ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14p18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105876.1| Zea mays PCO109868 mRNA sequence 357 3e-95
2ref|XM_483639.1| Oryza sativa (japonica cultivar-group), mRNA 242 1e-60
3dbj|AK120698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
4gb|AY536125.1| Zea mays MEG5 (meg5) mRNA, complete cds 190 4e-45
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
6dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
7dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
8ref|XM_550578.1| Oryza sativa (japonica cultivar-group), mRNA 72 3e-09
9gb|AY105296.1| Zea mays PCO103628 mRNA sequence 72 3e-09
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13ref|NM_202146.1| Arabidopsis thaliana nucleic acid binding AT1G2... 42 2.4
14ref|NM_106345.2| Arabidopsis thaliana nucleic acid binding AT1G7... 42 2.4
15gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 geno... 42 2.4
16dbj|AK004455.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 42 2.4
17gb|AC036104.3|F16F4 Sequence of BAC F16F4 from Arabidopsis thali... 42 2.4
18dbj|AK117533.1| Arabidopsis thaliana At1g76940 mRNA for unknown ... 42 2.4
19dbj|AK073499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
20dbj|AK064353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
21gb|AC087229.27| Mus musculus strain C57BL/6J chromosome 1 clone ... 42 2.4
22gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O1... 40 9.4
23gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 40 9.4
24gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8... 40 9.4
25ref|XM_818755.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 h... 40 9.4
26gb|AC126121.2| Homo sapiens chromosome 3 clone RP11-719N22, comp... 40 9.4
27gb|AC110612.3| Homo sapiens BAC clone RP11-416B16 from 4, comple... 40 9.4
28gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4... 40 9.4
29dbj|AK110546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4 
>gb|AY105876.1| Zea mays PCO109868 mRNA sequence
          Length = 789

 Score =  357 bits (180), Expect = 3e-95
 Identities = 346/400 (86%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 278 gatcgctcgtataaacggtaggttcggcaaccacctgactcgcacgacttaacgcctacc 337
           ||||||||||||||||| ||||||||||||||||  |   |||||| |||||||||||||
Sbjct: 460 gatcgctcgtataaacgataggttcggcaaccacgaggtccgcacgtcttaacgcctacc 401

                                                                       
Query: 338 acgaggtccaccagctgacctcggaccaggaaagcgcgagaattgcagccttaaatgggc 397
            ||||| |||||||||||||| ||||| |||||||| ||||||||||| |  ||||||||
Sbjct: 400 gcgaggcccaccagctgaccttggaccgggaaagcgtgagaattgcagacgcaaatgggc 341

                                                                       
Query: 398 tgattcacgatcgtgttcgtcaaacttataaccttgcagagcttcaagtgcaatagtagc 457
           ||| ||||| |||||||||||||||||||||||||| |  ||||| || ||||| |||||
Sbjct: 340 tgaatcacgctcgtgttcgtcaaacttataaccttgtaatgcttccagagcaattgtagc 281

                                                                       
Query: 458 ttgggcagggctatcaaaatcaacgaaacacaggacatgaggatctccaccaggatgtct 517
            || |||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||
Sbjct: 280 ctgagcagggttgtcaaaatcaacgaaacacaacacatgtggatctccaccaggatgtct 221

                                                                       
Query: 518 tgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatatatgtga 577
            ||||| ||||||||||| |  |||||||||||||||||||| ||||| |||||||||||
Sbjct: 220 ggactccttgttgacaagacgaacttcacgaaaaccaacaaatgggcgaaatatatgtga 161

                                                                       
Query: 578 aacctcccttgcgtgtgcagtttgcaggcagaccttcaatatacaaagtgttggatgcat 637
           |||||||| | ||||||||||||||||| |  || |||||||| | |||| | |||||||
Sbjct: 160 aacctcccgt-cgtgtgcagtttgcaggtaagccctcaatatatagagtgcttgatgcat 102

                                                   
Query: 638 ccgggggaagagggggctcgggtcttgcaccataccccat 677
           | || |||||||| ||||| |||||  ||||||| |||||
Sbjct: 101 caggcggaagaggtggctcaggtctgccaccatatcccat 62



