ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15d16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120437.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098D14, full insert sequence Length = 1950 Score = 252 bits (127), Expect = 1e-63 Identities = 256/299 (85%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 1531 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 1472 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 1471 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 1412 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 1411 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 1352 Query: 486 caagagcacttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgt 545 || || |||||||||||||| || ||||||||||| |||||||| ||||| |||||| | Sbjct: 1351 caggaacacttgatctgcctaccgccaataagttgtccattaccagtctgaattgctaga 1292 Query: 546 gcagcttcttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 1291 gcagcttcttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 1233 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 1595 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 1542
>dbj|AK107324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E09, full insert sequence Length = 1512 Score = 252 bits (127), Expect = 1e-63 Identities = 256/299 (85%) Strand = Plus / Plus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 52 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 111 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 112 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 171 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 172 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 231 Query: 486 caagagcacttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgt 545 || || |||||||||||||| || ||||||||||| |||||||| ||||| |||||| | Sbjct: 232 caggaacacttgatctgcctaccgccaataagttgtccattaccagtctgaattgctaga 291 Query: 546 gcagcttcttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 292 gcagcttcttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 350 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 265 agcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 2 agccgccgtcgtagatggcctggctggctccggcgcccat 41
>dbj|AK099639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059N16, full insert sequence Length = 1866 Score = 252 bits (127), Expect = 1e-63 Identities = 256/299 (85%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 1525 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 1466 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 1465 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 1406 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 1405 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 1346 Query: 486 caagagcacttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgt 545 || || |||||||||||||| || ||||||||||| |||||||| ||||| |||||| | Sbjct: 1345 caggaacacttgatctgcctaccgccaataagttgtccattaccagtctgaattgctaga 1286 Query: 546 gcagcttcttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 1285 gcagcttcttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 1227 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 1589 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 1536
>dbj|AK060913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G02, full insert sequence Length = 1272 Score = 252 bits (127), Expect = 1e-63 Identities = 256/299 (85%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 824 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 765 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 764 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 705 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 704 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 645 Query: 486 caagagcacttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgt 545 || || |||||||||||||| || ||||||||||| |||||||| ||||| |||||| | Sbjct: 644 caggaacacttgatctgcctaccgccaataagttgtccattaccagtctgaattgctaga 585 Query: 546 gcagcttcttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 584 gcagcttcttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 526 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 888 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 835
