| Clone Name | rbags15d17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483837.1| Oryza sativa (japonica cultivar-group), mRNA Length = 748 Score = 347 bits (175), Expect = 3e-92 Identities = 256/283 (90%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatctgtacagccgccaat 378 |||||| || ||||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 524 cagcatggtagctagctcccctttgcgatgaagcttcacagtatctgtacagccaccaat 465 Query: 379 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcaacctctctaacac 438 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 464 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcagccgctctaacac 405 Query: 439 cttttgcagttgtggtccctgagcaccgagatggtcgagctcgatgacatgtggatccac 498 |||||||| || |||||||| || ||||| ||||||||||||||||| || || | || Sbjct: 404 cttttgcaactgaggtccctgtgcgccgagttggtcgagctcgatgacgtgcggctggac 345 Query: 499 gccaatccgcttgaagagacccttgacctccattgaatacgagcaccacgacttggagta 558 ||| |||||||||||||| ||||||||||||| || || |||||||| ||||||||||| Sbjct: 344 gccgatccgcttgaagagcgccttgacctccatggagtaggagcaccaggacttggagta 285 Query: 559 gatgacgacggggttgtcggcgagcgtcttcttgacagagtcc 601 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 284 gatgacgacggggttgtcggcgagcgtcctcttgacagagtcc 242
>dbj|AK062431.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H10, full insert sequence Length = 748 Score = 347 bits (175), Expect = 3e-92 Identities = 256/283 (90%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatctgtacagccgccaat 378 |||||| || ||||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 524 cagcatggtagctagctcccctttgcgatgaagcttcacagtatctgtacagccaccaat 465 Query: 379 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcaacctctctaacac 438 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 464 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcagccgctctaacac 405 Query: 439 cttttgcagttgtggtccctgagcaccgagatggtcgagctcgatgacatgtggatccac 498 |||||||| || |||||||| || ||||| ||||||||||||||||| || || | || Sbjct: 404 cttttgcaactgaggtccctgtgcgccgagttggtcgagctcgatgacgtgcggctggac 345 Query: 499 gccaatccgcttgaagagacccttgacctccattgaatacgagcaccacgacttggagta 558 ||| |||||||||||||| ||||||||||||| || || |||||||| ||||||||||| Sbjct: 344 gccgatccgcttgaagagcgccttgacctccatggagtaggagcaccaggacttggagta 285 Query: 559 gatgacgacggggttgtcggcgagcgtcttcttgacagagtcc 601 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 284 gatgacgacggggttgtcggcgagcgtcctcttgacagagtcc 242
>ref|XM_483838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 721 Score = 222 bits (112), Expect = 1e-54 Identities = 154/168 (91%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatctgtacagccgccaat 378 |||||| || ||||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 497 cagcatggtagctagctcccctttgcgatgaagcttcacagtatctgtacagccaccaat 438 Query: 379 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcaacctctctaacac 438 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 437 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcagccgctctaacac 378 Query: 439 cttttgcagttgtggtccctgagcaccgagatggtcgagctcgatgac 486 |||||||| || |||||||| || ||||| ||||||||||||||||| Sbjct: 377 cttttgcaactgaggtccctgtgcgccgagttggtcgagctcgatgac 330 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Minus Query: 539 gagcaccacgacttggagtagatgacgacggggttgtcggcgagcgtcttcttgacagag 598 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 313 gagcaccaggacttggagtagatgacgacggggttgtcggcgagcgtcctcttgacagag 254 Query: 599 tcc 601 ||| Sbjct: 253 tcc 251
