ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14p05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full... 735 0.0
2ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative... 333 3e-88
3dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
4gb|AY108206.1| Zea mays PCO093732 mRNA sequence 250 4e-63
5gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence 226 6e-56
6gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom... 149 1e-32
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 149 1e-32
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
9gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 141 3e-30
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 141 3e-30
12gb|AE006455.1| Lactococcus lactis subsp. lactis IL1403 section 2... 44 0.46
13gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 44 0.46
14gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 44 0.46
15gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, comp... 40 7.2
16gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete ... 40 7.2
17emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chro... 40 7.2
18emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in ... 40 7.2
19emb|AL137005.6| Human DNA sequence from clone RP1-230L10 on chro... 40 7.2
20emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 7.2
21emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes ... 40 7.2
22gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, comp... 40 7.2
23gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete... 40 7.2
24gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage ... 40 7.2
25emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in... 40 7.2
26gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 7.2
27gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosom... 40 7.2

>gb|BT009392.1| Triticum aestivum clone wlm96.pk037.f18:fis, full insert mRNA
            sequence
          Length = 1654

 Score =  735 bits (371), Expect = 0.0
 Identities = 486/526 (92%), Gaps = 3/526 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    agccttcggactttcattacaccaagccgntcaggtcatactcttattnaactgctaatt 65
            |||||| |||||||||||||||||||||  |||| ||||||||||||| |||||||||||
Sbjct: 1571 agcctttggactttcattacaccaagccactcagttcatactcttattcaactgctaatt 1512

                                                                        
Query: 66   gctgctcaactctaaatactacaccagcataaaccaagntttgattntgagagagtttgg 125
            | |||||  |||||||||||||||||||| |||||||| |||| |  |||| ||||||||
Sbjct: 1511 gttgctcctctctaaatactacaccagcacaaaccaagttttgctgttgagcgagtttgg 1452

                                                                        
Query: 126  ttacattccaacattcanntctttgcttctcaatgganaacanagatgggtgcttaactc 185
            ||||| ||| |||||||  |||||||||||||| ||| |||| |||||||||||||||||
Sbjct: 1451 ttacactccgacattcagctctttgcttctcaacggaaaacagagatgggtgcttaactc 1392

                                                                        
Query: 186  caaagcatcatcgagacagaacacaacaaaggcacan--tatcaaggaaataggggctga 243
            |||||||||||||||| ||| |||||||||||||||   |||||||||||||||||||||
Sbjct: 1391 caaagcatcatcgagaaagagcacaacaaaggcacaacatatcaaggaaataggggctga 1332

                                                                        
Query: 244  tattgcagtcccatgttctcangcagtcccatcatcanattgaggttctgcacggcctgg 303
            |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1331 tattgcagccccatgttctcaggcagtcccatcatcagattgaggttctgcacggcctgg 1272

                                                                        
Query: 304  ccagatgcccccttcacaagattgtctatgacagagatgatgatggcccttccgggaatt 363
            |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1271 ccagatgctccctttacaagattgtctatgacagagatgatgattgcccttccaggaatt 1212

                                                                        
Query: 364  ctgtcctcgaagacattcatgaagcagtaattcgatccaacaacatggngtgtgtgagga 423
            |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 1211 ctgtcctcgaagacattcatgaagcagtaatttgatccaacaacatggcgtgtgtgagga 1152

                                                                        
Query: 424  acattgctgtcatttaacaacttcacaaattcttcaccctcataagtagacttcagatgc 483
            ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 1151 acattgctgccatttaacagcttgacaaattcttcaccctcataagtagacttgagatgc 1092

                                                          
Query: 484  tgatacaaaatcactgacagtcactccaggtgccatttcaacaaac 529
            |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 tgatac-aaatcactgacagtcactccaggtgccatttcaacaaac 1047



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>ref|NM_197149.1| Oryza sativa (japonica cultivar-group) putative
            N-acetyl-gamma-glutamyl-phosphate reductase
            (OSJNBa0041P03.17), mRNA
          Length = 1251