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 179 ttattgcatcgtccttttcacgctttcgcaacatgggctgacgaacccta 228
           ||||||||| |||| |||||||| ||| | | ||| ||||||||||||||
Sbjct: 565 ttattgcattgtccctttcacgcattcacgaaatgagctgacgaacccta 516
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>ref|XM_483639.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1825

 Score =  242 bits (122), Expect = 1e-60
 Identities = 219/250 (87%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 428 accttgcagagcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaaca 487
           ||||||||  |||||||| |||| ||||||||| |||||| ||||||||||||| || ||
Sbjct: 851 accttgcaatgcttcaagagcaagagtagcttgcgcagggttatcaaaatcaacaaagca 792

                                                                       
Query: 488 caggacatgaggatctccaccaggatgtcttgactctttgttgacaagcctcacttcacg 547
           || ||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 791 caagacatgaggatctcctccagggtgtcttgactccttgttgacaagtctgacttcacg 732

                                                                       
Query: 548 aaaaccaacaaaagggcggaatatatgtgaaacctcccttgcgtgtgcagtttgcaggca 607
           |||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 731 aaaacctacaaaagggcgaaatatatgtgacacctccctt-cgtgtgcagtttgcaggca 673

                                                                       
Query: 608 gaccttcaatatacaaagtgttggatgcatccgggggaagagggggctcgggtcttgcac 667
           | |||||||  |||| |||| | |||||||| |  || ||||| |||||||| |||||||
Sbjct: 672 ggccttcaacgtacagagtgcttgatgcatctgctgggagaggaggctcgggccttgcac 613

                     
Query: 668 cataccccat 677
           |||| |||||
Sbjct: 612 catagcccat 603



 Score =  170 bits (86), Expect = 4e-39
 Identities = 110/118 (93%)
 Strand = Plus / Minus

                                                                        
Query: 314  gactcgcacgacttaacgcctaccacgaggtccaccagctgacctcggaccaggaaagcg 373
            ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1443 gactcgcgcgacttaacgcctaccacgaggcccgccagctgacctcggaccaggaaagcg 1384

                                                                      
Query: 374  cgagaattgcagccttaaatgggctgattcacgatcgtgttcgtcaaacttataacct 431
             ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1383 tgagaactgcagccgcaaatgggctgaatcacgatcgtgttcgtcaaacttataacct 1326
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>dbj|AK120698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170L18, full
           insert sequence
          Length = 1825

 Score =  242 bits (122), Expect = 1e-60
 Identities = 219/250 (87%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 428 accttgcagagcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaaca 487
           ||||||||  |||||||| |||| ||||||||| |||||| ||||||||||||| || ||
Sbjct: 851 accttgcaatgcttcaagagcaagagtagcttgcgcagggttatcaaaatcaacaaagca 792

                                                                       
Query: 488 caggacatgaggatctccaccaggatgtcttgactctttgttgacaagcctcacttcacg 547
           || ||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||
Sbjct: 791 caagacatgaggatctcctccagggtgtcttgactccttgttgacaagtctgacttcacg 732

                                                                       
Query: 548 aaaaccaacaaaagggcggaatatatgtgaaacctcccttgcgtgtgcagtttgcaggca 607
           |||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 731 aaaacctacaaaagggcgaaatatatgtgacacctccctt-cgtgtgcagtttgcaggca 673

                                                                       
Query: 608 gaccttcaatatacaaagtgttggatgcatccgggggaagagggggctcgggtcttgcac 667
           | |||||||  |||| |||| | |||||||| |  || ||||| |||||||| |||||||
Sbjct: 672 ggccttcaacgtacagagtgcttgatgcatctgctgggagaggaggctcgggccttgcac 613

                     
Query: 668 cataccccat 677
           |||| |||||
Sbjct: 612 catagcccat 603



 Score =  170 bits (86), Expect = 4e-39
 Identities = 110/118 (93%)
 Strand = Plus / Minus

                                                                        
Query: 314  gactcgcacgacttaacgcctaccacgaggtccaccagctgacctcggaccaggaaagcg 373
            ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1443 gactcgcgcgacttaacgcctaccacgaggcccgccagctgacctcggaccaggaaagcg 1384