>dbj|AK062820.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F01, full insert sequence Length = 720 Score = 222 bits (112), Expect = 1e-54 Identities = 154/168 (91%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatctgtacagccgccaat 378 |||||| || ||||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 496 cagcatggtagctagctcccctttgcgatgaagcttcacagtatctgtacagccaccaat 437 Query: 379 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcaacctctctaacac 438 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 436 gtgctttccaccaatgaaaacattaggaacagtggactgtccagtcagccgctctaacac 377 Query: 439 cttttgcagttgtggtccctgagcaccgagatggtcgagctcgatgac 486 |||||||| || |||||||| || ||||| ||||||||||||||||| Sbjct: 376 cttttgcaactgaggtccctgtgcgccgagttggtcgagctcgatgac 329 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Minus Query: 539 gagcaccacgacttggagtagatgacgacggggttgtcggcgagcgtcttcttgacagag 598 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 313 gagcaccaggacttggagtagatgacgacggggttgtcggcgagcgtcctcttgacagag 254 Query: 599 tcc 601 ||| Sbjct: 253 tcc 251
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 115 bits (58), Expect = 2e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 536 tacgagcaccacgacttggagtagatgacgacggggttgtcggcgagcgtcttcttgaca 595 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 28336412 tacgagcaccaggacttggagtagatgacgacggggttgtcggcgagcgtcctcttgaca 28336353 Query: 596 gagtcc 601 |||||| Sbjct: 28336352 gagtcc 28336347 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 388 accaatgaaaacattaggaacagtggactgtccagtcaacctctctaacaccttttgcag 447 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 28337238 accaatgaaaacattaggaacagtggactgtccagtcagccgctctaacaccttttgcaa 28337179 Query: 448 ttgtggtccctg 459 || |||||||| Sbjct: 28337178 ctgaggtccctg 28337167 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 463 accgagatggtcgagctcgatgacatgtggatccacgccaatccgcttgaagagaccctt 522 |||||| ||||||||||||||||| || || | ||||| |||||||||||||| |||| Sbjct: 28336566 accgagttggtcgagctcgatgacgtgcggctggacgccgatccgcttgaagagcgcctt 28336507 Query: 523 gacctccat 531 ||||||||| Sbjct: 28336506 gacctccat 28336498 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatct 364 |||||| || ||||||||||||||||||| ||| ||||| |||||| Sbjct: 28338060 cagcatggtagctagctcccctttgcgatgaagcttcacagtatct 28338015 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 363 ctgtacagccgccaatgtgctttccacc 390 |||||||||| ||||||||||||||||| Sbjct: 28337459 ctgtacagccaccaatgtgctttccacc 28337432
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 115 bits (58), Expect = 2e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 536 tacgagcaccacgacttggagtagatgacgacggggttgtcggcgagcgtcttcttgaca 595 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 65218 tacgagcaccaggacttggagtagatgacgacggggttgtcggcgagcgtcctcttgaca 65159 Query: 596 gagtcc 601 |||||| Sbjct: 65158 gagtcc 65153 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 388 accaatgaaaacattaggaacagtggactgtccagtcaacctctctaacaccttttgcag 447 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 66044 accaatgaaaacattaggaacagtggactgtccagtcagccgctctaacaccttttgcaa 65985 Query: 448 ttgtggtccctg 459 || |||||||| Sbjct: 65984 ctgaggtccctg 65973 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 463 accgagatggtcgagctcgatgacatgtggatccacgccaatccgcttgaagagaccctt 522 |||||| ||||||||||||||||| || || | ||||| |||||||||||||| |||| Sbjct: 65372 accgagttggtcgagctcgatgacgtgcggctggacgccgatccgcttgaagagcgcctt 65313 Query: 523 gacctccat 531 ||||||||| Sbjct: 65312 gacctccat 65304 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatct 364 |||||| || ||||||||||||||||||| ||| ||||| |||||| Sbjct: 66866 cagcatggtagctagctcccctttgcgatgaagcttcacagtatct 66821 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 363 ctgtacagccgccaatgtgctttccacc 390 |||||||||| ||||||||||||||||| Sbjct: 66265 ctgtacagccaccaatgtgctttccacc 66238