>gb|BT016821.1| Zea mays clone Contig654 mRNA sequence Length = 1819 Score = 157 bits (79), Expect = 5e-35 Identities = 136/155 (87%) Strand = Plus / Plus Query: 453 gatgctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccacca 512 |||||||||||| ||||||| || ||||||||||| || ||||| ||||||||||| ||| Sbjct: 548 gatgctgtcccttgtggagtcggcttgcttccccaggaacactttatctgcctcccgcca 607 Query: 513 ataagttggccattacccgtctgtattgcttgtgcagcttcttcatgggtactatatctc 572 |||||||||||||||||| |||| ||||| |||||| || |||||||| || || ||| Sbjct: 608 ataagttggccattacccatctgaattgccaatgcagcctcctcatgggtgctgtacctc 667 Query: 573 acaaagccaaatcctttatcacgtgttacacggac 607 ||||||||||| ||||||||||| ||||||||||| Sbjct: 668 acaaagccaaagcctttatcacgagttacacggac 702 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 323 ggcgtgctgacccatcagggccgggttggcagccattttgctcagag 369 ||||||||||||||| ||||| ||||| | ||||| |||||||||| Sbjct: 421 ggcgtgctgacccattagggctgggttcgaggccatcttgctcagag 467 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 225 tagtacatgagctgctgctgctg 247 ||||||||||||||||||||||| Sbjct: 293 tagtacatgagctgctgctgctg 315
>gb|AY104066.1| Zea mays PCO123558 mRNA sequence Length = 1927 Score = 157 bits (79), Expect = 5e-35 Identities = 136/155 (87%) Strand = Plus / Minus Query: 453 gatgctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccacca 512 |||||||||||| ||||||| || ||||||||||| || ||||| ||||||||||| ||| Sbjct: 1277 gatgctgtcccttgtggagtcggcttgcttccccaggaacactttatctgcctcccgcca 1218 Query: 513 ataagttggccattacccgtctgtattgcttgtgcagcttcttcatgggtactatatctc 572 |||||||||||||||||| |||| ||||| |||||| || |||||||| || || ||| Sbjct: 1217 ataagttggccattacccatctgaattgccaatgcagcctcctcatgggtgctgtacctc 1158 Query: 573 acaaagccaaatcctttatcacgtgttacacggac 607 ||||||||||| ||||||||||| ||||||||||| Sbjct: 1157 acaaagccaaagcctttatcacgagttacacggac 1123 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgctg 247 ||||||||||||||||||||||| Sbjct: 1535 tagtacatgagctgctgctgctg 1513
>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034K24, complete sequence Length = 142852 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 69819 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 69760 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 69759 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 69700 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 69699 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 69640 Query: 486 ca 487 || Sbjct: 69639 ca 69638 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 494 cttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttc 553 |||||||||||| || ||||||||||| |||||||| ||||| |||||| | |||||||| Sbjct: 69361 cttgatctgcctaccgccaataagttgtccattaccagtctgaattgctagagcagcttc 69302 Query: 554 ttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 69301 ttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 69251 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 69883 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 69830
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Plus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 23317156 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 23317215 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 23317216 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 23317275 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 23317276 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 23317335 Query: 486 ca 487 || Sbjct: 23317336 ca 23317337 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Plus Query: 494 cttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttc 553 |||||||||||| || ||||||||||| |||||||| ||||| |||||| | |||||||| Sbjct: 23317614 cttgatctgcctaccgccaataagttgtccattaccagtctgaattgctagagcagcttc 23317673 Query: 554 ttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 23317674 ttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 23317724 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 23317092 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 23317145
