>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)|
          Length = 617

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +2

Query: 26  TTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*SLVRCFGRNQFPGCDGRCVQGP 187
           TTSP    PP   P  P +      +HR H      C      PG  GRC++ P
Sbjct: 37  TTSPPPAQPPPGPPALPAEPGPGGALHRRH------CHHHRARPGGRGRCLRAP 84

>PHY_PINSY (Q41046) Phytochrome|
          Length = 1131

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +3

Query: 195  IHRGMLIRDY*RFQLHVPELQRTIRTEAIFPDSLRLTALLPIVIAIVARVWPSP*GPCGL 374
            + +GM++      QL + E+   ++T  ++ D +++  +L   +  V R  PSP G   +
Sbjct: 979  VSQGMIVLREKGLQL-IREIPGEVKTMRLYGDEVKIQQILADFLLNVLRFTPSPEGWVAI 1037

Query: 375  DVIPTFLQYLTGSPS*VRHAPFSLFRSG 458
             V PT  Q   G    V H  F +   G
Sbjct: 1038 KVFPTLKQ--LGGGLHVVHLEFRITHPG 1063

>SYA_ZYMMO (Q9RNN8) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 890

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 396 GGRWG*RQVRMALMGWATHVLQWQ*QWEARL*GGANPERLPQFGLFSATREHEVEIASNR 217
           G ++G  +VR+  MG   +    +  W   L GG +   L Q GLF    E  V     R
Sbjct: 647 GEKYG-NEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSETAVSSGIRR 705

Query: 216 GSACRGE 196
             A  GE
Sbjct: 706 IEAVTGE 712

>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein|
           EAR-1) (Rev-erbA-alpha)
          Length = 614

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 13/52 (25%), Positives = 17/52 (32%)
 Frame = -3

Query: 458 PAPKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGC 303
           PAP             A   L +        WP     H+C+  N NG + C
Sbjct: 338 PAPNDNNTLAAQRHNEALNGLRQAPSSYPPTWPPGPAHHSCHQSNSNGHRLC 389

>LDLR_RAT (P35952) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 879

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 359 LWA--GPHTCYNGNDNGKQGCKAERIRKDCLSSDCS 258
           LWA  G   C +G+D   Q C AE    + +SS CS
Sbjct: 164 LWACDGDRDCDDGSDEWPQNCGAEDTAAEVVSSPCS 199

>AP4B1_MOUSE (Q9WV76) AP-4 complex subunit beta-1 (Adapter-related protein|
           complex 4 beta-1 subunit) (Beta subunit of AP-4) (AP-4
           adapter complex beta subunit)
          Length = 739

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 188 GTYSPRHADPRLLAISTSCSRVAENNP 268
           GTY+P   D  LLAI+T C   ++ NP
Sbjct: 73  GTYAPLKPDLALLAINTLCKDCSDPNP 99

>PHY1_PHYPA (P36505) Phytochrome 1|
          Length = 1132

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = +3

Query: 249  ELQRTIRTEAIFPDSLRLTALLPIVIAIVARVWPSP*GPCGLDVIPTFLQYLTGSPS*VR 428
            E  R I T  +  D +RL  +L   +    R  PSP G   + V+PT  +   G    V 
Sbjct: 988  ETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKIKVVPT--RKRLGGSVHVV 1045

Query: 429  HAPFSLFRSGA 461
            H  F +   GA
Sbjct: 1046 HLEFRVSHPGA 1056

>GPC5B_MOUSE (Q923Z0) G-protein coupled receptor family C group 5 member B|
           precursor (Retinoic acid-induced gene 2 protein)
           (RAIG-2)
          Length = 410

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 252 LQRTIRTEAIFPDSLRLTALLPIVIAIVARVWPSP*GPCGLDVIPTFL 395
           L+R +RT  +FP  L L      VIA VA    S    CGLD++P ++
Sbjct: 5   LERKMRTHQVFPLPLLL------VIASVASENASTSRGCGLDLLPQYV 46

>BEH4_ARATH (Q9ZV88) BES1/BZR1 homolog protein 4|
          Length = 325

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -3

Query: 428 PHSRGTASEILEEGGD---DVKSAWPLWAGPHTCYNGNDNGK-QGCKAERIRKDCLSSDC 261
           P   GT S  +  G D   DV  +  + A P   +  N NG  +  + ERI ++  S D 
Sbjct: 257 PGQSGTCSPAIPPGADQTADVPMSEAV-APPEFAFGSNTNGLVKAWEGERIHEESGSDDL 315

Query: 260 SLQLGN 243
            L LGN
Sbjct: 316 ELTLGN 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,709,522
Number of Sequences: 219361
Number of extensions: 1871302
Number of successful extensions: 5162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5162
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)