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 115 bits (58), Expect = 2e-22 Identities = 64/66 (96%) Strand = Plus / Minus Query: 536 tacgagcaccacgacttggagtagatgacgacggggttgtcggcgagcgtcttcttgaca 595 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 128227 tacgagcaccaggacttggagtagatgacgacggggttgtcggcgagcgtcctcttgaca 128168 Query: 596 gagtcc 601 |||||| Sbjct: 128167 gagtcc 128162 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 388 accaatgaaaacattaggaacagtggactgtccagtcaacctctctaacaccttttgcag 447 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 129053 accaatgaaaacattaggaacagtggactgtccagtcagccgctctaacaccttttgcaa 128994 Query: 448 ttgtggtccctg 459 || |||||||| Sbjct: 128993 ctgaggtccctg 128982 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 463 accgagatggtcgagctcgatgacatgtggatccacgccaatccgcttgaagagaccctt 522 |||||| ||||||||||||||||| || || | ||||| |||||||||||||| |||| Sbjct: 128381 accgagttggtcgagctcgatgacgtgcggctggacgccgatccgcttgaagagcgcctt 128322 Query: 523 gacctccat 531 ||||||||| Sbjct: 128321 gacctccat 128313 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 319 cagcatcgttgctagctcccctttgcgataaagtttcactgtatct 364 |||||| || ||||||||||||||||||| ||| ||||| |||||| Sbjct: 129875 cagcatggtagctagctcccctttgcgatgaagcttcacagtatct 129830 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 363 ctgtacagccgccaatgtgctttccacc 390 |||||||||| ||||||||||||||||| Sbjct: 129274 ctgtacagccaccaatgtgctttccacc 129247
>ref|NM_119017.3| Arabidopsis thaliana electron transporter/ thiol-disulfide exchange intermediate AT4G28730 mRNA, complete cds Length = 778 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 353 ttcactgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtg 412 |||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||| Sbjct: 536 ttcactgtatctgtgcagccaccaatgtgcttgccacatacgaaaacattaggaacagtg 477
>emb|BX828677.1|CNS0A4E7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL29ZA01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 717 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 353 ttcactgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtg 412 |||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||| Sbjct: 475 ttcactgtatctgtgcagccaccaatgtgcttgccacatacgaaaacattaggaacagtg 416
>gb|BT003703.1| Arabidopsis thaliana At4g28730 mRNA, complete cds Length = 525 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 353 ttcactgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtg 412 |||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||| Sbjct: 458 ttcactgtatctgtgcagccaccaatgtgcttgccacatacgaaaacattaggaacagtg 399
>dbj|AK118672.1| Arabidopsis thaliana At4g28730 mRNA for unknown protein, complete cds, clone: RAFL19-94-E06 Length = 747 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 353 ttcactgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtg 412 |||||||||||||| ||||| ||||||||||| |||| | ||||||||||||||||||| Sbjct: 536 ttcactgtatctgtgcagccaccaatgtgcttgccacatacgaaaacattaggaacagtg 477
>ref|NM_127586.2| Arabidopsis thaliana arsenate reductase (glutaredoxin)/ electron transporter/ thiol-disulfide exchange intermediate AT2G20270 mRNA, complete cds Length = 879 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 358 tgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtggactg 417 |||||||| ||||| ||||||||||| || || ||||||||||| ||||||||| | || Sbjct: 511 tgtatctgagcagccaccaatgtgcttgcctccgatgaaaacattgggaacagtgtattg 452 Query: 418 tccagt 423 |||||| Sbjct: 451 tccagt 446
>gb|AY122897.1| Arabidopsis thaliana At2g20270/F11A3.18 mRNA, complete cds Length = 540 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 358 tgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtggactg 417 |||||||| ||||| ||||||||||| || || ||||||||||| ||||||||| | || Sbjct: 468 tgtatctgagcagccaccaatgtgcttgcctccgatgaaaacattgggaacagtgtattg 409 Query: 418 tccagt 423 |||||| Sbjct: 408 tccagt 403
>gb|AY094445.1| Arabidopsis thaliana At2g20270/F11A3.18 mRNA, complete cds Length = 743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 358 tgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtggactg 417 |||||||| ||||| ||||||||||| || || ||||||||||| ||||||||| | || Sbjct: 506 tgtatctgagcagccaccaatgtgcttgcctccgatgaaaacattgggaacagtgtattg 447 Query: 418 tccagt 423 |||||| Sbjct: 446 tccagt 441