 Score =  333 bits (168), Expect = 3e-88
 Identities = 268/301 (89%), Gaps = 1/301 (0%)
 Strand = Plus / Minus

                                                                        
Query: 229  ggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanattgagg 288
            ||||||||||||||||||||||| ||  |||||||| |||| |||||||||| |||||||
Sbjct: 1247 ggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagattgagg 1188

                                                                        
Query: 289  ttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatgatgatg 348
            ||||| || ||||| ||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct: 1187 ttctggacagcctgaccagacgctcccttcacaagattatctataacagagatgatgatg 1128

                                                                        
Query: 349  gcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaacaaca 408
            |||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||
Sbjct: 1127 gcccttccaggaatcctgtcctcgaagacattcatgaagcagtaatttgatcccacgaca 1068

                                                                        
Query: 409  tggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccctcataa 468
            ||| | |||||||||||| ||||| ||| ||| | ||| ||||| ||||| |||||||||
Sbjct: 1067 tggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaactcttcgccctcataa 1008

                                                                        
Query: 469  gtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttcaacaaa 528
            |||||||| |||||||| ||| ||||||| | ||||||||||||||||||||||||||||
Sbjct: 1007 gtagacttgagatgctggtac-aaatcaccggcagtcactccaggtgccatttcaacaaa 949

             
Query: 529  c 529
            |
Sbjct: 948  c 948



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>dbj|AK071544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100D05, full
            insert sequence
          Length = 1901

 Score =  319 bits (161), Expect = 5e-84
 Identities = 267/302 (88%), Gaps = 1/302 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
            |||||||||||||||| ||||||||||| ||  |||||||  |||| |||||||||| ||
Sbjct: 1512 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 1453

                                                                        
Query: 284  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343
            | |||||||| || ||||| || ||||| |||||||||||||| ||||| ||||| ||||
Sbjct: 1452 taaggttctgaacagcctgacctgatgctcccttcacaagattatctataacagatatga 1393

                                                                        
Query: 344  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403
            ||||||| | ||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 1392 tgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaatttgatccca 1333

                                                                        
Query: 404  caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463
            |||||||| |||||||||||||  ||||  |||||||||  |||||||||||||||||||
Sbjct: 1332 caacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaattcttcaccct 1273

                                                                        
Query: 464  cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523
            |||| |||||||| |||||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 1272 catatgtagacttgagatgctgatac-aaatcattggcagtcactccaggtgccatttca 1214

              
Query: 524  ac 525
            ||
Sbjct: 1213 ac 1212



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>gb|AY108206.1| Zea mays PCO093732 mRNA sequence
          Length = 1830

 Score =  250 bits (126), Expect = 4e-63
 Identities = 259/303 (85%), Gaps = 1/303 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
            ||||||| || |||||||| |||||||| ||||| |||||| ||||||||||||||| ||
Sbjct: 1497 atcaagggaacaggggctggtattgcagccccatattctcaggcagtcccatcatcagat 1438

                                                                        
Query: 284  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343
            | || || ||||  ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 1437 taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 1378

                                                                        
Query: 344  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403
            ||||||||||||| || ||||| |||||  |||||||||||||||||||||| ||||| |
Sbjct: 1377 tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatccca 1318

                                                                        
Query: 404  caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463
            ||||||||  ||||  ||||||||||||  ||| ||||| ||| ||||||||||||  ||
Sbjct: 1317 caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaaattcttcattct 1258

                                                                        
Query: 464  cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523
            | ||||||||||| || || | |||| ||||| |||  ||||||||||| ||||| ||||
Sbjct: 1257 cgtaagtagactttaggtgttcatac-aaatccctgggagtcactccagatgccaattca 1199

               
Query: 524  aca 526
            |||
Sbjct: 1198 aca 1196



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>gb|BT017894.1| Zea mays clone EL01N0515C03.c mRNA sequence
          Length = 1436

 Score =  226 bits (114), Expect = 6e-56
 Identities = 256/303 (84%), Gaps = 1/303 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
            ||||||| || |||||||| |||||||| ||||| |||| | ||||||||||||||| ||
Sbjct: 1058 atcaagggaacaggggctggtattgcagccccatattcttaggcagtcccatcatcaaat 999

