| Clone Name | rbags14p05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full insert mRNA sequence Length = 1654 Score = 735 bits (371), Expect = 0.0 Identities = 486/526 (92%), Gaps = 3/526 (0%) Strand = Plus / Minus Query: 6 agccttcggactttcattacaccaagccgntcaggtcatactcttattnaactgctaatt 65 |||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||| Sbjct: 1571 agcctttggactttcattacaccaagccactcagttcatactcttattcaactgctaatt 1512 Query: 66 gctgctcaactctaaatactacaccagcataaaccaagntttgattntgagagagtttgg 125 | ||||| |||||||||||||||||||| |||||||| |||| | |||| |||||||| Sbjct: 1511 gttgctcctctctaaatactacaccagcacaaaccaagttttgctgttgagcgagtttgg 1452 Query: 126 ttacattccaacattcanntctttgcttctcaatgganaacanagatgggtgcttaactc 185 ||||| ||| ||||||| |||||||||||||| ||| |||| ||||||||||||||||| Sbjct: 1451 ttacactccgacattcagctctttgcttctcaacggaaaacagagatgggtgcttaactc 1392 Query: 186 caaagcatcatcgagacagaacacaacaaaggcacan--tatcaaggaaataggggctga 243 |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 1391 caaagcatcatcgagaaagagcacaacaaaggcacaacatatcaaggaaataggggctga 1332 Query: 244 tattgcagtcccatgttctcangcagtcccatcatcanattgaggttctgcacggcctgg 303 |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1331 tattgcagccccatgttctcaggcagtcccatcatcagattgaggttctgcacggcctgg 1272 Query: 304 ccagatgcccccttcacaagattgtctatgacagagatgatgatggcccttccgggaatt 363 |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 1271 ccagatgctccctttacaagattgtctatgacagagatgatgattgcccttccaggaatt 1212 Query: 364 ctgtcctcgaagacattcatgaagcagtaattcgatccaacaacatggngtgtgtgagga 423 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1211 ctgtcctcgaagacattcatgaagcagtaatttgatccaacaacatggcgtgtgtgagga 1152 Query: 424 acattgctgtcatttaacaacttcacaaattcttcaccctcataagtagacttcagatgc 483 ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct: 1151 acattgctgccatttaacagcttgacaaattcttcaccctcataagtagacttgagatgc 1092 Query: 484 tgatacaaaatcactgacagtcactccaggtgccatttcaacaaac 529 |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 tgatac-aaatcactgacagtcactccaggtgccatttcaacaaac 1047
>ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative N-acetyl-gamma-glutamyl-phosphate reductase (OSJNBa0041P03.17), mRNA Length = 1251 Score = 333 bits (168), Expect = 3e-88 Identities = 268/301 (89%), Gaps = 1/301 (0%) Strand = Plus / Minus Query: 229 ggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanattgagg 288 ||||||||||||||||||||||| || |||||||| |||| |||||||||| ||||||| Sbjct: 1247 ggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagattgagg 1188 Query: 289 ttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatgatgatg 348 ||||| || ||||| ||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 1187 ttctggacagcctgaccagacgctcccttcacaagattatctataacagagatgatgatg 1128 Query: 349 gcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaacaaca 408 |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || ||| Sbjct: 1127 gcccttccaggaatcctgtcctcgaagacattcatgaagcagtaatttgatcccacgaca 1068 Query: 409 tggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccctcataa 468 ||| | |||||||||||| ||||| ||| ||| | ||| ||||| ||||| ||||||||| Sbjct: 1067 tggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaactcttcgccctcataa 1008 Query: 469 gtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttcaacaaa 528 |||||||| |||||||| ||| ||||||| | |||||||||||||||||||||||||||| Sbjct: 1007 gtagacttgagatgctggtac-aaatcaccggcagtcactccaggtgccatttcaacaaa 949 Query: 529 c 529 | Sbjct: 948 c 948
>dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100D05, full insert sequence Length = 1901 Score = 319 bits (161), Expect = 5e-84 Identities = 267/302 (88%), Gaps = 1/302 (0%) Strand = Plus / Minus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||||||||||||||| ||||||||||| || ||||||| |||| |||||||||| || Sbjct: 1512 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 1453 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343 | |||||||| || ||||| || ||||| |||||||||||||| ||||| ||||| |||| Sbjct: 1452 taaggttctgaacagcctgacctgatgctcccttcacaagattatctataacagatatga 1393 Query: 344 tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403 ||||||| | ||| |||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct: 1392 tgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaatttgatccca 1333 Query: 404 caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463 |||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||| Sbjct: 1332 caacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaattcttcaccct 1273 Query: 464 cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523 |||| |||||||| |||||||||||| |||||| || ||||||||||||||||||||||| Sbjct: 1272 catatgtagacttgagatgctgatac-aaatcattggcagtcactccaggtgccatttca 1214 Query: 524 ac 525 || Sbjct: 1213 ac 1212
