>RINT1_MOUSE (Q8BZ36) RAD50-interacting protein 1 (RAD50 interactor 1) (Protein|
           RINT-1)
          Length = 792

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 269 GAKIMARLKFKGSLARNIISQSSSSLA-----PAAFCLLFSRPRLQEPELHTLHRYLLAF 433
           G+ + ARL+F   L   I+ + +S +       + FC L     L E ELHT+H Y   F
Sbjct: 363 GSAVNARLEFSRGLVMLILEKLASDIPCLLYDDSLFCHLVDEVLLFERELHTVHGYPSTF 422

>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
           (Foocen) (Glut4 vesicle 20 kDa protein)
          Length = 1163

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -1

Query: 542 NVSPQNSSERYTYPLVKRPKGESRENHMKNTSSSGAGRPEGSDAGCVVLALEAVDEKTKD 363
           N + +   ER T P V R   E  E       SS  G P+G  A  V    E V  ++KD
Sbjct: 258 NEASKELPERATNPFVNRDLAEFSELEYSEMGSSFKGSPKGESAILVENTKEEVIVRSKD 317

Query: 362 K 360
           K
Sbjct: 318 K 318

>AKAP5_HUMAN (P24588) A-kinase anchor protein 5 (A-kinase anchor protein 79 kDa)|
           (AKAP 79) (cAMP-dependent protein kinase regulatory
           subunit II high affinity-binding protein) (H21)
          Length = 427

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = -1

Query: 602 NEGITQDGPLKQDIGGGLRT---NVSPQNSSERYTYPLVKRPKGESRENHMKNTSSSGAG 432
           +E   Q  PL+ ++   +     ++S + +  R   P +K P+G  R NH K    S   
Sbjct: 92  SESSKQQKPLEGEMQPAINAEDADLSKKKAKSRLKIPCIKFPRGPKRSNHSKIIEDSDCS 151

Query: 431 RPEGSDAGCVVLALEAV--DEKTKDKMLQELKK 339
                +A  + +  +    D+ TK K  Q+L +
Sbjct: 152 IKVQEEAEILDIQTQTPLNDQATKAKSTQDLSE 184

>AKAP5_BOVIN (P24275) A-kinase anchor protein 5 (A-kinase anchor protein 75 kDa)|
           (AKAP 75) (cAMP-dependent protein kinase regulatory
           subunit II high affinity binding protein) (P75)
          Length = 428

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = -1

Query: 602 NEGITQDGPLKQDIGGGLRT---NVSPQNSSERYTYPLVKRPKGESRENHMKNTSSSGAG 432
           +E   Q  P K  +   +     N S + +  R   P +K  KGE R NH K    S   
Sbjct: 92  SESSKQQKPFKAKLQSEINAEDANPSKKKAKSRLKIPCIKFSKGEKRSNHSKIIEDSDRS 151

Query: 431 -RPEGSDAGCVVLALEAVDEKTKDKMLQELKK 339
            + + ++        ++ D+ TK K  Q++++
Sbjct: 152 VKVQEAENLVTKTQTQSDDQATKSKSPQDVRE 183

>IDH_SYNY3 (P80046) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)|
           (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
           ICDH) (IDP)
          Length = 475

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 626 EDTPSGILNEGITQDGPLKQDIGGGLRT-NVSPQNSSERYT 507
           EDT + I   G+   GPL   +GGG+R+ NV+ +   + YT
Sbjct: 86  EDTLTAIKEYGVAIKGPLTTPVGGGIRSLNVALRQIFDLYT 126

>YJG4_YEAST (P47038) Hypothetical 13.9 kDa protein in SMC3-MRPL8 intergenic|
           region
          Length = 131

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 249 SLKFVTHMVGVLLLENLEVASQQCIVMAEMEDIEHFIVPWAWVLLSP*TSHSAFGTCAVI 70
           SLKF   +VG+   +N    S++C + AEM   +              +S  + GTC   
Sbjct: 15  SLKFF--VVGITSFKNCRWPSEECTIAAEMSSYDSV------------SSSGSGGTCC-- 58

Query: 69  GCVHCCVSCCFHR 31
               CC  CC  R
Sbjct: 59  ----CCCCCCLCR 67

>ATKB_MYXXA (Q93MV5) Potassium-transporting ATPase B chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase B chain) (ATP
           phosphohydrolase [potassium-transporting] B chain)
           (Potassium-binding and translocating subunit B)
          Length = 686

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
 Frame = +3

Query: 456 LHMILSGLTF-----------WALYQGVSISFTAILRADICSQPTT 560
           LH++L GLT             ALY GV +S TA++   +C  PTT
Sbjct: 222 LHILLVGLTLIFLLACVTLVPLALYSGVPLSGTAVVALLVCLIPTT 267

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = -1

Query: 644 KSDAVNEDTPSGILNEGITQDGPLKQDI--GGGLRTNVSPQNSSERYTYPLVKRPKGESR 471
           K   +  D+P G L  G     PL  ++  GGGL   + P+        P V  P G  R
Sbjct: 391 KKPGILGDSPLGALQPGAQPANPLLGELPAGGGLPPELPPRRGKPPPLLPSVLGPAGGDR 450

Query: 470 E 468
           E
Sbjct: 451 E 451

>Y286_MYCPN (P75491) Very hypothetical adhesin P1-like protein MPN286|
           (A65_orf465V)
          Length = 465

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 494 KRPKGESRENHMKNTSSSGAGRPEGSDAG 408
           K   G+S ENH K TS++G+G+ +GS +G
Sbjct: 97  KASSGQSDENHTKFTSATGSGQ-QGSSSG 124

>YJ42_YEAST (P47122) Hypothetical 43.2 kDa protein in HAM1-PEM2 intergenic|
           region
          Length = 385

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 602 NEGITQDGPLKQDIGGGLRTNVSPQNSSERYTYPLVKRPKGESREN 465
           N+ I     L++D   GL      +     YT+P  +R KGE  EN
Sbjct: 306 NDSIDAISDLEEDANDGLVDRDEDEGVEREYTFPGEERTKGEVNEN 351

>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
           (Fragment)
          Length = 644

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
 Frame = -1

Query: 632 VNEDTPSGILNEGITQDGPLKQDIG-------GGLRTNVSPQNSSERYTYPLVKRPKGES 474
           + + T  G+  E    + PL+Q+         GG     S Q S       +    +GE 
Sbjct: 478 ITKPTKVGLEKETKEGEKPLQQEKEKEKAGEEGGSEEEGSDQGSKRAKKEDIAVNGEGEG 537

Query: 473 RENHMKNTSSSGAGRPEGSDAGCVVLALEAVDEK-----TKDKMLQELKKRKI 330
           +E     T   G+GR E        L L   DEK     +++K++   K  KI
Sbjct: 538 KEEEEPETKEKGSGREEEKGVVTNGLDLSPADEKKGGDRSEEKVVVTKKVEKI 590


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,889,347
Number of Sequences: 219361
Number of extensions: 1874447
Number of successful extensions: 5081
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5075
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)