>gb|AY087023.1| Arabidopsis thaliana clone 30611 mRNA, complete sequence Length = 709 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 358 tgtatctgtacagccgccaatgtgctttccaccaatgaaaacattaggaacagtggactg 417 |||||||| ||||| ||||||||||| || || ||||||||||| ||||||||| | || Sbjct: 511 tgtatctgagcagccaccaatgtgcttgcctccgatgaaaacattgggaacagtgtattg 452 Query: 418 tccagt 423 |||||| Sbjct: 451 tccagt 446
>emb|BX821801.1|CNS0AAAD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL75ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 644 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 368 cagccgccaatgtgctttccaccaatgaaaacattaggaacagtggactgtccagt 423 ||||| ||||||||||| || || ||||||||||| ||||||||| | |||||||| Sbjct: 482 cagccaccaatgtgcttgcctccgatgaaaacattgggaacagtgtattgtccagt 427
>emb|Z49699.1|RCGLREDXN R.communis mRNA for glutaredoxin Length = 583 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Minus Query: 367 acagccgccaatgtgctttccaccaatgaaaacatt 402 |||||| || ||||||||||| |||||||||||||| Sbjct: 283 acagccaccgatgtgctttccgccaatgaaaacatt 248
>gb|BC017135.1| Mus musculus glycine decarboxylase, mRNA (cDNA clone MGC:27650 IMAGE:4511573), complete cds Length = 3769 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 468 atccgcttgaagagacccttga 489
>gb|AC157986.4| Mus musculus chromosome 19, clone RP23-160F18, complete sequence Length = 207504 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 53810 atccgcttgaagagacccttga 53789
>ref|NM_138595.1| Mus musculus glycine decarboxylase (Gldc), mRNA Length = 3769 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 468 atccgcttgaagagacccttga 489
>dbj|AK139929.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020039B21 product:glycine decarboxylase, full insert sequence Length = 2871 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 482 atccgcttgaagagacccttga 503
>dbj|AK080937.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430214E13 product:GLYCINE DEHYDROGENASE [DECARBOXYLATING], MITOCHONDRIAL PRECURSOR (EC 1.4.4.2) (GLYCINE DECARBOXYLASE) (GLYCINE CLEAVAGE SYSTEM P- PROTEIN) homolog [Homo sapiens], full insert sequence Length = 3764 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 480 atccgcttgaagagacccttga 501
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 tcaagatggatatgcaaaataa 208 |||||||||||||||||||||| Sbjct: 7190888 tcaagatggatatgcaaaataa 7190867
>ref|XM_219785.3| PREDICTED: Rattus norvegicus glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P) (predicted) (Gldc_predicted), mRNA Length = 3087 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 319 atccgcttgaagagacccttga 340
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 tcaagatggatatgcaaaataa 208 |||||||||||||||||||||| Sbjct: 42993 tcaagatggatatgcaaaataa 42972
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 187 tcaagatggatatgcaaaataa 208 |||||||||||||||||||||| Sbjct: 142967 tcaagatggatatgcaaaataa 142946
>gb|AC102722.7| Mus musculus chromosome 19, clone RP24-108O16, complete sequence Length = 141681 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagacccttga 524 |||||||||||||||||||||| Sbjct: 86411 atccgcttgaagagacccttga 86432
>gb|AF047694.1|AF047694 Vernicia fordii glutaredoxin mRNA, complete cds Length = 786 Score = 44.1 bits (22), Expect = 0.52 Identities = 40/46 (86%) Strand = Plus / Minus Query: 367 acagccgccaatgtgctttccaccaatgaaaacattaggaacagtg 412 |||||| ||||||||||| || || ||||||||||| || |||||| Sbjct: 360 acagccaccaatgtgcttgccgccgatgaaaacattgggcacagtg 315
>ref|XM_525434.1| PREDICTED: Pan troglodytes similar to chondrolectin variant CHODLFdeltaE (LOC470050), mRNA Length = 2163 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 ttcttcctttactgcttcagcaaca 111 |||||||||||||||||||| |||| Sbjct: 1974 ttcttcctttactgcttcagtaaca 1950
>ref|XM_531519.1| PREDICTED: Pan troglodytes similar to chondrolectin variant CHODLFdeltaE (LOC474072), mRNA Length = 978 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 ttcttcctttactgcttcagcaaca 111 |||||||||||||||||||| |||| Sbjct: 789 ttcttcctttactgcttcagtaaca 765