>gb|AY108206.1| Zea mays PCO093732 mRNA sequence Length = 1830 Score = 250 bits (126), Expect = 4e-63 Identities = 259/303 (85%), Gaps = 1/303 (0%) Strand = Plus / Minus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 ||||||| || |||||||| |||||||| ||||| |||||| ||||||||||||||| || Sbjct: 1497 atcaagggaacaggggctggtattgcagccccatattctcaggcagtcccatcatcagat 1438 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343 | || || |||| ||||| |||||||| |||||||||||||| |||||||||||||||| Sbjct: 1437 taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 1378 Query: 344 tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403 ||||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||| | Sbjct: 1377 tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatccca 1318 Query: 404 caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463 |||||||| |||| |||||||||||| ||| ||||| ||| |||||||||||| || Sbjct: 1317 caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaaattcttcattct 1258 Query: 464 cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523 | ||||||||||| || || | |||| ||||| ||| ||||||||||| ||||| |||| Sbjct: 1257 cgtaagtagactttaggtgttcatac-aaatccctgggagtcactccagatgccaattca 1199 Query: 524 aca 526 ||| Sbjct: 1198 aca 1196
>gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence Length = 1436 Score = 226 bits (114), Expect = 6e-56 Identities = 256/303 (84%), Gaps = 1/303 (0%) Strand = Plus / Minus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 ||||||| || |||||||| |||||||| ||||| |||| | ||||||||||||||| || Sbjct: 1058 atcaagggaacaggggctggtattgcagccccatattcttaggcagtcccatcatcaaat 999 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343 | || || |||| ||||| |||||||| |||||||||||||| |||||||||||||||| Sbjct: 998 taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 939 Query: 344 tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403 ||||||||||||| || ||||| ||||| |||||||||||||||||||||| ||||| Sbjct: 938 tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatcccc 879 Query: 404 caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463 |||||||| |||| |||||||||||| ||| ||||| ||| |||| ||||||| || Sbjct: 878 caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaatttcttcattct 819 Query: 464 cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523 | ||||||||||| || || | |||| ||||| ||| ||||||||||| ||||| |||| Sbjct: 818 cgtaagtagactttaggtgttcatac-aaatccctgggagtcactccagatgccaattca 760 Query: 524 aca 526 ||| Sbjct: 759 aca 757
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 149 bits (75), Expect = 1e-32 Identities = 116/130 (89%) Strand = Plus / Plus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||| ||||||||||| | ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 82772 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 82831 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| ||||||||| ||||||||||||| |||| ||||||||| ||||||||| Sbjct: 82832 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 82891 Query: 454 tcttcaccct 463 |||||||||| Sbjct: 82892 tcttcaccct 82901 Score = 101 bits (51), Expect = 2e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||||||||||||||| ||||||||||| || ||||||| |||| |||||||||| || Sbjct: 82566 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 82625 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 | |||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct: 82626 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 82674 Score = 81.8 bits (41), Expect = 2e-12 Identities = 60/65 (92%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 ||||||| |||||||| ||||||||||||||| ||| || |||||||||||||||||||| Sbjct: 83072 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 83130 Query: 521 tcaac 525 ||||| Sbjct: 83131 tcaac 83135
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 1e-32 Identities = 116/130 (89%) Strand = Plus / Plus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||| ||||||||||| | ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 23246291 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23246350 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| ||||||||| ||||||||||||| |||| ||||||||| ||||||||| Sbjct: 23246351 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23246410 Query: 454 tcttcaccct 463 |||||||||| Sbjct: 23246411 tcttcaccct 23246420 Score = 101 bits (51), Expect = 2e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||||||||||||||| ||||||||||| || ||||||| |||| |||||||||| || Sbjct: 23246085 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23246144 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 | |||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct: 23246145 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23246193 Score = 81.8 bits (41), Expect = 2e-12 Identities = 60/65 (92%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 ||||||| |||||||| ||||||||||||||| ||| || |||||||||||||||||||| Sbjct: 23246591 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 23246649 Query: 521 tcaac 525 ||||| Sbjct: 23246650 tcaac 23246654