>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence Length = 77605 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 62719 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 62660 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 62659 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 62600 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 62599 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 62540 Query: 486 ca 487 || Sbjct: 62539 ca 62538 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 494 cttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttc 553 |||||||||||| || ||||||||||| |||||||| ||||| |||||| | |||||||| Sbjct: 62261 cttgatctgcctaccgccaataagttgtccattaccagtctgaattgctagagcagcttc 62202 Query: 554 ttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 62201 ttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 62151 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 62783 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 62730
>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region, complete sequence Length = 70311 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Minus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 55275 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 55216 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 55215 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 55156 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 | || |||||||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 55155 gttggtgccggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 55096 Query: 486 ca 487 || Sbjct: 55095 ca 55094 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Minus Query: 494 cttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttc 553 |||||||||||| || ||||||||||| |||||||| ||||| |||||| | |||||||| Sbjct: 54817 cttgatctgcctaccgccaataagttgtccattaccagtctgaattgctagagcagcttc 54758 Query: 554 ttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 54757 ttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 54707 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 55339 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 55286
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 139 bits (70), Expect = 1e-29 Identities = 154/182 (84%) Strand = Plus / Plus Query: 306 gcagcctgcctcagggcggcgtgctgacccatcagggccgggttggcagccattttgctc 365 ||||||||| | |||||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct: 23627066 gcagcctgctttagggcggcgtgctgactcatcagggccgggttcgctgccatcttgctc 23627125 Query: 366 agagcaagggatcgctcgtaggagatgaggtcagctgccgacacgccaggggtgtatggc 425 || || |||| |||||||||| | |||||| | ||||||| |||||| || |||| Sbjct: 23627126 agcgccagggtgcgctcgtaggctaggaggtcggtcgccgacatgccaggattgaatggt 23627185 Query: 426 gctgatgccggagggggaagaggtgcagatgctgtccctggtggagttggtttgcttccc 485 |||| ||| |||||||| || || || ||||||||||||||||||||||| ||||||||| Sbjct: 23627186 gctggtgctggagggggtaggggcgcggatgctgtccctggtggagttggcttgcttccc 23627245 Query: 486 ca 487 || Sbjct: 23627246 ca 23627247 Score = 117 bits (59), Expect = 4e-23 Identities = 98/111 (88%) Strand = Plus / Plus Query: 494 cttgatctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttc 553 |||||||||||| || ||||||||||| |||||||| ||||| |||||| | |||||||| Sbjct: 23627524 cttgatctgcctaccgccaataagttgtccattaccagtctgaattgctagagcagcttc 23627583 Query: 554 ttcatgggtactatatctcacaaagccaaatcctttatcacgtgttacacg 604 ||||||||| || || | |||||||||||| ||||||||||| |||||||| Sbjct: 23627584 ttcatgggtgctgtaacgcacaaagccaaaacctttatcacgcgttacacg 23627634 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 251 gttgacactctggaagcccccgtcatagatggcctggctggcgccggcgcccat 304 |||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 23627002 gttggcactctggtagccgccgtcgtagatggcctggctggctccggcgcccat 23627055
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 115 bits (58), Expect = 2e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 498 atctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttcttca 557 ||||||||||| ||||||||||||||||||||| |||| ||||| |||||| || ||| Sbjct: 27841 atctgcctcccgccaataagttggccattacccatctgaattgccaatgcagcctcctca 27782 Query: 558 tgggtactatatctcacaaagccaaatcctttatcacgtgttacacggac 607 ||||| || || |||||||||||||| ||||||||||| ||||||||||| Sbjct: 27781 tgggtgctgtacctcacaaagccaaagcctttatcacgagttacacggac 27732 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgctg 247 ||||||||||||||||||||||| Sbjct: 29612 tagtacatgagctgctgctgctg 29590 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 323 ggcgtgctgacccatcagggccgggttggcagccattttgctcagag 369 ||||||||||||||| ||||| ||||| | ||||| |||||||||| Sbjct: 29484 ggcgtgctgacccattagggctgggttcgaggccatcttgctcagag 29438 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 453 gatgctgtccctggtggagttggtttgcttcccca 487 |||||||||||| ||||||| || ||||||||||| Sbjct: 29357 gatgctgtcccttgtggagtcggcttgcttcccca 29323
