homo sapiens chromosome 15, clone CTD-2280M1, complete sequence Length = 127340 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 caggcctcattcaccacagg 598 |||||||||||||||||||| Sbjct: 8415 caggcctcattcaccacagg 8396
>gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, complete sequence Length = 97882 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 caccaacaatcaaaccaacc 190 |||||||||||||||||||| Sbjct: 59966 caccaacaatcaaaccaacc 59947
>gb|AC090506.7| Homo sapiens chromosome 18, clone RP11-675P14, complete sequence Length = 188609 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gcataaaatgggtacacgat 325 |||||||||||||||||||| Sbjct: 147426 gcataaaatgggtacacgat 147445
>gb|BC105417.1| Bos taurus cDNA clone MGC:128482 IMAGE:7984532, complete cds Length = 3021 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ttcagaagaaaagaaaaaag 163 |||||||||||||||||||| Sbjct: 702 ttcagaagaaaagaaaaaag 721
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete sequence Length = 97814 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 40813 tttcagaagaaaagaaaaaa 40794
>gb|AC064800.8| Homo sapiens chromosome 18, clone CTD-2001I24, complete sequence Length = 131409 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 caccaacaatcaaaccaacc 190 |||||||||||||||||||| Sbjct: 3754 caccaacaatcaaaccaacc 3735
>gb|AC140725.3| Homo sapiens chromosome 15, clone, complete sequence Length = 181240 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 caggcctcattcaccacagg 598 |||||||||||||||||||| Sbjct: 139986 caggcctcattcaccacagg 140005
>emb|AJ550456.1|HPY550456 Helicobacter pylori partial plg-bp gene for plasminogen binding protein Length = 1344 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 1218 agaagaaaagaaaaaagcca 1237
>gb|AC104842.4| Homo sapiens BAC clone RP11-544D5 from 2, complete sequence Length = 150622 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gcagtttcagaagaaaagaa 158 |||||||||||||||||||| Sbjct: 89866 gcagtttcagaagaaaagaa 89885
>gb|AF281267.1|AF281267 Euphausia krohni NADH dehydrogenase subunit 1 (ND1) gene, partial cds; mitochondrial gene for mitochondrial product Length = 387 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaaaaagccacacccaccaa 176 |||||||||||||||||||| Sbjct: 56 aaaaaagccacacccaccaa 37
>gb|AC153657.4| Mus musculus BAC clone RP23-324B3 from chromosome 12, complete sequence Length = 208058 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 14100 agaagaaaagaaaaaagcca 14081
>gb|AC011005.7|AC011005 Homo sapiens chromosome 7 clone RP11-286H14, complete sequence Length = 217615 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 661 cacctggccatgtttcttga 680 |||||||||||||||||||| Sbjct: 207305 cacctggccatgtttcttga 207324
>gb|AC083866.2|AC083866 Homo sapiens chromosome 7 clone RP11-702D16, complete sequence Length = 170528 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 661 cacctggccatgtttcttga 680 |||||||||||||||||||| Sbjct: 130233 cacctggccatgtttcttga 130252
>gb|AF130241.1|AF130241 Oreoscoptes montanus cytochrome b gene, partial cds; mitochondrial gene for mitochondrial product Length = 433 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agcaacacattacacagcag 139 |||||||||||||||||||| Sbjct: 58 agcaacacattacacagcag 77
>gb|AC105448.5| Homo sapiens BAC clone RP11-1197E19 from 4, complete sequence Length = 135594 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gaagaaaagaaaaaagccac 167 |||||||||||||||||||| Sbjct: 7650 gaagaaaagaaaaaagccac 7669
>gb|AC107977.13| Homo sapiens chromosome 15, clone CTD-2611K5, complete sequence Length = 152619 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 caggcctcattcaccacagg 598 |||||||||||||||||||| Sbjct: 52660 caggcctcattcaccacagg 52679
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete sequence Length = 227682 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gaaccattccagctcctgtc 270 |||||||||||||||||||| Sbjct: 143226 gaaccattccagctcctgtc 143245
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 agtttcagaagaaaagaaaaaagc 164 |||||||||||||| ||||||||| Sbjct: 2181116 agtttcagaagaaatgaaaaaagc 2181093
>gb|AC102861.12| Mus musculus chromosome 7, clone RP24-532A16, complete sequence Length = 162039 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tctctacaatgtccttgtct 629 |||||||||||||||||||| Sbjct: 9219 tctctacaatgtccttgtct 9200
