>gb|AY103545.1| Zea mays PCO153236 mRNA sequence
          Length = 1967

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                        
Query: 251  ctacaataaatacattcatacttctctagaacatattac-agatcagctatggcaatctc 309
            |||| ||||||||||||||||| ||||| |||| ||||| |||||| |||||||||||||
Sbjct: 1840 ctaccataaatacattcatactgctctataacaaattacaagatcaactatggcaatctc 1781



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 382  actactcagctacacaggtca 402
            |||||||||||||||||||||
Sbjct: 1725 actactcagctacacaggtca 1705

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                           
Query: 255     aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 308
               ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 8332843 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 8332784

                          
Query: 309     caattctcagg 319
               |||||||||||
Sbjct: 8332783 caattctcagg 8332773

>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                          
Query: 255    aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 308
              ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 126774 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 126715

                         
Query: 309    caattctcagg 319
              |||||||||||
Sbjct: 126714 caattctcagg 126704

>dbj|AK099742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C23, full
            insert sequence
          Length = 2624

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 255  aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 308
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 2608 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 2549

                       
Query: 309  caattctcagg 319
            |||||||||||
Sbjct: 2548 caattctcagg 2538

>dbj|AK104687.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-E09, full
            insert sequence
          Length = 1600

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 255  aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 308
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 1584 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 1525

                       
Query: 309  caattctcagg 319
            |||||||||||
Sbjct: 1524 caattctcagg 1514

>dbj|AK068737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158B10, full
            insert sequence
          Length = 1829

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/71 (87%), Gaps = 6/71 (8%)
 Strand = Plus / Minus

                                                                        
Query: 255  aataaatacattcata--cttctctagaacatattacag---atcagctatggcaa-tct 308
            ||||||||||||| ||  || ||||||||||||||||||   ||||||||||| || |||
Sbjct: 1737 aataaatacattcttaaactgctctagaacatattacagatcatcagctatgggaattct 1678

                       
Query: 309  caattctcagg 319
            |||||||||||
Sbjct: 1677 caattctcagg 1667

>gb|AC087565.5| Homo sapiens chromosome 16 clone RP11-53L24, complete sequence
          Length = 192937

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 634   aagttaaaaagaggaggcagaaa 656
             |||||||||||||||||||||||
Sbjct: 78161 aagttaaaaagaggaggcagaaa 78183

>emb|Z72504.1|CEC29E6 Caenorhabditis elegans Cosmid C29E6, complete sequence
          Length = 44614

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 283   atattacagatcagctatggcaatc 307
             |||||| ||||||||||||||||||
Sbjct: 39441 atattaaagatcagctatggcaatc 39417

>ref|XM_724814.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02054)
           partial mRNA
          Length = 270

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 86  gaacacaattcatctcaagtt 106
           |||||||||||||||||||||
Sbjct: 181 gaacacaattcatctcaagtt 161

>gb|DQ074903.1| Lactobacillus reuteri lr1464 (lr1464) gene, complete cds
          Length = 1257

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 300 tggcaatctcaattctcaggc 320
           |||||||||||||||||||||
Sbjct: 709 tggcaatctcaattctcaggc 729

>gb|AF273784.1| Caenorhabditis elegans clone yk514c7 nuclear receptor NHR-43 mRNA,
            partial cds
          Length = 1658

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 283  atattacagatcagctatggcaatc 307
            |||||| ||||||||||||||||||
Sbjct: 1579 atattaaagatcagctatggcaatc 1555

>ref|NM_069853.3| Caenorhabditis elegans Nuclear Hormone Receptor family member
            (nhr-43) (nhr-43) mRNA, complete cds
          Length = 1647

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 283  atattacagatcagctatggcaatc 307
            |||||| ||||||||||||||||||
Sbjct: 1594 atattaaagatcagctatggcaatc 1570

>gb|AY605256.1| Yersinia enterocolitica strain ATCC 9610 putative proline/betaine
           transport protein gene, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  gaacacaattcatctcaagt 105
           ||||||||||||||||||||
Sbjct: 197 gaacacaattcatctcaagt 216

>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence
          Length = 242222

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   catgcatgggagctctgctt 564
             ||||||||||||||||||||
Sbjct: 72585 catgcatgggagctctgctt 72604

>emb|CR457445.15| Zebrafish DNA sequence from clone CH211-204C5 in linkage group 8,
            complete sequence
          Length = 155181

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   caaatcaaggtgaacacaat 94
            ||||||||||||||||||||
Sbjct: 8193 caaatcaaggtgaacacaat 8212

>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence
          Length = 171537

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    caattaagaaactaggaaaa 225
              ||||||||||||||||||||
Sbjct: 156440 caattaagaaactaggaaaa 156459

>ref|XM_662029.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.60604)
            partial mRNA
          Length = 6708

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   caacagaatgaaaggtcact 55
            ||||||||||||||||||||
Sbjct: 4275 caacagaatgaaaggtcact 4294

>emb|AL590028.7| Human DNA sequence from clone RP11-384M8 on chromosome 13, complete
             sequence
          Length = 129332