>gb|AF527809.1| Sorghum bicolor clone BAC SB_BBc0234M12 php200725 orthologous region Length = 108553 Score = 99.6 bits (50), Expect = 1e-17 Identities = 95/110 (86%) Strand = Plus / Minus Query: 498 atctgcctcccaccaataagttggccattacccgtctgtattgcttgtgcagcttcttca 557 ||||||||||| |||||||||||||||||| || |||| ||||| || ||||| || ||| Sbjct: 42533 atctgcctcccgccaataagttggccattagccatctgaattgcctgcgcagcctcctca 42474 Query: 558 tgggtactatatctcacaaagccaaatcctttatcacgtgttacacggac 607 ||||| || || || ||||| ||||| ||||||||||| ||||||||||| Sbjct: 42473 tgggtgctgtaccttacaaaaccaaagcctttatcacgagttacacggac 42424 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 453 gatgctgtccctggtggagttggtttgcttcccca 487 |||||||||||||||||||| |||||||||||||| Sbjct: 44020 gatgctgtccctggtggagtcggtttgcttcccca 43986 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgctg 247 ||||||||||||||||||||||| Sbjct: 44284 tagtacatgagctgctgctgctg 44262
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 93.7 bits (47), Expect = 6e-16 Identities = 56/59 (94%) Strand = Plus / Plus Query: 77 gaaaaaggcctgatgcacgaaaaaacatggagaaacaatcctccctttaatattaggta 135 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 21334 gaaaaagacctgatgcacgaaaaaaggtggagaaacaatcctccctttaatattaggta 21392
>emb|AJ272011.1|NPL272011 Nicotiana plumbaginifolia mRNA for oligouridylate binding protein (ubp1 gene) Length = 1668 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 462 cctggtggagttggtttgcttccccaagagcacttga 498 |||||||||||||| ||||||||||| |||||||||| Sbjct: 1179 cctggtggagttggcttgcttccccacgagcacttga 1143
>ref|NM_112266.2| Arabidopsis thaliana mRNA 3'-UTR binding AT3G14100 mRNA, complete cds Length = 2189 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctg 502 ||||| |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1148 gctgtacctggtggagttggcttgtttccccatgagcactttatctg 1102
>ref|NM_101598.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G17370 mRNA, complete cds Length = 1772 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccac 510 ||||| |||| ||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1237 gctgttcctgctggagttggcttgcttccccaagaacacttcatttgcctgccac 1183
>gb|AY139775.1| Arabidopsis thaliana AT3g14100/MAG2_5 mRNA, complete cds Length = 1505 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctg 502 ||||| |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1050 gctgtacctggtggagttggcttgtttccccatgagcactttatctg 1004
>emb|BX815458.1|CNS0ACZW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS61ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1488 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccac 510 ||||| |||| ||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1142 gctgttcctgctggagttggcttgcttccccaagaacacttcatttgcctgccac 1088
>emb|BX815461.1|CNS0ACRK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS62ZC06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1573 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccac 510 ||||| |||| ||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1109 gctgttcctgctggagttggcttgcttccccaagaacacttcatttgcctgccac 1055
>emb|BX814983.1|CNS0ACXV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS21ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1504 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccac 510 ||||| |||| ||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1070 gctgttcctgctggagttggcttgcttccccaagaacacttcatttgcctgccac 1016
>emb|BX825019.1|CNS0A5JR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1537 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctg 502 ||||| |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1083 gctgtacctggtggagttggcttgtttccccatgagcactttatctg 1037
>gb|BT004540.1| Arabidopsis thaliana AT3g14100/MAG2_5 gene, complete cds Length = 1284 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctg 502 ||||| |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1040 gctgtacctggtggagttggcttgtttccccatgagcactttatctg 994
>gb|AY087692.1| Arabidopsis thaliana clone 37712 mRNA, complete sequence Length = 1557 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctg 502 ||||| |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1103 gctgtacctggtggagttggcttgtttccccatgagcactttatctg 1057