                                                                        
Query: 284  tgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgacagagatga 343
            | || || ||||  ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct: 998  taagattttgcaaagcctgaccagatgctcccttcacaagattatctatgacagagatga 939

                                                                        
Query: 344  tgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaattcgatccaa 403
            ||||||||||||| || ||||| |||||  |||||||||||||||||||||| |||||  
Sbjct: 938  tgatggcccttccaggtattctatcctcatagacattcatgaagcagtaatttgatcccc 879

                                                                        
Query: 404  caacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaattcttcaccct 463
            ||||||||  ||||  ||||||||||||  ||| ||||| ||| |||| |||||||  ||
Sbjct: 878  caacatggcttgtgcaaggaacattgctaccatgtaacagcttgacaatttcttcattct 819

                                                                        
Query: 464  cataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatttca 523
            | ||||||||||| || || | |||| ||||| |||  ||||||||||| ||||| ||||
Sbjct: 818  cgtaagtagactttaggtgttcatac-aaatccctgggagtcactccagatgccaattca 760

               
Query: 524  aca 526
            |||
Sbjct: 759  aca 757



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>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score =  149 bits (75), Expect = 1e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                         
Query: 334   acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
             ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 82772 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 82831

                                                                         
Query: 394   ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
             || ||||| ||||||||| |||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 82832 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 82891

                       
Query: 454   tcttcaccct 463
             ||||||||||
Sbjct: 82892 tcttcaccct 82901



 Score =  101 bits (51), Expect = 2e-18
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                         
Query: 224   atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
             |||||||||||||||| ||||||||||| ||  |||||||  |||| |||||||||| ||
Sbjct: 82566 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 82625

                                                              
Query: 284   tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
             | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 82626 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 82674



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 461   cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
             ||||||| |||||||| ||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 83072 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 83130

                  
Query: 521   tcaac 525
             |||||
Sbjct: 83131 tcaac 83135



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  149 bits (75), Expect = 1e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                            
Query: 334      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
                ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 23246291 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23246350

                                                                            
Query: 394      ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
                || ||||| ||||||||| |||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 23246351 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23246410

                          
Query: 454      tcttcaccct 463
                ||||||||||
Sbjct: 23246411 tcttcaccct 23246420



 Score =  101 bits (51), Expect = 2e-18
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 224      atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
                |||||||||||||||| ||||||||||| ||  |||||||  |||| |||||||||| ||
Sbjct: 23246085 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23246144

                                                                 
Query: 284      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
                | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 23246145 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23246193



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 461      cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
                ||||||| |||||||| ||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 23246591 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 23246649

                     
Query: 521      tcaac 525
                |||||
Sbjct: 23246650 tcaac 23246654



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  149 bits (75), Expect = 1e-32
 Identities = 116/130 (89%)
 Strand = Plus / Plus

                                                                            
Query: 334      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
                ||||| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 23239319 acagatatgatgatggcacgtccaggaattctgtcctcaaagacattcatgaagcagtaa 23239378

                                                                            
Query: 394      ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
                || ||||| ||||||||| |||||||||||||  ||||  |||||||||  |||||||||
Sbjct: 23239379 tttgatcccacaacatggcgtgtgtgaggaacgctgctaccatttaacagtttcacaaat 23239438

                          
Query: 454      tcttcaccct 463
                ||||||||||
Sbjct: 23239439 tcttcaccct 23239448



 Score =  101 bits (51), Expect = 2e-18
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 224      atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
                |||||||||||||||| ||||||||||| ||  |||||||  |||| |||||||||| ||
Sbjct: 23239113 atcaaggaaataggggttgatattgcagcccagtgttctctggcagacccatcatcagat 23239172

                                                                 
Query: 284      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
                | |||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 23239173 taaggttctgaacagcctgacctgatgctcccttcacaagattatctat 23239221



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 461      cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
                ||||||| |||||||| ||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 23239619 cctcatatgtagacttgagatgctgatacaaa-tcattggcagtcactccaggtgccatt 23239677