>emb|AL391152.3|CNS06C7Y Human chromosome 14 DNA sequence BAC R-613G13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189385 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 aatgtccttgtctgttaatt 636 |||||||||||||||||||| Sbjct: 185646 aatgtccttgtctgttaatt 185627
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 876700 agaagaaaagaaaaaagcca 876681 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 497592 agaagaaaagaaaaaagcca 497611
>emb|AL137100.4|CNS01DWC Human chromosome 14 DNA sequence BAC R-108M12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166486 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 aatgtccttgtctgttaatt 636 |||||||||||||||||||| Sbjct: 108863 aatgtccttgtctgttaatt 108882
>gb|U90647.1|FSU90647 Francolinus sephaena cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 660 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agcaacacattacacagcag 139 |||||||||||||||||||| Sbjct: 27 agcaacacattacacagcag 46
>dbj|AP001524.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-702P11, complete sequence Length = 150847 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 620 gtccttgtctgttaatttca 639 |||||||||||||||||||| Sbjct: 21989 gtccttgtctgttaatttca 21970
>dbj|AP000916.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-728D14, complete sequence Length = 192926 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 620 gtccttgtctgttaatttca 639 |||||||||||||||||||| Sbjct: 132474 gtccttgtctgttaatttca 132455
>gb|AE000511.1| Helicobacter pylori 26695, complete genome Length = 1667867 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 915339 agaagaaaagaaaaaagcca 915320 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 agaagaaaagaaaaaagcca 166 |||||||||||||||||||| Sbjct: 535080 agaagaaaagaaaaaagcca 535099
>gb|AF014731.1|AF014731 Oryctolagus cuniculus clone N202 immunoglobulin mu heavy chain VDJ region (IGHM) mRNA, partial sequence Length = 317 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 244 tgtatccgaaccattccagctcct 267 ||||||||| |||||||||||||| Sbjct: 148 tgtatccgatccattccagctcct 125
>emb|AL929344.8| Zebrafish DNA sequence from clone DKEYP-115D2, complete sequence Length = 190898 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 aaaaaagccacacccaccaacaat 180 ||||||||||||||| |||||||| Sbjct: 159952 aaaaaagccacaccctccaacaat 159975
>gb|U15206.1|EM15206 Epimachus meyeri mitochondrion cytochrome b gene, complete cds Length = 1143 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 agcaacacattacacagcag 139 |||||||||||||||||||| Sbjct: 156 agcaacacattacacagcag 175
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 13464 tttcagaagaaaagaaaaaa 13445
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 101067 tttcagaagaaaagaaaaaa 101048
>emb|AL772264.8| Mouse DNA sequence from clone RP23-15I21 on chromosome 2, complete sequence Length = 189540 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 aagaccacagcaacacatta 131 |||||||||||||||||||| Sbjct: 125247 aagaccacagcaacacatta 125266
>gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence Length = 222981 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tttcagaagaaaagaaaaaa 162 |||||||||||||||||||| Sbjct: 26069 tttcagaagaaaagaaaaaa 26050
>dbj|AB012938.1| Antirrhinum majus transposon Tam356 DNA, complete sequence Length = 1463 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caccaacaatcaaaccaacc 190 |||||||||||||||||||| Sbjct: 221 caccaacaatcaaaccaacc 240
>dbj|AP002533.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 2/4 Length = 300000 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 tcagaagaaaagaaaaaagccacaccca 172 ||||||||||| ||||||||| |||||| Sbjct: 76284 tcagaagaaaaaaaaaaagcctcaccca 76257
>dbj|AB045359.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:456n8, complete sequence Length = 161318 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 tcagaagaaaagaaaaaagccacaccca 172 ||||||||||| ||||||||| |||||| Sbjct: 128807 tcagaagaaaaaaaaaaagcctcaccca 128780 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,684,220 Number of Sequences: 3902068 Number of extensions: 7684220 Number of successful extensions: 201306 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 200641 Number of HSP's gapped (non-prelim): 660 length of query: 687 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 664 effective length of database: 17,143,297,704 effective search space: 11383149675456 effective search space used: 11383149675456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)