                                                                      
Query: 374  cgagaattgcagccttaaatgggctgattcacgatcgtgttcgtcaaacttataacct 431
             ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1383 tgagaactgcagccgcaaatgggctgaatcacgatcgtgttcgtcaaacttataacct 1326
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>gb|AY536125.1| Zea mays MEG5 (meg5) mRNA, complete cds
          Length = 621

 Score =  190 bits (96), Expect = 4e-45
 Identities = 205/240 (85%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 438 gcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaacacaggacatga 497
           ||||| || ||||| ||||| || |||||| | |||||||| ||||||||||  ||||| 
Sbjct: 309 gcttccagagcaattgtagcctgagcagggttgtcaaaatcgacgaaacacaacacatgt 250

                                                                       
Query: 498 ggatctccaccaggatgtcttgactctttgttgacaagcctcacttcacgaaaaccaaca 557
           |||||||||||||||||||| ||||| ||||||||||| |  ||||||||||||||||||
Sbjct: 249 ggatctccaccaggatgtctggactccttgttgacaagacgaacttcacgaaaaccaaca 190

                                                                       
Query: 558 aaagggcggaatatatgtgaaacctcccttgcgtgtgcagtttgcaggcagaccttcaat 617
           || ||||| ||||||||||||||||||| | ||||||||||||||||| |  || |||||
Sbjct: 189 aatgggcgaaatatatgtgaaacctcccgt-cgtgtgcagtttgcaggtaagccctcaat 131

                                                                       
Query: 618 atacaaagtgttggatgcatccgggggaagagggggctcgggtcttgcaccataccccat 677
           ||| | |||| | |||||||| || |||||||| ||||| |||||  ||||||| |||||
Sbjct: 130 atatagagtgcttgatgcatcaggcggaagaggtggctcaggtctgccaccatatcccat 71
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  170 bits (86), Expect = 4e-39
 Identities = 110/118 (93%)
 Strand = Plus / Minus

                                                                            
Query: 314      gactcgcacgacttaacgcctaccacgaggtccaccagctgacctcggaccaggaaagcg 373
                ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 27393453 gactcgcgcgacttaacgcctaccacgaggcccgccagctgacctcggaccaggaaagcg 27393394

                                                                          
Query: 374      cgagaattgcagccttaaatgggctgattcacgatcgtgttcgtcaaacttataacct 431
                 ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 27393393 tgagaactgcagccgcaaatgggctgaatcacgatcgtgttcgtcaaacttataacct 27393336



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                            
Query: 428      accttgcagagcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaaca 487
                ||||||||  |||||||| |||| ||||||||| |||||| ||||||||||||| || ||
Sbjct: 27392861 accttgcaatgcttcaagagcaagagtagcttgcgcagggttatcaaaatcaacaaagca 27392802

                                        
Query: 488      caggacatgaggatctccaccagg 511
                || ||||||||||||||| |||||
Sbjct: 27392801 caagacatgaggatctcctccagg 27392778



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 513      tgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatata 572
                ||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct: 27392701 tgtcttgactccttgttgacaagtctgacttcacgaaaacctacaaaagggcgaaatata 27392642

                 
Query: 573      t 573
                |
Sbjct: 27392641 t 27392641



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 89/104 (85%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                            
Query: 574      gtgaaacctcccttgcgtgtgcagtttgcaggcagaccttcaatatacaaagtgttggat 633
                |||| ||||||||| |||||||||||||||||||| |||||||  |||| |||| | |||
Sbjct: 27392455 gtgacacctccctt-cgtgtgcagtttgcaggcaggccttcaacgtacagagtgcttgat 27392397

                                                            
Query: 634      gcatccgggggaagagggggctcgggtcttgcaccataccccat 677
                ||||| |  || ||||| |||||||| ||||||||||| |||||
Sbjct: 27392396 gcatctgctgggagaggaggctcgggccttgcaccatagcccat 27392353
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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score =  170 bits (86), Expect = 4e-39
 Identities = 110/118 (93%)
 Strand = Plus / Minus

                                                                         
Query: 314   gactcgcacgacttaacgcctaccacgaggtccaccagctgacctcggaccaggaaagcg 373
             ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 20248 gactcgcgcgacttaacgcctaccacgaggcccgccagctgacctcggaccaggaaagcg 20189