>gb|AY085705.1| Arabidopsis thaliana clone 17210 mRNA, complete sequence Length = 1629 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcacttgatctgcctcccac 510 ||||| |||| ||||||||| |||||||||||||| ||||| || ||||| |||| Sbjct: 1145 gctgttcctgctggagttggcttgcttccccaagaacacttcatttgcctgccac 1091
>ref|XM_483366.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1878 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 556 catgggtactatatctcacaaagccaaatcctttatc 592 ||||| |||| ||||||||||| |||||||||||||| Sbjct: 1220 catggttactgtatctcacaaacccaaatcctttatc 1184
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 556 catgggtactatatctcacaaagccaaatcctttatc 592 ||||| |||| ||||||||||| |||||||||||||| Sbjct: 25852557 catggttactgtatctcacaaacccaaatcctttatc 25852593
>emb|BX823141.1|CNS0A605 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB92ZH11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1502 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Minus Query: 462 cctggtggagttggtttgcttccccaagagcacttgatctg 502 |||||||||||||| ||| ||||||| |||||||| ||||| Sbjct: 1077 cctggtggagttggcttgtttccccatgagcactttatctg 1037
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 556 catgggtactatatctcacaaagccaaatcctttatc 592 ||||| |||| ||||||||||| |||||||||||||| Sbjct: 38344 catggttactgtatctcacaaacccaaatcctttatc 38380
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 556 catgggtactatatctcacaaagccaaatcctttatc 592 ||||| |||| ||||||||||| |||||||||||||| Sbjct: 124768 catggttactgtatctcacaaacccaaatcctttatc 124804
>dbj|AK069912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037G11, full insert sequence Length = 1877 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Minus Query: 556 catgggtactatatctcacaaagccaaatcctttatc 592 ||||| |||| ||||||||||| |||||||||||||| Sbjct: 1219 catggttactgtatctcacaaacccaaatcctttatc 1183
>gb|AC007843.6|AC007843 Arabidopsis thaliana chromosome I BAC F28G4 genomic sequence, complete sequence Length = 84974 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcact 495 ||||| |||| ||||||||| |||||||||||||| |||| Sbjct: 63538 gctgttcctgctggagttggcttgcttccccaagaacact 63499
>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I, complete sequence Length = 127968 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcact 495 ||||| |||| ||||||||| |||||||||||||| |||| Sbjct: 5819 gctgttcctgctggagttggcttgcttccccaagaacact 5858
>dbj|AP000600.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MAG2 Length = 73859 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttccccaagagcact 495 ||||| |||||||||||||| ||| ||||||| ||||||| Sbjct: 16722 gctgtacctggtggagttggcttgtttccccatgagcact 16683
>gb|AY103766.1| Zea mays PCO100830 mRNA sequence Length = 1823 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Minus Query: 457 ctgtccctggtggagttggtttgcttccccaagagcactt 496 ||||||| ||||||||||| ||| ||||||| |||||||| Sbjct: 1268 ctgtccccggtggagttggcttgtttccccatgagcactt 1229
>gb|AC144483.10| Medicago truncatula clone mth2-12f13, complete sequence Length = 105599 Score = 44.1 bits (22), Expect = 0.53 Identities = 31/34 (91%) Strand = Plus / Minus Query: 556 catgggtactatatctcacaaagccaaatccttt 589 |||||||||| ||||||||||| ||||| ||||| Sbjct: 31811 catgggtactgtatctcacaaacccaaaaccttt 31778
>gb|DQ268861.1| Solanum tuberosum clone 180D07 oligouridylate binding protein-like protein mRNA, complete cds Length = 1570 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 567 tatctcacaaagccaaatcctttatc 592 ||||| |||||||||||||||||||| Sbjct: 1043 tatcttacaaagccaaatcctttatc 1018
>ref|XM_479160.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1666 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 1428 tagtacatgagctgctgctgc 1408
>gb|BT013167.1| Lycopersicon esculentum clone 134230R, mRNA sequence Length = 1654 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 567 tatctcacaaagccaaatcctttatcacg 595 ||||| ||||| ||||||||||||||||| Sbjct: 1088 tatcttacaaaaccaaatcctttatcacg 1060
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 cctggctggcgccggcgccca 303 ||||||||||||||||||||| Sbjct: 58901 cctggctggcgccggcgccca 58881
>gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62121 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 agattagaaattcagaattag 157 ||||||||||||||||||||| Sbjct: 58674 agattagaaattcagaattag 58694