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aataaatacattcatacttc 274
             ||||||||||||||||||||
Sbjct: 10689 aataaatacattcatacttc 10708

>emb|X99100.1|TRTRK T.repens mRNA for protein kinase
          Length = 1300

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 37/40 (92%), Gaps = 2/40 (5%)
 Strand = Plus / Minus

                                                   
Query: 602 actgggattccttttcagttcgttaggctttgaagttaaa 641
           ||||||||||||||| ||||||| ||| ||||||||||||
Sbjct: 962 actgggattcctttt-agttcgtgagg-tttgaagttaaa 925

>emb|BX538353.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 4/4
          Length = 277703

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     caacagaatgaaaggtcact 55
              ||||||||||||||||||||
Sbjct: 208048 caacagaatgaaaggtcact 208029

>emb|AL591070.19| Mouse DNA sequence from clone RP23-185A18 on chromosome 11 Contains the
              3' end of a novel gene, Traf4 gene for Tnf receptor
              associated factor 4, the Nek8 gene for NIMA (never in
              mitosis gene a)-related expressed kinase 8, six novel
              genes, the Rpl23a gene for ribosomal protein L23a, the
              Rab34 gene for RAB34 member of RAS oncogene family, the
              Supt6h gene for suppressor of Ty 6 homolog (S. cerevisiae),
              the Sdf2 gene for stromal cell derived factor 2, the Spag5
              gene for sperm associated antigen 5, the Aldo3 gene for
              aldolase 3 C isoform, the Pigs gene for
              phosphatidylinositol glycan class S and the Unc119 gene for
              unc-119 homolog (C. elegans), complete sequence
          Length = 233242

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aaggatcaactacaataaat 261
              ||||||||||||||||||||
Sbjct: 152030 aaggatcaactacaataaat 152011

>emb|BX571835.9| Zebrafish DNA sequence from clone XX-114C19 in linkage group 25,
             complete sequence
          Length = 32786

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ataaatacattcatacttct 275
             ||||||||||||||||||||
Sbjct: 31330 ataaatacattcatacttct 31349

>gb|AC113150.4| Homo sapiens BAC clone RP13-339P19 from 4, complete sequence
          Length = 98856

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 633 gaagttaaaaagaggaggcagaaa 656
           |||||||||||||||||| |||||
Sbjct: 922 gaagttaaaaagaggaggaagaaa 899

>gb|AC092812.2| Homo sapiens chromosome 1 clone RP11-536F12, complete sequence
          Length = 160903

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ttctctagaacatattacag 291
              ||||||||||||||||||||
Sbjct: 107488 ttctctagaacatattacag 107469

>ref|XM_627844.1| Cryptosporidium parvum Iowa II transcription elongation factor
            (cgd6_5250), partial mRNA
          Length = 6699

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   caacagaatgaaaggtcact 55
            ||||||||||||||||||||
Sbjct: 4272 caacagaatgaaaggtcact 4291

>gb|AC141000.7| Homo sapiens 3 BAC RP11-480C15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175946

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   catgcatgggagctctgctt 564
             ||||||||||||||||||||
Sbjct: 80470 catgcatgggagctctgctt 80451

>gb|AC011737.10| Homo sapiens BAC clone RP11-33N4 from 2, complete sequence
          Length = 176709

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    cagatcagctatggcaatct 308
              ||||||||||||||||||||
Sbjct: 128508 cagatcagctatggcaatct 128489

>gb|AC105287.5| Homo sapiens BAC clone RP11-313M11 from 4, complete sequence
          Length = 105001

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 633    gaagttaaaaagaggaggcagaaa 656
              |||||||||||||||||| |||||
Sbjct: 103923 gaagttaaaaagaggaggaagaaa 103900

>emb|AL954314.8| Zebrafish DNA sequence from clone XX-162M2 in linkage group 25,
             complete sequence
          Length = 81294

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ataaatacattcatacttct 275
             ||||||||||||||||||||
Sbjct: 80751 ataaatacattcatacttct 80732

>emb|Y18451.1|HSAP18451 Homo sapiens Bassoon (BSN) gene, exons 6 to 11
          Length = 6560

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 545  catgcatgggagctctgctt 564
            ||||||||||||||||||||
Sbjct: 3836 catgcatgggagctctgctt 3817

>gb|AC004807.1|AC004807 Mus musculus chromosome 11, clone mCIT.268_P_23, complete sequence
          Length = 110970

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   aaggatcaactacaataaat 261
             ||||||||||||||||||||
Sbjct: 16576 aaggatcaactacaataaat 16595

>emb|AL844493.6| Mouse DNA sequence from clone RP23-396G18 on chromosome 2, complete
              sequence
          Length = 166025

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     catctcaagttgcaacaaac 115
              ||||||||||||||||||||
Sbjct: 161638 catctcaagttgcaacaaac 161619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,155,742
Number of Sequences: 3902068
Number of extensions: 5155742
Number of successful extensions: 93388
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93292
Number of HSP's gapped (non-prelim): 91
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)