                                                                       
Query: 374   cgagaattgcagccttaaatgggctgattcacgatcgtgttcgtcaaacttataacct 431
              ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 20188 tgagaactgcagccgcaaatgggctgaatcacgatcgtgttcgtcaaacttataacct 20131



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                         
Query: 428   accttgcagagcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaaca 487
             ||||||||  |||||||| |||| ||||||||| |||||| ||||||||||||| || ||
Sbjct: 19656 accttgcaatgcttcaagagcaagagtagcttgcgcagggttatcaaaatcaacaaagca 19597

                                     
Query: 488   caggacatgaggatctccaccagg 511
             || ||||||||||||||| |||||
Sbjct: 19596 caagacatgaggatctcctccagg 19573



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 513   tgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatata 572
             ||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct: 19496 tgtcttgactccttgttgacaagtctgacttcacgaaaacctacaaaagggcgaaatata 19437

              
Query: 573   t 573
             |
Sbjct: 19436 t 19436



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 89/104 (85%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                         
Query: 574   gtgaaacctcccttgcgtgtgcagtttgcaggcagaccttcaatatacaaagtgttggat 633
             |||| ||||||||| |||||||||||||||||||| |||||||  |||| |||| | |||
Sbjct: 19250 gtgacacctccctt-cgtgtgcagtttgcaggcaggccttcaacgtacagagtgcttgat 19192

                                                         
Query: 634   gcatccgggggaagagggggctcgggtcttgcaccataccccat 677
             ||||| |  || ||||| |||||||| ||||||||||| |||||
Sbjct: 19191 gcatctgctgggagaggaggctcgggccttgcaccatagcccat 19148
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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score =  170 bits (86), Expect = 4e-39
 Identities = 110/118 (93%)
 Strand = Plus / Minus

                                                                         
Query: 314   gactcgcacgacttaacgcctaccacgaggtccaccagctgacctcggaccaggaaagcg 373
             ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 94980 gactcgcgcgacttaacgcctaccacgaggcccgccagctgacctcggaccaggaaagcg 94921

                                                                       
Query: 374   cgagaattgcagccttaaatgggctgattcacgatcgtgttcgtcaaacttataacct 431
              ||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 94920 tgagaactgcagccgcaaatgggctgaatcacgatcgtgttcgtcaaacttataacct 94863



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                         
Query: 428   accttgcagagcttcaagtgcaatagtagcttgggcagggctatcaaaatcaacgaaaca 487
             ||||||||  |||||||| |||| ||||||||| |||||| ||||||||||||| || ||
Sbjct: 94388 accttgcaatgcttcaagagcaagagtagcttgcgcagggttatcaaaatcaacaaagca 94329

                                     
Query: 488   caggacatgaggatctccaccagg 511
             || ||||||||||||||| |||||
Sbjct: 94328 caagacatgaggatctcctccagg 94305



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 513   tgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatata 572
             ||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct: 94228 tgtcttgactccttgttgacaagtctgacttcacgaaaacctacaaaagggcgaaatata 94169

              
Query: 573   t 573
             |
Sbjct: 94168 t 94168



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 89/104 (85%), Gaps = 1/104 (0%)
 Strand = Plus / Minus

                                                                         
Query: 574   gtgaaacctcccttgcgtgtgcagtttgcaggcagaccttcaatatacaaagtgttggat 633
             |||| ||||||||| |||||||||||||||||||| |||||||  |||| |||| | |||
Sbjct: 93982 gtgacacctccctt-cgtgtgcagtttgcaggcaggccttcaacgtacagagtgcttgat 93924

                                                         
Query: 634   gcatccgggggaagagggggctcgggtcttgcaccataccccat 677
             ||||| |  || ||||| |||||||| ||||||||||| |||||
Sbjct: 93923 gcatctgctgggagaggaggctcgggccttgcaccatagcccat 93880
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>ref|XM_550578.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 882

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                       
Query: 498 ggatctccaccaggatgtcttgactctttgttgacaagcctcacttcacgaaaaccaaca 557
           ||||| ||||||||||||||||  |||||| | ||||| ||||| |||||||||||||||
Sbjct: 701 ggatccccaccaggatgtcttgcttctttgcttacaagtctcacctcacgaaaaccaaca 642