>emb|AL353637.21| Human DNA sequence from clone RP11-159H20 on chromosome 9q21.12-21.32 Contains a DnaJ (Hsp40) homolog subfamily B member 5 (DNAJB5) pseudogene, a lysophospholipase II (LYPLA2) pseudogene, an eukaryotic translation initiation factor 3 subunit 1 35kDa (EIF3S1) pseudogene, the gene (possible pseudogene) for a novel protein similar to forkhead box B1 (FOXB1), ATP synthase H+ transporting mitochondrial F0 complex subunit f isoform 2 (ATP5J2) pseudogene and three CpG islands, complete sequence Length = 146466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 tggcagccattttgctcagag 369 ||||||||||||||||||||| Sbjct: 54504 tggcagccattttgctcagag 54484
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 cctggctggcgccggcgccca 303 ||||||||||||||||||||| Sbjct: 95092 cctggctggcgccggcgccca 95072
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 25308936 tagtacatgagctgctgctgc 25308916
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 125607 tagtacatgagctgctgctgc 125587
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 2026 tagtacatgagctgctgctgc 2006
>dbj|AK119233.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E11, full insert sequence Length = 1665 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 1427 tagtacatgagctgctgctgc 1407
>dbj|AK103536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132B05, full insert sequence Length = 1666 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 1428 tagtacatgagctgctgctgc 1408
>dbj|AK059856.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A07, full insert sequence Length = 1390 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 tagtacatgagctgctgctgc 245 ||||||||||||||||||||| Sbjct: 1151 tagtacatgagctgctgctgc 1131
>gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62101 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 agattagaaattcagaattag 157 ||||||||||||||||||||| Sbjct: 3452 agattagaaattcagaattag 3432
>ref|NM_104285.2| Arabidopsis thaliana mRNA 3'-UTR binding AT1G54080 transcript variant AT1G54080.1 mRNA, complete cds Length = 1708 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1137 gctgtgcctgatggagttggtttgtttcccca 1106
>ref|NM_179475.1| Arabidopsis thaliana mRNA 3'-UTR binding AT1G54080 transcript variant AT1G54080.2 mRNA, complete cds Length = 1720 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1149 gctgtgcctgatggagttggtttgtttcccca 1118
>gb|AC123993.10| Mus musculus chromosome 3, clone RP24-357L20, complete sequence Length = 187115 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atattaggtatagattagaa 145 |||||||||||||||||||| Sbjct: 44688 atattaggtatagattagaa 44707
>ref|XM_419304.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ37440 (LOC421229), mRNA Length = 1335 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 249 gggttgacactctggaagcccccg 272 |||||||||| ||||||||||||| Sbjct: 911 gggttgacacactggaagcccccg 888
>ref|XM_389103.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08927.1) partial mRNA Length = 1578 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 agcaagggatcgctcgtagg 387 |||||||||||||||||||| Sbjct: 1050 agcaagggatcgctcgtagg 1031
>ref|XM_643132.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (507.t00001) partial mRNA Length = 1287 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 caccaataagttggccatta 527 |||||||||||||||||||| Sbjct: 380 caccaataagttggccatta 399
>ref|XM_644084.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (335.t00005) partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 caccaataagttggccatta 527 |||||||||||||||||||| Sbjct: 380 caccaataagttggccatta 399
>ref|XM_652008.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (4.t00095) partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 caccaataagttggccatta 527 |||||||||||||||||||| Sbjct: 380 caccaataagttggccatta 399
>emb|Z98050.1|HS451B15 Human DNA sequence from clone RP3-451B15 on chromosome 6p24 Contains the 3' end of the HIVEP1 gene for human immunodeficiency virus type I enhancer-binding protein 1, the EDN1 gene for endothelin 1 (ET1) and a SMT3 suppressor of mif two 3 homolog 1 (yeast) (SMT3H1) pseudogene, complete sequence Length = 186510 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 aaaaacatggagaaacaatc 116 |||||||||||||||||||| Sbjct: 99901 aaaaacatggagaaacaatc 99882