                     
Query: 521      tcaac 525
                |||||
Sbjct: 23239678 tcaac 23239682



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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score =  141 bits (71), Expect = 3e-30
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                         
Query: 334   acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
             ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 89424 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 89483

                                                                         
Query: 394   ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
             || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 89484 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 89543

                       
Query: 454   tcttcaccct 463
             ||||| ||||
Sbjct: 89544 tcttcgccct 89553



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 224   atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
             |||| ||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||
Sbjct: 89218 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 89277

                                                              
Query: 284   tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
             |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 89278 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 89326



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Plus

                                                                         
Query: 461   cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
             |||||||||||||||| |||||||| |||||| |||| | ||||||||||||||||||||
Sbjct: 89715 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 89773

                      
Query: 521   tcaacaaac 529
             |||||||||
Sbjct: 89774 tcaacaaac 89782



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  141 bits (71), Expect = 3e-30
 Identities = 115/130 (88%)
 Strand = Plus / Minus

                                                                            
Query: 334      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
                ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 18261746 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18261687

                                                                            
Query: 394      ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
                || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 18261686 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18261627

                          
Query: 454      tcttcaccct 463
                ||||| ||||
Sbjct: 18261626 tcttcgccct 18261617



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 224      atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
                |||| ||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||
Sbjct: 18261952 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18261893

                                                                 
Query: 284      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
                |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 18261892 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18261844



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                            
Query: 461      cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
                |||||||||||||||| |||||||| |||||| |||| | ||||||||||||||||||||
Sbjct: 18261455 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 18261397

                         
Query: 521      tcaacaaac 529
                |||||||||
Sbjct: 18261396 tcaacaaac 18261388



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  141 bits (71), Expect = 3e-30
 Identities = 115/130 (88%)
 Strand = Plus / Minus

                                                                            
Query: 334      acagagatgatgatggcccttccgggaattctgtcctcgaagacattcatgaagcagtaa 393
                ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 18270999 acagagatgatgatggcccttccaggaatcctgtcctcgaagacattcatgaagcagtaa 18270940

                                                                            
Query: 394      ttcgatccaacaacatggngtgtgtgaggaacattgctgtcatttaacaacttcacaaat 453
                || ||||| || |||||| | |||||||||||| ||||| ||| ||| | ||| ||||| 
Sbjct: 18270939 tttgatcccacgacatggcgcgtgtgaggaacagtgctgccatgtaaaagcttgacaaac 18270880

                          
Query: 454      tcttcaccct 463
                ||||| ||||
Sbjct: 18270879 tcttcgccct 18270870



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/109 (88%)
 Strand = Plus / Minus

                                                                            
Query: 224      atcaaggaaataggggctgatattgcagtcccatgttctcangcagtcccatcatcanat 283
                |||| ||||||||||||||||||||||| ||  |||||||| |||| |||||||||| ||
Sbjct: 18271205 atcatggaaataggggctgatattgcagccctctgttctcaggcaggcccatcatcagat 18271146

                                                                 
Query: 284      tgaggttctgcacggcctggccagatgcccccttcacaagattgtctat 332
                |||||||||| || ||||| ||||| || |||||||||||||| |||||
Sbjct: 18271145 tgaggttctggacagcctgaccagacgctcccttcacaagattatctat 18271097



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 64/69 (92%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                            
Query: 461      cctcataagtagacttcagatgctgatacaaaatcactgacagtcactccaggtgccatt 520
                |||||||||||||||| |||||||| |||||| |||| | ||||||||||||||||||||
Sbjct: 18270708 cctcataagtagacttgagatgctggtacaaa-tcaccggcagtcactccaggtgccatt 18270650

                         
Query: 521      tcaacaaac 529
                |||||||||
Sbjct: 18270649 tcaacaaac 18270641



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>gb|AE006455.1| Lactococcus lactis subsp. lactis IL1403 section 217 of 218 of the
            complete genome
          Length = 13412