                           
Query: 558 aaagggcggaatatat 573
           || || ||||| ||||
Sbjct: 641 aatggtcggaagatat 626
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>gb|AY105296.1| Zea mays PCO103628 mRNA sequence
          Length = 945

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 141/176 (80%)
 Strand = Plus / Minus

                                                                       
Query: 405 cgatcgtgttcgtcaaacttataaccttgcagagcttcaagtgcaatagtagcttgggca 464
           ||||| || |||||||||||||| ||||||| ||| || | |||||||| || ||| | |
Sbjct: 884 cgatcatgctcgtcaaacttatagccttgcaaagcatccaatgcaatagcagattgtgta 825

                                                                       
Query: 465 gggctatcaaaatcaacgaaacacaggacatgaggatctccaccaggatgtcttgactct 524
           ||     |||||||||| ||||| ||||||  ||| || |||||||||||| | |  |||
Sbjct: 824 ggttccgcaaaatcaacaaaacaaaggacaatagggtcaccaccaggatgtttcggttct 765

                                                                   
Query: 525 ttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatatatgtgaaac 580
           ||||| ||||| || || |||||||| |||||||| || ||||| || ||||||||
Sbjct: 764 ttgtttacaagtctaacctcacgaaagccaacaaatggtcggaagatgtgtgaaac 709
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 512     atgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatat 571
               ||||||||  |||||| | ||||| ||||| ||||||||||||||||| || ||||| ||
Sbjct: 1455933 atgtcttgcttctttgcttacaagtctcacctcacgaaaaccaacaaatggtcggaagat 1455874

                 
Query: 572     at 573
               ||
Sbjct: 1455873 at 1455872
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 512   atgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatat 571
             ||||||||  |||||| | ||||| ||||| ||||||||||||||||| || ||||| ||
Sbjct: 63219 atgtcttgcttctttgcttacaagtctcacctcacgaaaaccaacaaatggtcggaagat 63160

               
Query: 572   at 573
             ||
Sbjct: 63159 at 63158
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                          
Query: 512    atgtcttgactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatat 571
              ||||||||  |||||| | ||||| ||||| ||||||||||||||||| || ||||| ||
Sbjct: 164472 atgtcttgcttctttgcttacaagtctcacctcacgaaaaccaacaaatggtcggaagat 164413

                
Query: 572    at 573
              ||
Sbjct: 164412 at 164411
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>ref|NM_202146.1| Arabidopsis thaliana nucleic acid binding AT1G21312 mRNA, complete
           cds
          Length = 633

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 471 tcaaaatcaacgaaacacaggacatgaggatctccac 507
           ||||||||||| |||||||| |||  |||||||||||
Sbjct: 491 tcaaaatcaacaaaacacagaacagtaggatctccac 455
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>ref|NM_106345.2| Arabidopsis thaliana nucleic acid binding AT1G76940 mRNA, complete
           cds
          Length = 1151

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 610 ccttcaatatacaaagtgttggatgcatc 638
           ||||||| ||| |||||||||||||||||
Sbjct: 595 ccttcaacatataaagtgttggatgcatc 567
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>gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 genomic sequence, complete
             sequence
          Length = 96642

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 610   ccttcaatatacaaagtgttggatgcatc 638
             ||||||| ||| |||||||||||||||||
Sbjct: 22443 ccttcaacatataaagtgttggatgcatc 22471
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>dbj|AK004455.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1190002J23
           product:unclassifiable, full insert sequence
          Length = 848

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 aacaaaatacagtagaccatataaatact 129
           ||||||||||| ||||| |||||||||||
Sbjct: 712 aacaaaatacaatagacaatataaatact 684
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>gb|AC036104.3|F16F4 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 55707

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 471  tcaaaatcaacgaaacacaggacatgaggatctccac 507
            ||||||||||| |||||||| |||  |||||||||||
Sbjct: 8984 tcaaaatcaacaaaacacagaacagtaggatctccac 8948
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>dbj|AK117533.1| Arabidopsis thaliana At1g76940 mRNA for unknown protein, complete
           cds, clone: RAFL17-19-B16
          Length = 803