>emb|BX323845.6| Human DNA sequence from clone RP11-272G22 on chromosome X Contains a pseudogene similar to part of 6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 1 (PFKFB1), a pseudogene similar to part of ribosomal protein S13 (RPS13) and a mitochondrial ribosomal protein L32 (MRPL32) pseudogene, complete sequence Length = 86141 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 gtaggagatgaggtcagctgccga 406 |||||||||||||||| ||||||| Sbjct: 46716 gtaggagatgaggtcatctgccga 46739
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ctttaatattaggtatagat 140 |||||||||||||||||||| Sbjct: 94716 ctttaatattaggtatagat 94735
>gb|AC124080.15| Mus musculus chromosome 3, clone RP24-380G11, complete sequence Length = 198564 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atattaggtatagattagaa 145 |||||||||||||||||||| Sbjct: 188033 atattaggtatagattagaa 188052
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggcctggctggcgccggcgc 300 |||||||||||||||||||| Sbjct: 310447 ggcctggctggcgccggcgc 310466
>gb|AC162938.5| Mus musculus BAC clone RP23-104D6 from chromosome 9, complete sequence Length = 204657 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gagctgctgctgctgagggt 252 |||||||||||||||||||| Sbjct: 145733 gagctgctgctgctgagggt 145714
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggcctggctggcgccggcgc 300 |||||||||||||||||||| Sbjct: 147828 ggcctggctggcgccggcgc 147847
>emb|AL645800.5| Zebrafish DNA sequence from clone XX-184L24 Contains three novel genes and the spi1 gene for transcription factor spi1, complete sequence Length = 98204 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tttctttagtgcctcaacaa 26 |||||||||||||||||||| Sbjct: 16060 tttctttagtgcctcaacaa 16079
>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8 Length = 87224 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ggtatagattagaaattcag 151 |||||||||||||||||||| Sbjct: 85865 ggtatagattagaaattcag 85884
>gb|AY133610.1| Arabidopsis thaliana At1g54080/F15I1_16 mRNA, complete cds Length = 1281 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1052 gctgtgcctgatggagttggtttgtttcccca 1021
>gb|AC007286.18| Homo sapiens 12q15 BAC RPCI11-298M11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 93001 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 tgggtactatatctcacaaa 577 |||||||||||||||||||| Sbjct: 66411 tgggtactatatctcacaaa 66430
>gb|AC009000.6| Homo sapiens chromosome 19 clone LLNLR-276C11, complete sequence Length = 37107 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ctggctggcgccggcgccca 303 |||||||||||||||||||| Sbjct: 7531 ctggctggcgccggcgccca 7550
>dbj|AB201259.1| Balaenoptera brydei mitochondrial DNA, complete genome, isolate:NSMT-33072 Length = 16411 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ttaatattaggtatagatta 142 |||||||||||||||||||| Sbjct: 4405 ttaatattaggtatagatta 4386
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 atagattagaaattcagaat 154 |||||||||||||||||||| Sbjct: 61082 atagattagaaattcagaat 61101
>gb|AC022268.5| Homo sapiens BAC clone RP11-494K17 from 12, complete sequence Length = 192952 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tgaaatagaaggcaacatat 76 |||||||||||||||||||| Sbjct: 73797 tgaaatagaaggcaacatat 73778
>gb|AF361639.1| Arabidopsis thaliana At1g54080/F15I1_16 mRNA, complete cds Length = 1763 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1198 gctgtgcctgatggagttggtttgtttcccca 1167
>gb|AF348587.1| Arabidopsis thaliana clone C00207 (e) putative oligouridylate binding protein (At1g54080) mRNA, complete cds Length = 1281 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1052 gctgtgcctgatggagttggtttgtttcccca 1021
>gb|AC023163.25| Homo sapiens 12 BAC RP11-239B4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122882 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 tgggtactatatctcacaaa 577 |||||||||||||||||||| Sbjct: 54939 tgggtactatatctcacaaa 54920
>gb|AC011454.6|AC011454 Homo sapiens chromosome 19 clone CTC-347E6, complete sequence Length = 163120 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gctgctgctgctgagggttg 254 |||||||||||||||||||| Sbjct: 130550 gctgctgctgctgagggttg 130569
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atagattagaaattcagaat 154 |||||||||||||||||||| Sbjct: 21273277 atagattagaaattcagaat 21273258