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 1e-32 Identities = 116/130 (89%) Strand = Plus / Plus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||| ||||||||||| | ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 23239319 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23239378 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| ||||||||| ||||||||||||| |||| ||||||||| ||||||||| Sbjct: 23239379 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23239438 Query: 454 tcttcaccct 463 |||||||||| Sbjct: 23239439 tcttcaccct 23239448 Score = 101 bits (51), Expect = 2e-18 Identities = 94/109 (86%) Strand = Plus / Plus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||||||||||||||| ||||||||||| || ||||||| |||| |||||||||| || Sbjct: 23239113 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23239172 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 | |||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct: 23239173 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23239221 Score = 81.8 bits (41), Expect = 2e-12 Identities = 60/65 (92%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 ||||||| |||||||| ||||||||||||||| ||| || |||||||||||||||||||| Sbjct: 23239619 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 23239677 Query: 521 tcaac 525 ||||| Sbjct: 23239678 tcaac 23239682
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 141 bits (71), Expect = 3e-30 Identities = 115/130 (88%) Strand = Plus / Plus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 89424 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 89483 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| Sbjct: 89484 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 89543 Query: 454 tcttcaccct 463 ||||| |||| Sbjct: 89544 tcttcgccct 89553 Score = 117 bits (59), Expect = 4e-23 Identities = 96/109 (88%) Strand = Plus / Plus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||| ||||||||||||||||||||||| || |||||||| |||| |||||||||| || Sbjct: 89218 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 89277 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 |||||||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct: 89278 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 89326 Score = 89.7 bits (45), Expect = 9e-15 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 |||||||||||||||| |||||||| |||||| |||| | |||||||||||||||||||| Sbjct: 89715 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 89773 Query: 521 tcaacaaac 529 ||||||||| Sbjct: 89774 tcaacaaac 89782
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 141 bits (71), Expect = 3e-30 Identities = 115/130 (88%) Strand = Plus / Minus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 18261746 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18261687 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| Sbjct: 18261686 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18261627 Query: 454 tcttcaccct 463 ||||| |||| Sbjct: 18261626 tcttcgccct 18261617 Score = 117 bits (59), Expect = 4e-23 Identities = 96/109 (88%) Strand = Plus / Minus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||| ||||||||||||||||||||||| || |||||||| |||| |||||||||| || Sbjct: 18261952 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18261893 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 |||||||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct: 18261892 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18261844 Score = 89.7 bits (45), Expect = 9e-15 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 |||||||||||||||| |||||||| |||||| |||| | |||||||||||||||||||| Sbjct: 18261455 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 18261397 Query: 521 tcaacaaac 529 ||||||||| Sbjct: 18261396 tcaacaaac 18261388
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 141 bits (71), Expect = 3e-30 Identities = 115/130 (88%) Strand = Plus / Minus Query: 334 acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 18270999 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18270940 Query: 394 ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453 || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| Sbjct: 18270939 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18270880 Query: 454 tcttcaccct 463 ||||| |||| Sbjct: 18270879 tcttcgccct 18270870 Score = 117 bits (59), Expect = 4e-23 Identities = 96/109 (88%) Strand = Plus / Minus Query: 224 atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283 |||| ||||||||||||||||||||||| || |||||||| |||| |||||||||| || Sbjct: 18271205 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18271146 Query: 284 tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332 |||||||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct: 18271145 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18271097 Score = 89.7 bits (45), Expect = 9e-15 Identities = 64/69 (92%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 461 cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520 |||||||||||||||| |||||||| |||||| |||| | |||||||||||||||||||| Sbjct: 18270708 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 18270650 Query: 521 tcaacaaac 529 ||||||||| Sbjct: 18270649 tcaacaaac 18270641