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 610 ccttcaatatacaaagtgttggatgcatc 638
           ||||||| ||| |||||||||||||||||
Sbjct: 247 ccttcaacatataaagtgttggatgcatc 219
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>dbj|AK073499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E14, full
            insert sequence
          Length = 2450

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 519  gactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatatatgtgaa 578
            ||||| |||||||| |  ||||| ||||||||||||  ||| ||||| || ||||||| |
Sbjct: 1211 gactccttgttgaccaatctcacctcacgaaaaccagaaaaggggcgaaaaatatgtgca 1152

                 
Query: 579  acctc 583
            |||||
Sbjct: 1151 acctc 1147



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 411  tgttcgtcaaacttataaccttgcagag 438
            ||||| ||||||||||| ||||||||||
Sbjct: 1316 tgttcatcaaacttatagccttgcagag 1289
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>dbj|AK064353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A10, full
            insert sequence
          Length = 2379

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 519  gactctttgttgacaagcctcacttcacgaaaaccaacaaaagggcggaatatatgtgaa 578
            ||||| |||||||| |  ||||| ||||||||||||  ||| ||||| || ||||||| |
Sbjct: 1136 gactccttgttgaccaatctcacctcacgaaaaccagaaaaggggcgaaaaatatgtgca 1077

                 
Query: 579  acctc 583
            |||||
Sbjct: 1076 acctc 1072



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 411  tgttcgtcaaacttataaccttgcagag 438
            ||||| ||||||||||| ||||||||||
Sbjct: 1241 tgttcatcaaacttatagccttgcagag 1214
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>gb|AC087229.27| Mus musculus strain C57BL/6J chromosome 1 clone rp23-191a19, complete
              sequence
          Length = 215043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 101    aacaaaatacagtagaccatataaatact 129
              ||||||||||| ||||| |||||||||||
Sbjct: 104489 aacaaaatacaatagacaatataaatact 104461
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>gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O10, complete sequence
          Length = 156548

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tcaacgaaacacaggacatg 496
             ||||||||||||||||||||
Sbjct: 56023 tcaacgaaacacaggacatg 56004
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    tcaacgaaacacaggacatg 496
              ||||||||||||||||||||
Sbjct: 601564 tcaacgaaacacaggacatg 601545
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>gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8, complete sequence
          Length = 153310

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   tcaacgaaacacaggacatg 496
             ||||||||||||||||||||
Sbjct: 88364 tcaacgaaacacaggacatg 88345
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>ref|XM_818755.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 hypothetical protein
            (Tb927.7.2330) partial mRNA
          Length = 3300

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 477  tcaacgaaacacaggacatg 496
            ||||||||||||||||||||
Sbjct: 1184 tcaacgaaacacaggacatg 1203
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>gb|AC126121.2| Homo sapiens chromosome 3 clone RP11-719N22, complete sequence
          Length = 215273

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   tttgttgacaagcctcactt 543
             ||||||||||||||||||||
Sbjct: 86488 tttgttgacaagcctcactt 86507
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>gb|AC110612.3| Homo sapiens BAC clone RP11-416B16 from 4, complete sequence
          Length = 158472

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     ataacaaaatacagtagacc 118
              ||||||||||||||||||||
Sbjct: 157373 ataacaaaatacagtagacc 157354
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>gb|AC073848.4|AC073848 Homo sapiens BAC clone RP11-669M16 from 4, complete sequence
          Length = 163636

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    tccaccagctgacctcggac 363
              ||||||||||||||||||||
Sbjct: 122942 tccaccagctgacctcggac 122961
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>dbj|AK110546.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B09, full
           insert sequence
          Length = 1197

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 411 tgttcgtcaaacttataaccttgcagag 438
           ||||| ||||||||||| ||||||||||
Sbjct: 898 tgttcatcaaacttatagccttgcagag 871


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,786,942
Number of Sequences: 3902068
Number of extensions: 4786942
Number of successful extensions: 83446
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83321
Number of HSP's gapped (non-prelim): 120
length of query: 684
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 661
effective length of database: 17,143,297,704
effective search space: 11331719782344
effective search space used: 11331719782344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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