>emb|AL353640.7| Human DNA sequence from clone RP11-458E15 on chromosome 20 Contains ESTs, STSs, GSSs and a CpG island, complete sequence Length = 62477 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 aacagtggactgtccagtcaa 426 ||||||||||||||||||||| Sbjct: 27775 aacagtggactgtccagtcaa 27755
>gb|AF523315.1| Homo sapiens chondrolectin variant CHODLFdeltaE mRNA, complete cds Length = 821 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 ttcttcctttactgcttcagcaaca 111 |||||||||||||||||||| |||| Sbjct: 628 ttcttcctttactgcttcagtaaca 604
>gb|AF523313.1| Homo sapiens chondrolectin variant CHODLdeltaE mRNA, complete cds Length = 919 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 ttcttcctttactgcttcagcaaca 111 |||||||||||||||||||| |||| Sbjct: 726 ttcttcctttactgcttcagtaaca 702
>gb|AF406809.1|AF406809 Tilia platyphyllos glutaredoxin (Cl31) mRNA, complete cds Length = 508 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Minus Query: 367 acagccgccaatgtgctttccaccaatgaaaacattaggaacagt 411 |||||| |||||||| || || |||||||||||||| || ||||| Sbjct: 267 acagccaccaatgtgtttcccgccaatgaaaacatttggcacagt 223
>gb|AC072053.4| Homo sapiens BAC clone RP11-21A5 from 2, complete sequence Length = 39225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 tcaactcagaattatttttgt 71 ||||||||||||||||||||| Sbjct: 33536 tcaactcagaattatttttgt 33556
>emb|AL929005.7| Zebrafish DNA sequence from clone CH211-223P8, complete sequence Length = 166364 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 59 gaattatttttgtcgaattcacagg 83 ||||||||||||||||||| ||||| Sbjct: 148883 gaattatttttgtcgaatttacagg 148859
>gb|AC111084.12| Mus musculus chromosome 7, clone RP23-143J24, complete sequence Length = 205564 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cagcaacagtaacagatatac 124 ||||||||||||||||||||| Sbjct: 109231 cagcaacagtaacagatatac 109211
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgatgagttattcactttga 305 |||||||||||||||||||| Sbjct: 2937021 tgatgagttattcactttga 2937002
>ref|XM_538655.2| PREDICTED: Canis familiaris similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein), transcript variant 1 (LOC481534), mRNA Length = 3614 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagaccctt 522 |||||||||||||||||||| Sbjct: 304 atccgcttgaagagaccctt 323
>ref|XM_859381.1| PREDICTED: Canis familiaris similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein), transcript variant 3 (LOC481534), mRNA Length = 3665 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 atccgcttgaagagaccctt 522 |||||||||||||||||||| Sbjct: 304 atccgcttgaagagaccctt 323
>emb|BX323464.18| Zebrafish DNA sequence from clone CH211-93E11 in linkage group 12, complete sequence Length = 167058 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 aatgggaacacaaatcatcaattt 178 |||||||||| ||||||||||||| Sbjct: 107933 aatgggaacataaatcatcaattt 107956
>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG island, complete sequence Length = 162575 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 gggttttcttcctttactgcttca 105 |||||||||||||| ||||||||| Sbjct: 18187 gggttttcttccttcactgcttca 18164
>gb|AC154328.2| Mus musculus BAC clone RP23-298N23 from chromosome 13, complete sequence Length = 182025 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 catcaactcagaattatttttgtc 72 |||||||||||||| ||||||||| Sbjct: 70405 catcaactcagaatgatttttgtc 70428
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgatgagttattcactttga 305 |||||||||||||||||||| Sbjct: 2881366 tgatgagttattcactttga 2881347
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tgatgagttattcactttga 305 |||||||||||||||||||| Sbjct: 3024282 tgatgagttattcactttga 3024263