>gb|AE006455.1| Lactococcus lactis subsp. lactis IL1403 section 217 of 218 of the complete genome Length = 13412 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 485 gatacaaaatcactgacagtca 506 |||||||||||||||||||||| Sbjct: 7527 gatacaaaatcactgacagtca 7548
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.46 Identities = 46/54 (85%) Strand = Plus / Plus Query: 282 attgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgac 335 ||||||||||||||| |||||||| || || ||||| || || ||||| ||||| Sbjct: 6393078 attgaggttctgcaccgcctggcccgaagcgcccttgaccaggttgtcgatgac 6393131
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 0.46 Identities = 40/46 (86%) Strand = Plus / Minus Query: 288 gttctgcacggcctggccagatgcccccttcacaagattgtctatg 333 |||||| | |||||| || ||||| ||||||||||| ||||||||| Sbjct: 769635 gttctggatggcctgaccggatgcgcccttcacaaggttgtctatg 769590
>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence Length = 190266 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atgacagagatgatgatggc 350 |||||||||||||||||||| Sbjct: 125865 atgacagagatgatgatggc 125884
>gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete sequence Length = 70851 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atgacagagatgatgatggc 350 |||||||||||||||||||| Sbjct: 46892 atgacagagatgatgatggc 46911
>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete sequence Length = 220233 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 aaaatcactgacagtcactc 509 |||||||||||||||||||| Sbjct: 17292 aaaatcactgacagtcactc 17311
>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12, complete sequence Length = 101015 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gtttggttacattccaacat 139 |||||||||||||||||||| Sbjct: 89011 gtttggttacattccaacat 88992
>emb|AL137005.6| Human DNA sequence from clone RP1-230L10 on chromosome 6 Contains part of a novel gene, complete sequence Length = 103679 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 491 aaatcactgacagtcactccaggtgcca 518 ||||||||| |||||||||||| ||||| Sbjct: 11711 aaatcactgtcagtcactccagctgcca 11684
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ttgaggttctgcacggcctg 302 |||||||||||||||||||| Sbjct: 162032 ttgaggttctgcacggcctg 162051
>emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes and partial argH, argB genes Length = 3250 Score = 40.1 bits (20), Expect = 7.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 298 gcctggccagatgcccccttcacaagattgtctatg 333 ||||| || |||||||||||||| || ||||||||| Sbjct: 1800 gcctgacccgatgcccccttcacgaggttgtctatg 1765
>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence Length = 138141 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 tctatgacagagatgatgatggcc 351 |||||||||||| ||||||||||| Sbjct: 120009 tctatgacagaggtgatgatggcc 120032
>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence Length = 168863 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 ccaggtgccatttcaacaaa 528 |||||||||||||||||||| Sbjct: 117112 ccaggtgccatttcaacaaa 117131
>gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage Sfi21, complete genome Length = 40739 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tttaacaacttcacaaattc 455 |||||||||||||||||||| Sbjct: 38116 tttaacaacttcacaaattc 38097
>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9, complete sequence Length = 192039 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 caaaatcactgacagtcact 508 |||||||||||||||||||| Sbjct: 107108 caaaatcactgacagtcact 107089
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.2 Identities = 34/39 (87%) Strand = Plus / Minus Query: 266 gcagtcccatcatcanattgaggttctgcacggcctggc 304 ||||||||| ||| |||||||||||| |||||||||| Sbjct: 2749105 gcagtcccagcatgcgattgaggttctggacggcctggc 2749067
>gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosome 13, complete sequence Length = 188542 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 aaaatcactgacagtcactc 509 |||||||||||||||||||| Sbjct: 186608 aaaatcactgacagtcactc 186627 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,776,716 Number of Sequences: 3902068 Number of extensions: 3776716 Number of successful extensions: 62012 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61876 Number of HSP's gapped (non-prelim): 124 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)