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 485  gatacaaaatcactgacagtca 506
            ||||||||||||||||||||||
Sbjct: 7527 gatacaaaatcactgacagtca 7548



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 282     attgaggttctgcacggcctggccagatgcccccttcacaagattgtctatgac 335
               ||||||||||||||| |||||||| || || ||||| || || ||||| |||||
Sbjct: 6393078 attgaggttctgcaccgcctggcccgaagcgcccttgaccaggttgtcgatgac 6393131



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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 288    gttctgcacggcctggccagatgcccccttcacaagattgtctatg 333
              |||||| | |||||| || ||||| ||||||||||| |||||||||
Sbjct: 769635 gttctggatggcctgaccggatgcgcccttcacaaggttgtctatg 769590



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>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence
          Length = 190266

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    atgacagagatgatgatggc 350
              ||||||||||||||||||||
Sbjct: 125865 atgacagagatgatgatggc 125884



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>gb|AC002540.1| Homo sapiens BAC clone GS1-25M2 from 7, complete sequence
          Length = 70851

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   atgacagagatgatgatggc 350
             ||||||||||||||||||||
Sbjct: 46892 atgacagagatgatgatggc 46911



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>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
             sequence
          Length = 220233

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   aaaatcactgacagtcactc 509
             ||||||||||||||||||||
Sbjct: 17292 aaaatcactgacagtcactc 17311



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>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12,
             complete sequence
          Length = 101015

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gtttggttacattccaacat 139
             ||||||||||||||||||||
Sbjct: 89011 gtttggttacattccaacat 88992



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>emb|AL137005.6| Human DNA sequence from clone RP1-230L10 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 103679

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 491   aaatcactgacagtcactccaggtgcca 518
             ||||||||| |||||||||||| |||||
Sbjct: 11711 aaatcactgtcagtcactccagctgcca 11684



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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    ttgaggttctgcacggcctg 302
              ||||||||||||||||||||
Sbjct: 162032 ttgaggttctgcacggcctg 162051



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>emb|AJ009897.1|TNAJ9897 Thermotoga neapolitana argC, argJ genes and partial argH, argB genes
          Length = 3250

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 298  gcctggccagatgcccccttcacaagattgtctatg 333
            ||||| || |||||||||||||| || |||||||||
Sbjct: 1800 gcctgacccgatgcccccttcacgaggttgtctatg 1765



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>gb|AC087653.6| Homo sapiens chromosome 11, clone RP1-259N9, complete sequence
          Length = 138141

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    tctatgacagagatgatgatggcc 351
              |||||||||||| |||||||||||
Sbjct: 120009 tctatgacagaggtgatgatggcc 120032



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>gb|AC011286.7| Homo sapiens BAC clone RP11-4H21 from 2, complete sequence
          Length = 168863

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    ccaggtgccatttcaacaaa 528
              ||||||||||||||||||||
Sbjct: 117112 ccaggtgccatttcaacaaa 117131



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>gb|AF115103.1|AF115103 Streptococcus thermophilus bacteriophage Sfi21, complete genome
          Length = 40739

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   tttaacaacttcacaaattc 455
             ||||||||||||||||||||
Sbjct: 38116 tttaacaacttcacaaattc 38097



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>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9,
              complete sequence
          Length = 192039

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 489    caaaatcactgacagtcact 508
              ||||||||||||||||||||
Sbjct: 107108 caaaatcactgacagtcact 107089



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                      
Query: 266     gcagtcccatcatcanattgaggttctgcacggcctggc 304
               ||||||||| |||   |||||||||||| ||||||||||
Sbjct: 2749105 gcagtcccagcatgcgattgaggttctggacggcctggc 2749067



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>gb|AC154248.2| Mus musculus BAC clone RP24-182I14 from chromosome 13, complete sequence
          Length = 188542

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 490    aaaatcactgacagtcactc 509
              ||||||||||||||||||||
Sbjct: 186608 aaaatcactgacagtcactc 186627


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,776,716
Number of Sequences: 3902068
Number of extensions: 3776716
Number of successful extensions: 62012
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61876
Number of HSP's gapped (non-prelim): 124
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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