>emb|BX817593.1|CNS0AEEF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL31ZG11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 736 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 171 gctgtgcctgatggagttggtttgtttcccca 140
>emb|BX816622.1|CNS0AD7O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1709 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 1260 gctgtgcctgatggagttggtttgtttcccca 1229 Score = 40.1 bits (20), Expect = 8.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 546 gcagcttcttcatgggtactatatctcacaaagccaaatccttt 589 ||||| || ||||| ||| ||||||||||||| ||||| ||||| Sbjct: 1167 gcagcctcgtcatgagtattatatctcacaaaaccaaacccttt 1124
>gb|AC011194.15|AC011194 Mus musculus chromosome 11, clone RP23-196F5, complete sequence Length = 181320 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 aggaaggaggaaggtgttgt 175 |||||||||||||||||||| Sbjct: 133161 aggaaggaggaaggtgttgt 133142
>dbj|AP006469.1| Balaenoptera brydei mitochondrial DNA, complete genome Length = 16408 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ttaatattaggtatagatta 142 |||||||||||||||||||| Sbjct: 4404 ttaatattaggtatagatta 4385
>gb|AF400185.1| Spodoptera frugiperda ribosomal protein L14 mRNA, complete cds Length = 647 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ttctttagtgcctcaacaag 27 |||||||||||||||||||| Sbjct: 561 ttctttagtgcctcaacaag 580
>gb|AC078822.28| Homo sapiens 12 BAC RP11-216I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166825 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tgaaatagaaggcaacatat 76 |||||||||||||||||||| Sbjct: 83052 tgaaatagaaggcaacatat 83071
>ref|XM_215832.3| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ37440 (predicted) (LOC296145), mRNA Length = 2979 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 agggttgacactctggaagccccc 271 ||||||||||| |||||||||||| Sbjct: 2556 agggttgacacactggaagccccc 2533
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 40.1 bits (20), Expect = 8.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 105 ggagaaacaatcctccctttaatattaggtatagat 140 |||||||| |||| |||||||||||||||| |||| Sbjct: 160547 ggagaaaccatccgtcctttaatattaggtagagat 160512
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ctggctggcgccggcgccca 303 |||||||||||||||||||| Sbjct: 870699 ctggctggcgccggcgccca 870718
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gatggcctggctggcgccgg 297 |||||||||||||||||||| Sbjct: 681615 gatggcctggctggcgccgg 681634
>gb|AC006577.2|F15I1 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence Length = 89035 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 456 gctgtccctggtggagttggtttgcttcccca 487 ||||| |||| ||||||||||||| ||||||| Sbjct: 44486 gctgtgcctgatggagttggtttgtttcccca 44517
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ggcctggctggcgccggcgc 300 |||||||||||||||||||| Sbjct: 192387 ggcctggctggcgccggcgc 192406
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atagattagaaattcagaat 154 |||||||||||||||||||| Sbjct: 21284541 atagattagaaattcagaat 21284522
>emb|AL079307.7|CNS00M8N Human chromosome 14 DNA sequence BAC R-280K24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190519 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gtaggagatgaggtcagctg 402 |||||||||||||||||||| Sbjct: 161711 gtaggagatgaggtcagctg 161730
>emb|AL732472.16| Mouse DNA sequence from clone RP23-41P22 on chromosome 2, complete sequence Length = 129369 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 540 gcttgtgcagcttcttcatg 559 |||||||||||||||||||| Sbjct: 104644 gcttgtgcagcttcttcatg 104663
>emb|AL929252.6| Zebrafish DNA sequence from clone CH211-150G13 in linkage group 7, complete sequence Length = 173244 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tttctttagtgcctcaacaa 26 |||||||||||||||||||| Sbjct: 117619 tttctttagtgcctcaacaa 117638
>emb|AL606824.13| Mouse DNA sequence from clone RP23-9G13 on chromosome 11, complete sequence Length = 247743 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 aggaaggaggaaggtgttgt 175 |||||||||||||||||||| Sbjct: 32418 aggaaggaggaaggtgttgt 32399 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,164,369 Number of Sequences: 3902068 Number of extensions: 6164369 Number of successful extensions: 144508 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143745 Number of HSP's gapped (non-prelim): 763 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