>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence Length = 93868 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 392 atgaaaacattaggaacagtggactgtccagt 423 ||||||||||| ||||||||| | |||||||| Sbjct: 73333 atgaaaacattgggaacagtgtattgtccagt 73302
>gb|AC109604.8| Mus musculus strain 129Sv/CJ7 clone rp22-298k22, complete sequence Length = 139770 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 catcaactcagaattatttttgtc 72 |||||||||||||| ||||||||| Sbjct: 119442 catcaactcagaatgatttttgtc 119419
>emb|BX001032.12| Zebrafish DNA sequence from clone CH211-14K18 in linkage group 12, complete sequence Length = 162109 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 aatgggaacacaaatcatcaattt 178 |||||||||| ||||||||||||| Sbjct: 110091 aatgggaacataaatcatcaattt 110114
>gb|AC155914.9| Mus musculus 6 BAC RP24-482F20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169708 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcaactcagaattatttttg 70 |||||||||||||||||||| Sbjct: 161144 tcaactcagaattatttttg 161125
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 gtcggcgagcgtcttcttga 593 |||||||||||||||||||| Sbjct: 3838370 gtcggcgagcgtcttcttga 3838351
>dbj|AK018498.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030409K20 product:unclassifiable, full insert sequence Length = 2160 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcaactcagaattatttttg 70 |||||||||||||||||||| Sbjct: 194 tcaactcagaattatttttg 175
>gb|AC153628.3| Mus musculus 6 BAC RP23-13B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219322 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcaactcagaattatttttg 70 |||||||||||||||||||| Sbjct: 63505 tcaactcagaattatttttg 63486
>emb|BX511112.6| Zebrafish DNA sequence from clone DKEY-188G12 in linkage group 20, complete sequence Length = 139580 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ggaacacaaatcatcaattt 178 |||||||||||||||||||| Sbjct: 100395 ggaacacaaatcatcaattt 100376
>gb|AC153866.6| Mus musculus 10 BAC RP23-350O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184984 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 catcaactcagaattatttttgtc 72 |||||||||||||| ||||||||| Sbjct: 73365 catcaactcagaatgatttttgtc 73388
>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4, complete sequence Length = 207949 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 taaagtttcactgtatctgtacag 370 |||||||| ||||||||||||||| Sbjct: 6440 taaagttttactgtatctgtacag 6417
>gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 map 4P16, complete sequence Length = 145173 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gataaagtttcactgtatct 364 |||||||||||||||||||| Sbjct: 24367 gataaagtttcactgtatct 24348
>gb|DQ221253.1| Danio rerio voltage-gated sodium channel Nav1.4a (Nav1.4a) gene, complete cds Length = 26428 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 aatgggaacacaaatcatcaattt 178 |||||||||| ||||||||||||| Sbjct: 8422 aatgggaacataaatcatcaattt 8399
>emb|CR855328.8| Zebrafish DNA sequence from clone CH211-207D6 in linkage group 2, complete sequence Length = 152638 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 ggaacacaaatcatcaattt 178 |||||||||||||||||||| Sbjct: 22100 ggaacacaaatcatcaattt 22119
>gb|AC128704.4| Mus musculus BAC clone RP23-436H14 from 3, complete sequence Length = 212119 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggctcaaatcaataaaccaa 242 |||||||||||||||||||| Sbjct: 160267 ggctcaaatcaataaaccaa 160286
>gb|AC091313.11| Mus musculus chromosome 3, clone RP23-173I1, complete sequence Length = 202531 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ggctcaaatcaataaaccaa 242 |||||||||||||||||||| Sbjct: 169454 ggctcaaatcaataaaccaa 169435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,169,010 Number of Sequences: 3902068 Number of extensions: 5169010 Number of successful extensions: 93024 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92748 Number of HSP's gapped (non-prelim): 276 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)